Wall clock time and date at job start Sat Apr 11 2020 05:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.47291 * 2 1 4 4 C 1.35917 * 116.99851 * 180.02562 * 3 2 1 5 5 C 1.38798 * 120.00889 * 359.97438 * 4 3 2 6 6 C 1.38191 * 120.10239 * 179.97438 * 5 4 3 7 7 C 1.38233 * 120.12091 * 0.02562 * 6 5 4 8 8 Cl 1.73601 * 119.99515 * 179.97438 * 7 6 5 9 9 C 1.39038 * 120.01151 * 0.02562 * 7 6 5 10 10 N 1.39760 * 120.05056 * 180.02562 * 9 7 6 11 11 C 1.34771 * 119.99506 * 146.01705 * 10 9 7 12 12 O 1.21379 * 120.00340 * 5.15644 * 11 10 9 13 13 C 1.49358 * 119.99853 * 185.15997 * 11 10 9 14 14 O 1.21355 * 119.99795 * 359.73276 * 13 11 10 15 15 N 1.34771 * 119.99899 * 179.73619 * 13 11 10 16 16 C 1.46496 * 120.00300 * 354.34001 * 15 13 11 17 17 C 1.46509 * 119.99806 * 174.34090 * 15 13 11 18 18 C 1.50704 * 109.46838 * 89.99819 * 17 15 13 19 19 H 1.07997 * 120.00358 * 359.97438 * 18 17 15 20 20 C 1.37877 * 119.99693 * 179.97438 * 18 17 15 21 21 N 1.31518 * 120.00128 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00058 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47200 * 90.00065 * 22 20 18 24 24 H 1.48501 * 109.47209 * 210.00382 * 22 20 18 25 25 H 1.48508 * 109.47258 * 330.00490 * 22 20 18 26 26 C 1.38580 * 120.00379 * 179.72677 * 4 3 2 27 27 H 1.08993 * 109.46990 * 300.00332 * 1 2 3 28 28 H 1.08995 * 109.46895 * 60.00538 * 1 2 3 29 29 H 1.09004 * 109.47145 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47225 * 239.99589 * 2 1 3 31 31 H 1.09003 * 109.46856 * 120.00331 * 2 1 3 32 32 H 1.07995 * 119.94698 * 0.02562 * 5 4 3 33 33 H 1.08007 * 119.93982 * 180.02562 * 6 5 4 34 34 H 0.97003 * 119.99892 * 326.01482 * 10 9 7 35 35 H 1.08997 * 109.47318 * 84.06261 * 16 15 13 36 36 H 1.09003 * 109.46983 * 204.06403 * 16 15 13 37 37 H 1.09000 * 109.47063 * 324.06388 * 16 15 13 38 38 H 1.08993 * 109.47160 * 209.99803 * 17 15 13 39 39 H 1.09004 * 109.46805 * 330.00193 * 17 15 13 40 40 H 0.96997 * 120.00093 * 179.97438 * 21 20 18 41 41 H 1.08000 * 120.05417 * 359.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3539 1.5252 -0.0005 5 6 4.1995 0.4246 -0.0005 6 6 5.5698 0.6033 -0.0016 7 6 6.1030 1.8787 -0.0022 8 17 7.8249 2.0995 -0.0029 9 6 5.2604 2.9847 -0.0011 10 7 5.7986 4.2745 -0.0022 11 6 5.1639 5.2689 -0.6539 12 8 4.0793 5.0674 -1.1602 13 6 5.7951 6.6189 -0.7531 14 8 6.8773 6.8217 -0.2428 15 7 5.1628 7.6118 -1.4094 16 6 3.9175 7.3366 -2.1303 17 6 5.7207 8.9664 -1.4017 18 6 6.6570 9.1306 -2.5712 19 1 6.8204 8.3081 -3.2517 20 6 7.3050 10.3309 -2.7722 21 7 7.1064 11.3324 -1.9432 22 14 8.4660 10.5343 -4.2213 23 1 7.7076 11.0311 -5.3974 24 1 9.5297 11.5093 -3.8703 25 1 9.0839 9.2240 -4.5483 26 6 3.8837 2.8057 -0.0063 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7859 -0.5730 -0.0005 33 1 6.2254 -0.2550 -0.0020 34 1 6.6290 4.4540 0.4660 35 1 3.0782 7.3823 -1.4364 36 1 3.7806 8.0799 -2.9157 37 1 3.9673 6.3428 -2.5752 38 1 4.9119 9.6930 -1.4790 39 1 6.2676 9.1289 -0.4729 40 1 7.5625 12.1767 -2.0844 41 1 3.2267 3.6629 -0.0108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453694020.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:30 Heat of formation + Delta-G solvation = -71.951941 kcal Electronic energy + Delta-G solvation = -26688.055584 eV Core-core repulsion = 22595.183136 eV Total energy + Delta-G solvation = -4092.872448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.10739 -40.09372 -38.56068 -37.62631 -36.39466 -35.55206 -34.35321 -32.59023 -32.31967 -30.36095 -29.38792 -28.06558 -26.28804 -24.95222 -23.98092 -23.30069 -22.39798 -21.19835 -19.66457 -18.77807 -17.38523 -16.86667 -16.66465 -16.61709 -16.46145 -16.21601 -15.69111 -15.36650 -14.91579 -14.42176 -14.30131 -14.00750 -13.85168 -13.52145 -13.14660 -13.09074 -13.01627 -12.72222 -12.47150 -12.39268 -12.13272 -11.99174 -11.67481 -11.50619 -11.31634 -11.09693 -11.02197 -10.95659 -10.76265 -10.59741 -10.41849 -10.20992 -9.69498 -8.90026 -8.69657 -8.48802 -8.25937 -7.82995 -6.10123 -4.15260 0.78199 0.99234 1.83033 1.95465 2.48135 2.90732 3.29007 3.31782 3.35488 3.40636 3.68312 3.96125 4.38462 4.41042 4.52767 4.61691 4.63814 4.72301 4.81582 4.85065 5.07110 5.17552 5.24818 5.40151 5.49441 5.59748 5.66504 5.82872 5.88195 5.95184 6.03585 6.10923 6.35305 6.52135 6.77372 7.05918 7.08314 7.25138 7.33531 7.74983 7.86519 8.11881 8.15574 8.58500 8.89050 9.49724 10.98149 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015101 B = 0.002749 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.738815 B =10182.235161 C =11489.253029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.053 3.947 3 O -0.309 6.309 4 C 0.155 3.845 5 C -0.217 4.217 6 C -0.050 4.050 7 C -0.102 4.102 8 Cl -0.060 7.060 9 C 0.202 3.798 10 N -0.649 5.649 11 C 0.511 3.489 12 O -0.495 6.495 13 C 0.495 3.505 14 O -0.518 6.518 15 N -0.561 5.561 16 C 0.078 3.922 17 C 0.243 3.757 18 C -0.529 4.529 19 H 0.060 0.940 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.148 4.148 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.427 0.573 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.047 0.953 40 H 0.265 0.735 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.813 -24.862 5.436 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.222 6.222 4 C 0.109 3.891 5 C -0.237 4.237 6 C -0.069 4.069 7 C -0.132 4.132 8 Cl -0.031 7.031 9 C 0.105 3.895 10 N -0.296 5.296 11 C 0.295 3.705 12 O -0.368 6.368 13 C 0.275 3.725 14 O -0.395 6.395 15 N -0.292 5.292 16 C -0.065 4.065 17 C 0.124 3.876 18 C -0.567 4.567 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.532 5.532 22 Si 0.728 3.272 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.169 4.169 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.267 0.733 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.963 -24.394 5.336 26.885 hybrid contribution 1.302 0.018 -0.628 1.446 sum -8.661 -24.376 4.708 26.294 Atomic orbital electron populations 1.21784 0.92563 1.02872 1.03810 1.22841 0.96092 0.81769 1.01505 1.86123 1.18506 1.29459 1.88105 1.18756 0.82650 0.93317 0.94390 1.21147 0.93309 0.98468 1.10760 1.20606 0.94674 0.94941 0.96680 1.20642 0.84996 0.93787 1.13728 1.98384 1.10119 1.97358 1.97236 1.17102 0.91098 0.83459 0.97801 1.43306 1.28218 1.06068 1.52028 1.21094 0.85295 0.86511 0.77632 1.90685 1.19652 1.82573 1.43922 1.19426 0.86078 0.84446 0.82568 1.90760 1.19430 1.81622 1.47682 1.48130 1.23719 1.10750 1.46638 1.22058 0.85111 1.02737 0.96636 1.19539 0.94501 0.74556 0.98976 1.21371 1.26255 0.98322 1.10800 0.92215 1.24928 0.96668 0.95607 0.96796 1.69925 1.43169 1.03404 1.36735 0.86451 0.80508 0.78061 0.82161 1.20544 1.21019 1.19813 1.20484 0.93055 0.96715 1.06679 0.91401 0.91313 0.90326 0.91819 0.91859 0.84587 0.84229 0.73322 0.93026 0.90965 0.90030 0.94031 0.93479 0.92574 0.82166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.43 16 2 C 0.05 0.35 5.46 37.16 0.20 0.56 16 3 O -0.31 -3.30 10.13 -19.48 -0.20 -3.50 16 4 C 0.16 1.77 6.68 -39.25 -0.26 1.50 16 5 C -0.22 -1.97 9.04 -39.39 -0.36 -2.33 16 6 C -0.05 -0.47 9.82 -39.60 -0.39 -0.86 16 7 C -0.10 -1.21 6.34 -39.29 -0.25 -1.46 16 8 Cl -0.06 -0.70 27.93 -51.86 -1.45 -2.15 16 9 C 0.20 2.75 6.32 -83.73 -0.53 2.22 16 10 N -0.65 -9.77 5.04 -10.28 -0.05 -9.82 16 11 C 0.51 8.93 7.62 -11.63 -0.09 8.84 16 12 O -0.49 -8.64 10.60 5.47 0.06 -8.58 16 13 C 0.49 10.45 7.72 -11.63 -0.09 10.36 16 14 O -0.52 -12.30 16.12 5.49 0.09 -12.22 16 15 N -0.56 -12.26 2.86 -183.50 -0.52 -12.78 16 16 C 0.08 1.40 9.27 59.84 0.55 1.95 16 17 C 0.24 6.27 5.09 -5.19 -0.03 6.24 16 18 C -0.53 -14.87 9.39 -34.44 -0.32 -15.20 16 19 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 22 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.15 -1.99 8.65 -39.24 -0.34 -2.33 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 31 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 32 H 0.14 0.84 6.29 -52.49 -0.33 0.51 16 33 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.43 6.21 7.52 -40.82 -0.31 5.90 16 35 H 0.05 0.84 8.13 -51.93 -0.42 0.41 16 36 H 0.07 1.27 8.03 -51.93 -0.42 0.86 16 37 H 0.08 1.42 5.85 -51.93 -0.30 1.12 16 38 H 0.04 1.08 8.07 -51.93 -0.42 0.66 16 39 H 0.05 1.33 7.51 -51.93 -0.39 0.94 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.16 2.37 6.09 -52.49 -0.32 2.05 16 LS Contribution 365.35 15.07 5.51 5.51 Total: -1.00 -31.94 365.35 -7.40 -39.35 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.94 Total: 2.14 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -1.61 Total: 10.73 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.16 Total: -48.02 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.05 Total: -24.30 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.45 Total: -2.15 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.94 -7.40 -39.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453694020.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.605 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds