Wall clock time and date at job start Sat Apr 11 2020 05:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42896 * 109.46815 * 2 1 4 4 C 1.35923 * 116.99661 * 179.97438 * 3 2 1 5 5 C 1.38796 * 120.00801 * 0.02562 * 4 3 2 6 6 C 1.38192 * 120.10616 * 179.97438 * 5 4 3 7 7 C 1.38234 * 120.11913 * 0.02562 * 6 5 4 8 8 Cl 1.73595 * 119.99494 * 180.02562 * 7 6 5 9 9 C 1.39034 * 120.01017 * 0.02600 * 7 6 5 10 10 N 1.39758 * 120.05551 * 179.97438 * 9 7 6 11 11 C 1.34776 * 120.00543 * 204.50477 * 10 9 7 12 12 O 1.21380 * 119.99732 * 5.52757 * 11 10 9 13 13 C 1.49344 * 120.00188 * 185.52269 * 11 10 9 14 14 O 1.21356 * 120.00215 * 0.02562 * 13 11 10 15 15 N 1.34785 * 119.99789 * 179.97438 * 13 11 10 16 16 C 1.46499 * 119.99487 * 180.02562 * 15 13 11 17 17 C 1.53009 * 109.46638 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.46975 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99746 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00290 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00132 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99455 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46571 * 90.00313 * 22 20 18 24 24 H 1.48493 * 109.46923 * 209.99922 * 22 20 18 25 25 H 1.48497 * 109.47461 * 330.00530 * 22 20 18 26 26 C 1.38572 * 120.00423 * 179.72571 * 4 3 2 27 27 H 1.09001 * 109.46885 * 60.00006 * 1 2 3 28 28 H 1.08996 * 109.46735 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46757 * 299.99972 * 1 2 3 30 30 H 1.08997 * 109.47142 * 240.00392 * 2 1 3 31 31 H 1.08994 * 109.46946 * 120.00399 * 2 1 3 32 32 H 1.07998 * 119.94485 * 359.97438 * 5 4 3 33 33 H 1.08003 * 119.94378 * 180.02562 * 6 5 4 34 34 H 0.97006 * 119.99669 * 24.50210 * 10 9 7 35 35 H 0.97000 * 120.00122 * 0.02562 * 15 13 11 36 36 H 1.09001 * 109.47535 * 299.99967 * 16 15 13 37 37 H 1.08992 * 109.47527 * 60.00718 * 16 15 13 38 38 H 1.08995 * 109.46759 * 299.99542 * 17 16 15 39 39 H 1.08992 * 109.46925 * 59.99920 * 17 16 15 40 40 H 0.96996 * 119.99833 * 179.97438 * 21 20 18 41 41 H 1.08005 * 120.05937 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3538 1.5253 0.0005 5 6 4.1995 0.4247 0.0005 6 6 5.5698 0.6035 0.0005 7 6 6.1030 1.8788 0.0011 8 17 7.8249 2.0996 0.0005 9 6 5.2605 2.9848 0.0022 10 7 5.7985 4.2746 0.0033 11 6 5.0779 5.3051 0.4884 12 8 4.0040 5.0997 1.0155 13 6 5.6008 6.6996 0.3776 14 8 6.6743 6.9051 -0.1497 15 7 4.8798 7.7301 0.8623 16 6 5.3925 9.0981 0.7530 17 6 4.3889 10.0702 1.3767 18 6 4.9159 11.4775 1.2638 19 1 5.8714 11.6602 0.7945 20 6 4.1784 12.5317 1.7595 21 7 4.6382 13.7599 1.6605 22 14 2.5256 12.2156 2.5704 23 1 2.7227 11.9930 4.0254 24 1 1.6406 13.3901 2.3648 25 1 1.8996 11.0123 1.9660 26 6 3.8836 2.8058 -0.0052 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.7859 -0.5729 0.0005 33 1 6.2254 -0.2548 0.0001 34 1 6.6907 4.4282 -0.3451 35 1 4.0216 7.5660 1.2834 36 1 6.3445 9.1725 1.2787 37 1 5.5371 9.3492 -0.2977 38 1 3.4368 9.9960 0.8513 39 1 4.2447 9.8190 2.4274 40 1 4.1191 14.5015 2.0089 41 1 3.2266 3.6630 -0.0096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453709957.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:36 Heat of formation + Delta-G solvation = -88.914635 kcal Electronic energy + Delta-G solvation = -25843.660855 eV Core-core repulsion = 21750.052850 eV Total energy + Delta-G solvation = -4093.608005 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.38574 -40.29509 -38.93887 -37.96094 -36.58788 -35.65035 -34.77746 -32.85350 -32.41781 -30.61536 -30.28093 -29.56225 -26.24782 -24.71985 -23.76271 -23.25196 -21.76709 -20.94315 -20.34095 -19.28385 -18.28665 -17.22148 -16.97652 -16.73731 -16.61575 -16.52786 -16.05967 -15.67420 -15.01469 -14.74864 -14.24499 -14.20334 -14.16095 -13.96357 -13.73114 -13.29210 -13.18936 -13.09115 -12.84911 -12.64195 -12.58887 -11.86801 -11.78788 -11.57516 -11.49360 -11.35493 -11.28515 -11.11933 -10.69840 -10.48187 -10.34275 -9.98473 -9.58676 -9.36763 -8.88853 -8.83886 -8.63767 -8.40923 -6.14198 -4.15226 0.55518 0.83650 1.45034 1.75086 2.12111 2.72853 3.04367 3.25301 3.31048 3.33476 3.34835 3.57306 4.23918 4.35983 4.44977 4.45298 4.49001 4.51907 4.65767 4.76645 4.90385 5.07101 5.18828 5.31251 5.33473 5.44101 5.57284 5.68080 5.70112 5.88964 5.91684 6.05430 6.20934 6.38093 6.43831 6.69355 6.95409 7.00547 7.14624 7.32403 7.57810 7.63659 8.05554 8.39226 8.88896 9.45524 10.98485 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.002373 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.150113 B =11796.976792 C =13868.338028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.053 3.947 3 O -0.308 6.308 4 C 0.161 3.839 5 C -0.218 4.218 6 C -0.045 4.045 7 C -0.106 4.106 8 Cl -0.061 7.061 9 C 0.203 3.797 10 N -0.643 5.643 11 C 0.511 3.489 12 O -0.490 6.490 13 C 0.502 3.498 14 O -0.521 6.521 15 N -0.686 5.686 16 C 0.126 3.874 17 C -0.024 4.024 18 C -0.525 4.525 19 H 0.077 0.923 20 C 0.071 3.929 21 N -0.897 5.897 22 Si 0.881 3.119 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.265 1.265 26 C -0.158 4.158 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.428 0.572 35 H 0.410 0.590 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.021 0.979 40 H 0.265 0.735 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.944 -33.158 -4.089 33.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.022 4.022 3 O -0.221 6.221 4 C 0.114 3.886 5 C -0.238 4.238 6 C -0.064 4.064 7 C -0.136 4.136 8 Cl -0.032 7.032 9 C 0.106 3.894 10 N -0.290 5.290 11 C 0.293 3.707 12 O -0.363 6.363 13 C 0.281 3.719 14 O -0.398 6.398 15 N -0.337 5.337 16 C 0.005 3.995 17 C -0.062 4.062 18 C -0.563 4.563 19 H 0.095 0.905 20 C -0.132 4.132 21 N -0.534 5.534 22 Si 0.708 3.292 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.189 1.189 26 C -0.179 4.179 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.268 0.732 35 H 0.246 0.754 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.988 -32.650 -4.049 33.035 hybrid contribution -0.527 -0.262 0.517 0.783 sum -3.516 -32.912 -3.532 33.287 Atomic orbital electron populations 1.21791 0.92461 1.02955 1.03875 1.22864 0.96192 0.81611 1.01556 1.86136 1.18394 1.29633 1.87935 1.18743 0.82770 0.93229 0.93850 1.21177 0.93302 0.98579 1.10752 1.20613 0.94694 0.94922 0.96216 1.20509 0.84766 0.93709 1.14590 1.98377 1.10249 1.97288 1.97314 1.17074 0.91302 0.83146 0.97858 1.43253 1.20867 1.04696 1.60174 1.20724 0.84957 0.86825 0.78161 1.90754 1.20861 1.85001 1.39669 1.19609 0.85743 0.85292 0.81281 1.90784 1.21014 1.84931 1.43072 1.46211 1.23150 1.07506 1.56861 1.21776 0.98944 0.76697 1.02065 1.19831 0.95032 0.95257 0.96031 1.20860 1.07176 0.88363 1.39920 0.90507 1.24986 0.97918 0.94942 0.95332 1.69892 1.38608 0.98804 1.46144 0.86767 0.84143 0.78153 0.80152 1.20144 1.21219 1.18942 1.20519 0.92951 0.97055 1.07349 0.91347 0.90244 0.91285 0.91774 0.91754 0.84442 0.84078 0.73197 0.75432 0.91041 0.91011 0.95661 0.96098 0.92472 0.81856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.28 37.16 0.38 -0.36 16 2 C 0.05 0.31 5.46 37.16 0.20 0.51 16 3 O -0.31 -3.03 10.13 -19.50 -0.20 -3.23 16 4 C 0.16 1.64 6.68 -39.25 -0.26 1.38 16 5 C -0.22 -1.70 9.04 -39.39 -0.36 -2.06 16 6 C -0.05 -0.36 9.82 -39.60 -0.39 -0.75 16 7 C -0.11 -1.05 6.34 -39.29 -0.25 -1.30 16 8 Cl -0.06 -0.57 27.77 -51.86 -1.44 -2.01 16 9 C 0.20 2.35 6.43 -83.72 -0.54 1.81 16 10 N -0.64 -7.86 5.18 -10.28 -0.05 -7.91 16 11 C 0.51 7.19 7.69 -11.64 -0.09 7.10 16 12 O -0.49 -7.43 13.64 5.47 0.07 -7.36 16 13 C 0.50 8.00 7.89 -11.63 -0.09 7.91 16 14 O -0.52 -9.31 16.48 5.49 0.09 -9.22 16 15 N -0.69 -11.29 5.55 -60.76 -0.34 -11.63 16 16 C 0.13 2.45 5.61 -4.04 -0.02 2.43 16 17 C -0.02 -0.53 4.16 -27.88 -0.12 -0.65 16 18 C -0.52 -14.38 9.66 -34.44 -0.33 -14.71 16 19 H 0.08 2.26 7.99 -52.48 -0.42 1.85 16 20 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 21 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 22 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 26 C -0.16 -1.89 8.65 -39.23 -0.34 -2.23 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 31 H 0.06 0.30 7.66 -51.93 -0.40 -0.09 16 32 H 0.14 0.69 6.29 -52.49 -0.33 0.36 16 33 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 34 H 0.43 4.88 7.22 -40.82 -0.29 4.58 16 35 H 0.41 6.17 7.94 -40.82 -0.32 5.84 16 36 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.03 0.56 7.20 -51.93 -0.37 0.18 16 39 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.16 2.20 5.79 -52.48 -0.30 1.90 16 LS Contribution 366.49 15.07 5.52 5.52 Total: -1.00 -31.62 366.49 -7.47 -39.09 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -4.94 Total: 5.67 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -2.30 Total: 1.00 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.38 Total: -45.72 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.03 Total: -19.81 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.44 Total: -2.01 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.62 -7.47 -39.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453709957.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.821 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds