Wall clock time and date at job start Sat Apr 11 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.47291 * 2 1 4 4 C 1.35917 * 116.99851 * 180.02562 * 3 2 1 5 5 C 1.38798 * 120.00889 * 359.97438 * 4 3 2 6 6 C 1.38191 * 120.10239 * 179.97438 * 5 4 3 7 7 C 1.38233 * 120.12091 * 0.02562 * 6 5 4 8 8 Cl 1.73601 * 119.99515 * 179.97438 * 7 6 5 9 9 C 1.39038 * 120.01151 * 0.02562 * 7 6 5 10 10 N 1.39760 * 120.05056 * 180.02562 * 9 7 6 11 11 C 1.34771 * 119.99506 * 146.01705 * 10 9 7 12 12 O 1.21379 * 120.00340 * 5.15644 * 11 10 9 13 13 C 1.49358 * 119.99853 * 185.15997 * 11 10 9 14 14 O 1.21355 * 119.99795 * 359.73276 * 13 11 10 15 15 N 1.34771 * 119.99899 * 179.73619 * 13 11 10 16 16 C 1.46496 * 120.00300 * 354.34001 * 15 13 11 17 17 C 1.46509 * 119.99806 * 174.34090 * 15 13 11 18 18 C 1.50704 * 109.46838 * 89.99819 * 17 15 13 19 19 H 1.07997 * 120.00358 * 359.97438 * 18 17 15 20 20 C 1.37877 * 119.99693 * 179.97438 * 18 17 15 21 21 N 1.31518 * 120.00128 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00058 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47200 * 90.00065 * 22 20 18 24 24 H 1.48501 * 109.47209 * 210.00382 * 22 20 18 25 25 H 1.48508 * 109.47258 * 330.00490 * 22 20 18 26 26 C 1.38580 * 120.00379 * 179.72677 * 4 3 2 27 27 H 1.08993 * 109.46990 * 300.00332 * 1 2 3 28 28 H 1.08995 * 109.46895 * 60.00538 * 1 2 3 29 29 H 1.09004 * 109.47145 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47225 * 239.99589 * 2 1 3 31 31 H 1.09003 * 109.46856 * 120.00331 * 2 1 3 32 32 H 1.07995 * 119.94698 * 0.02562 * 5 4 3 33 33 H 1.08007 * 119.93982 * 180.02562 * 6 5 4 34 34 H 0.97003 * 119.99892 * 326.01482 * 10 9 7 35 35 H 1.08997 * 109.47318 * 84.06261 * 16 15 13 36 36 H 1.09003 * 109.46983 * 204.06403 * 16 15 13 37 37 H 1.09000 * 109.47063 * 324.06388 * 16 15 13 38 38 H 1.08993 * 109.47160 * 209.99803 * 17 15 13 39 39 H 1.09004 * 109.46805 * 330.00193 * 17 15 13 40 40 H 0.96997 * 120.00093 * 179.97438 * 21 20 18 41 41 H 1.08000 * 120.05417 * 359.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3539 1.5252 -0.0005 5 6 4.1995 0.4246 -0.0005 6 6 5.5698 0.6033 -0.0016 7 6 6.1030 1.8787 -0.0022 8 17 7.8249 2.0995 -0.0029 9 6 5.2604 2.9847 -0.0011 10 7 5.7986 4.2745 -0.0022 11 6 5.1639 5.2689 -0.6539 12 8 4.0793 5.0674 -1.1602 13 6 5.7951 6.6189 -0.7531 14 8 6.8773 6.8217 -0.2428 15 7 5.1628 7.6118 -1.4094 16 6 3.9175 7.3366 -2.1303 17 6 5.7207 8.9664 -1.4017 18 6 6.6570 9.1306 -2.5712 19 1 6.8204 8.3081 -3.2517 20 6 7.3050 10.3309 -2.7722 21 7 7.1064 11.3324 -1.9432 22 14 8.4660 10.5343 -4.2213 23 1 7.7076 11.0311 -5.3974 24 1 9.5297 11.5093 -3.8703 25 1 9.0839 9.2240 -4.5483 26 6 3.8837 2.8057 -0.0063 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7859 -0.5730 -0.0005 33 1 6.2254 -0.2550 -0.0020 34 1 6.6290 4.4540 0.4660 35 1 3.0782 7.3823 -1.4364 36 1 3.7806 8.0799 -2.9157 37 1 3.9673 6.3428 -2.5752 38 1 4.9119 9.6930 -1.4790 39 1 6.2676 9.1289 -0.4729 40 1 7.5625 12.1767 -2.0844 41 1 3.2267 3.6629 -0.0108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453694020.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:29 Heat of formation + Delta-G solvation = -92.339821 kcal Electronic energy + Delta-G solvation = -26688.939669 eV Core-core repulsion = 22595.183136 eV Total energy + Delta-G solvation = -4093.756533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.34712 -41.13873 -39.88902 -38.77855 -37.36601 -37.06770 -35.73120 -34.67066 -32.88888 -31.28549 -30.28972 -30.01393 -27.82368 -26.48895 -25.10779 -24.22815 -23.69066 -22.23575 -21.08173 -19.76722 -18.82329 -18.75203 -18.00406 -17.64164 -17.33403 -17.09800 -17.06636 -16.98882 -16.42620 -16.11226 -15.40748 -15.05006 -14.83870 -14.75301 -14.58174 -14.23097 -13.89652 -13.75925 -13.70047 -13.63417 -13.41670 -13.24233 -13.05337 -12.90646 -12.62585 -12.45181 -12.34213 -12.25434 -12.16940 -11.94179 -11.78495 -11.72191 -11.29921 -10.65999 -10.44436 -9.74464 -9.60823 -9.13698 -8.25906 -6.40177 -0.24905 0.13693 0.45380 1.01590 1.20256 1.37964 1.40019 1.50978 2.01440 2.12930 2.36219 2.50830 2.55091 3.04699 3.19927 3.62243 3.89119 3.95098 4.11162 4.13825 4.25568 4.36167 4.41844 4.44501 4.66307 4.72252 4.84169 4.86025 4.93028 4.98143 5.02045 5.06442 5.11828 5.15034 5.29688 5.39107 5.48453 5.66572 5.79237 5.97530 6.27627 6.35896 6.54410 6.65792 6.91813 7.29908 8.81859 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015101 B = 0.002749 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.738815 B =10182.235161 C =11489.253029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.042 3.958 3 O -0.329 6.329 4 C 0.152 3.848 5 C -0.198 4.198 6 C -0.040 4.040 7 C -0.108 4.108 8 Cl -0.063 7.063 9 C 0.178 3.822 10 N -0.639 5.639 11 C 0.522 3.478 12 O -0.496 6.496 13 C 0.489 3.511 14 O -0.552 6.552 15 N -0.570 5.570 16 C 0.081 3.919 17 C 0.256 3.744 18 C -0.546 4.546 19 H 0.052 0.948 20 C 0.013 3.987 21 N -0.924 5.924 22 Si 0.968 3.032 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.274 1.274 26 C -0.167 4.167 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.174 0.826 33 H 0.172 0.828 34 H 0.428 0.572 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.037 0.963 39 H 0.013 0.987 40 H 0.269 0.731 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.213 -27.995 4.663 30.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.032 4.032 3 O -0.243 6.243 4 C 0.106 3.894 5 C -0.218 4.218 6 C -0.059 4.059 7 C -0.137 4.137 8 Cl -0.035 7.035 9 C 0.083 3.917 10 N -0.286 5.286 11 C 0.305 3.695 12 O -0.370 6.370 13 C 0.271 3.729 14 O -0.432 6.432 15 N -0.301 5.301 16 C -0.061 4.061 17 C 0.136 3.864 18 C -0.585 4.585 19 H 0.071 0.929 20 C -0.187 4.187 21 N -0.563 5.563 22 Si 0.792 3.208 23 H -0.189 1.189 24 H -0.203 1.203 25 H -0.199 1.199 26 C -0.188 4.188 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.191 0.809 33 H 0.190 0.810 34 H 0.267 0.733 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.055 0.945 39 H 0.031 0.969 40 H 0.078 0.922 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.404 -27.577 4.565 29.826 hybrid contribution 1.328 0.848 -0.317 1.607 sum -9.076 -26.729 4.249 28.546 Atomic orbital electron populations 1.21831 0.91902 1.04265 1.02984 1.23208 0.96731 0.80157 1.03139 1.86120 1.18116 1.32184 1.87889 1.18824 0.83463 0.93120 0.94037 1.21535 0.92766 0.99381 1.08077 1.21012 0.95345 0.94757 0.94791 1.20793 0.84665 0.94202 1.14055 1.98384 1.10379 1.97444 1.97268 1.17220 0.91582 0.82787 1.00113 1.43111 1.27868 1.06434 1.51175 1.20169 0.85266 0.85512 0.78593 1.90686 1.19462 1.82359 1.44503 1.20049 0.85662 0.85760 0.81467 1.90725 1.21002 1.82620 1.48821 1.48113 1.24884 1.09697 1.47370 1.22193 0.83947 1.03107 0.96840 1.19079 0.93805 0.76780 0.96729 1.21601 1.27130 0.98402 1.11354 0.92929 1.25802 0.98146 0.95204 0.99551 1.70028 1.44062 1.03915 1.38315 0.85411 0.78425 0.77912 0.79053 1.18911 1.20346 1.19895 1.20380 0.92801 0.97370 1.08247 0.92103 0.92304 0.87788 0.90258 0.89928 0.80853 0.81023 0.73252 0.91134 0.90765 0.89243 0.94491 0.96900 0.92176 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 71.98 0.74 -0.55 16 2 C 0.04 0.43 5.46 71.98 0.39 0.82 16 3 O -0.33 -6.49 10.13 -92.62 -0.94 -7.42 16 4 C 0.15 3.18 6.68 22.49 0.15 3.33 16 5 C -0.20 -2.86 9.04 22.39 0.20 -2.65 16 6 C -0.04 -0.62 9.82 22.26 0.22 -0.40 16 7 C -0.11 -2.38 6.34 22.46 0.14 -2.24 16 8 Cl -0.06 -1.43 27.93 -2.72 -0.08 -1.50 16 9 C 0.18 4.77 6.32 38.21 0.24 5.02 16 10 N -0.64 -19.61 5.04 -304.80 -1.54 -21.15 16 11 C 0.52 18.68 7.62 87.24 0.66 19.35 16 12 O -0.50 -17.51 10.60 -3.34 -0.04 -17.54 16 13 C 0.49 21.42 7.72 87.24 0.67 22.10 16 14 O -0.55 -27.47 16.12 -3.26 -0.05 -27.52 16 15 N -0.57 -25.69 2.86 -852.83 -2.44 -28.13 16 16 C 0.08 2.92 9.27 127.77 1.18 4.10 16 17 C 0.26 13.78 5.09 85.63 0.44 14.22 16 18 C -0.55 -31.47 9.39 25.60 0.24 -31.23 16 19 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 20 C 0.01 0.72 5.46 84.65 0.46 1.19 16 21 N -0.92 -54.97 13.29 21.45 0.28 -54.69 16 22 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 25 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 26 C -0.17 -4.43 8.65 22.49 0.19 -4.24 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.08 0.57 7.66 -2.39 -0.02 0.56 16 31 H 0.08 0.54 7.66 -2.39 -0.02 0.52 16 32 H 0.17 1.19 6.29 -2.91 -0.02 1.17 16 33 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.43 12.82 7.52 -92.71 -0.70 12.12 16 35 H 0.07 2.27 8.13 -2.39 -0.02 2.25 16 36 H 0.07 2.62 8.03 -2.39 -0.02 2.60 16 37 H 0.09 3.11 5.85 -2.39 -0.01 3.09 16 38 H 0.04 1.99 8.07 -2.39 -0.02 1.97 16 39 H 0.01 0.77 7.51 -2.38 -0.02 0.76 16 40 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 41 H 0.14 4.24 6.09 -2.91 -0.02 4.22 16 Total: -1.00 -70.92 365.35 3.56 -67.36 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.39 Total: 15.00 kcal Atomic # 6 Polarization: 22.85 SS G_CDS: 5.94 Total: 28.80 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -3.69 Total: -103.96 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -1.03 Total: -52.49 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.50 kcal Total: -70.92 3.56 -67.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453694020.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.985 kcal (2) G-P(sol) polarization free energy of solvation -70.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds