Wall clock time and date at job start Sat Apr 11 2020 05:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42896 * 109.46815 * 2 1 4 4 C 1.35923 * 116.99661 * 179.97438 * 3 2 1 5 5 C 1.38796 * 120.00801 * 0.02562 * 4 3 2 6 6 C 1.38192 * 120.10616 * 179.97438 * 5 4 3 7 7 C 1.38234 * 120.11913 * 0.02562 * 6 5 4 8 8 Cl 1.73595 * 119.99494 * 180.02562 * 7 6 5 9 9 C 1.39034 * 120.01017 * 0.02600 * 7 6 5 10 10 N 1.39758 * 120.05551 * 179.97438 * 9 7 6 11 11 C 1.34776 * 120.00543 * 204.50477 * 10 9 7 12 12 O 1.21380 * 119.99732 * 5.52757 * 11 10 9 13 13 C 1.49344 * 120.00188 * 185.52269 * 11 10 9 14 14 O 1.21356 * 120.00215 * 0.02562 * 13 11 10 15 15 N 1.34785 * 119.99789 * 179.97438 * 13 11 10 16 16 C 1.46499 * 119.99487 * 180.02562 * 15 13 11 17 17 C 1.53009 * 109.46638 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.46975 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99746 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00290 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00132 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99455 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46571 * 90.00313 * 22 20 18 24 24 H 1.48493 * 109.46923 * 209.99922 * 22 20 18 25 25 H 1.48497 * 109.47461 * 330.00530 * 22 20 18 26 26 C 1.38572 * 120.00423 * 179.72571 * 4 3 2 27 27 H 1.09001 * 109.46885 * 60.00006 * 1 2 3 28 28 H 1.08996 * 109.46735 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46757 * 299.99972 * 1 2 3 30 30 H 1.08997 * 109.47142 * 240.00392 * 2 1 3 31 31 H 1.08994 * 109.46946 * 120.00399 * 2 1 3 32 32 H 1.07998 * 119.94485 * 359.97438 * 5 4 3 33 33 H 1.08003 * 119.94378 * 180.02562 * 6 5 4 34 34 H 0.97006 * 119.99669 * 24.50210 * 10 9 7 35 35 H 0.97000 * 120.00122 * 0.02562 * 15 13 11 36 36 H 1.09001 * 109.47535 * 299.99967 * 16 15 13 37 37 H 1.08992 * 109.47527 * 60.00718 * 16 15 13 38 38 H 1.08995 * 109.46759 * 299.99542 * 17 16 15 39 39 H 1.08992 * 109.46925 * 59.99920 * 17 16 15 40 40 H 0.96996 * 119.99833 * 179.97438 * 21 20 18 41 41 H 1.08005 * 120.05937 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3538 1.5253 0.0005 5 6 4.1995 0.4247 0.0005 6 6 5.5698 0.6035 0.0005 7 6 6.1030 1.8788 0.0011 8 17 7.8249 2.0996 0.0005 9 6 5.2605 2.9848 0.0022 10 7 5.7985 4.2746 0.0033 11 6 5.0779 5.3051 0.4884 12 8 4.0040 5.0997 1.0155 13 6 5.6008 6.6996 0.3776 14 8 6.6743 6.9051 -0.1497 15 7 4.8798 7.7301 0.8623 16 6 5.3925 9.0981 0.7530 17 6 4.3889 10.0702 1.3767 18 6 4.9159 11.4775 1.2638 19 1 5.8714 11.6602 0.7945 20 6 4.1784 12.5317 1.7595 21 7 4.6382 13.7599 1.6605 22 14 2.5256 12.2156 2.5704 23 1 2.7227 11.9930 4.0254 24 1 1.6406 13.3901 2.3648 25 1 1.8996 11.0123 1.9660 26 6 3.8836 2.8058 -0.0052 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.7859 -0.5729 0.0005 33 1 6.2254 -0.2548 0.0001 34 1 6.6907 4.4282 -0.3451 35 1 4.0216 7.5660 1.2834 36 1 6.3445 9.1725 1.2787 37 1 5.5371 9.3492 -0.2977 38 1 3.4368 9.9960 0.8513 39 1 4.2447 9.8190 2.4274 40 1 4.1191 14.5015 2.0089 41 1 3.2266 3.6630 -0.0096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453709957.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:36 Heat of formation + Delta-G solvation = -110.963745 kcal Electronic energy + Delta-G solvation = -25844.616976 eV Core-core repulsion = 21750.052850 eV Total energy + Delta-G solvation = -4094.564127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.40383 -41.16383 -40.04894 -38.83267 -37.34602 -37.01277 -35.91682 -34.80588 -32.90888 -32.18381 -31.28536 -30.29161 -27.75696 -25.88570 -24.55074 -24.13829 -22.78607 -22.45894 -21.47948 -20.24675 -19.29212 -19.03381 -18.09910 -17.67794 -17.43261 -17.21363 -17.07035 -16.80436 -16.26033 -16.22083 -15.93678 -15.28184 -15.04033 -14.89462 -14.76730 -14.61422 -14.44171 -13.79369 -13.69196 -13.44425 -13.39632 -13.20648 -13.08736 -12.77741 -12.53291 -12.25744 -12.22281 -12.19291 -12.02302 -11.83346 -11.78857 -11.51350 -11.34617 -10.82146 -10.79527 -10.32079 -9.67206 -9.14593 -8.30456 -6.37273 -0.34961 0.11478 0.40368 0.93692 1.09307 1.39602 1.41130 1.52161 1.89659 2.06376 2.36018 2.47165 2.50364 3.04831 3.19676 3.59427 3.86300 3.93731 4.09131 4.09800 4.22351 4.23795 4.37645 4.38555 4.40381 4.67556 4.71263 4.83321 4.91510 4.95759 4.96057 5.00154 5.13535 5.26102 5.28271 5.36158 5.44160 5.57358 5.68366 6.12298 6.21410 6.33759 6.44434 6.69087 6.77080 7.27293 8.85746 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.002373 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.150113 B =11796.976792 C =13868.338028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.042 3.958 3 O -0.331 6.331 4 C 0.154 3.846 5 C -0.203 4.203 6 C -0.037 4.037 7 C -0.111 4.111 8 Cl -0.059 7.059 9 C 0.183 3.817 10 N -0.634 5.634 11 C 0.519 3.481 12 O -0.502 6.502 13 C 0.506 3.494 14 O -0.541 6.541 15 N -0.682 5.682 16 C 0.141 3.859 17 C -0.018 4.018 18 C -0.535 4.535 19 H 0.037 0.963 20 C 0.007 3.993 21 N -0.947 5.947 22 Si 0.952 3.048 23 H -0.266 1.266 24 H -0.286 1.286 25 H -0.240 1.240 26 C -0.179 4.179 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.172 0.828 33 H 0.173 0.827 34 H 0.431 0.569 35 H 0.419 0.581 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.037 0.963 39 H 0.035 0.965 40 H 0.268 0.732 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.273 -37.011 -3.626 37.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.032 4.032 3 O -0.245 6.245 4 C 0.107 3.893 5 C -0.222 4.222 6 C -0.056 4.056 7 C -0.140 4.140 8 Cl -0.030 7.030 9 C 0.087 3.913 10 N -0.281 5.281 11 C 0.301 3.699 12 O -0.376 6.376 13 C 0.286 3.714 14 O -0.419 6.419 15 N -0.334 5.334 16 C 0.019 3.981 17 C -0.056 4.056 18 C -0.574 4.574 19 H 0.055 0.945 20 C -0.190 4.190 21 N -0.587 5.587 22 Si 0.775 3.225 23 H -0.191 1.191 24 H -0.212 1.212 25 H -0.164 1.164 26 C -0.200 4.200 27 H 0.078 0.922 28 H 0.122 0.878 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.190 0.810 33 H 0.190 0.810 34 H 0.271 0.729 35 H 0.257 0.743 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.316 -36.563 -3.597 36.992 hybrid contribution -0.053 0.828 0.305 0.884 sum -4.370 -35.734 -3.292 36.150 Atomic orbital electron populations 1.21836 0.91996 1.04270 1.02957 1.23202 0.96670 0.80134 1.03163 1.86124 1.18271 1.32204 1.87852 1.18849 0.83426 0.93220 0.93816 1.21533 0.92919 0.99324 1.08421 1.21018 0.95220 0.94941 0.94416 1.20660 0.84746 0.93991 1.14599 1.98380 1.10009 1.97346 1.97306 1.17184 0.91558 0.82945 0.99632 1.43126 1.20647 1.04830 1.59468 1.20184 0.84879 0.86238 0.78598 1.90762 1.21299 1.84961 1.40597 1.19881 0.85189 0.85992 0.80314 1.90773 1.21930 1.85437 1.43807 1.45953 1.23631 1.06494 1.57287 1.21345 0.97877 0.77834 1.01092 1.19702 0.95766 0.92879 0.97206 1.21191 1.05864 0.91286 1.39051 0.94514 1.25992 1.02452 0.94467 0.96118 1.70052 1.40684 1.00079 1.47900 0.85630 0.78663 0.78829 0.79356 1.19116 1.21222 1.16354 1.20433 0.92982 0.97507 1.09112 0.92159 0.87781 0.92331 0.89923 0.90183 0.81037 0.80964 0.72881 0.74341 0.91926 0.91926 0.94520 0.94662 0.92319 0.84079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 71.99 0.74 -0.45 16 2 C 0.04 0.39 5.46 71.99 0.39 0.78 16 3 O -0.33 -6.08 10.13 -92.68 -0.94 -7.02 16 4 C 0.15 2.90 6.68 22.48 0.15 3.05 16 5 C -0.20 -2.48 9.04 22.39 0.20 -2.27 16 6 C -0.04 -0.46 9.82 22.26 0.22 -0.24 16 7 C -0.11 -1.98 6.34 22.46 0.14 -1.84 16 8 Cl -0.06 -1.02 27.77 -2.72 -0.08 -1.09 16 9 C 0.18 4.11 6.43 38.21 0.25 4.36 16 10 N -0.63 -15.37 5.18 -304.80 -1.58 -16.95 16 11 C 0.52 14.59 7.69 87.24 0.67 15.26 16 12 O -0.50 -15.23 13.64 -3.34 -0.05 -15.28 16 13 C 0.51 16.08 7.89 87.23 0.69 16.77 16 14 O -0.54 -19.46 16.48 -3.26 -0.05 -19.51 16 15 N -0.68 -22.07 5.55 -464.51 -2.58 -24.65 16 16 C 0.14 5.49 5.61 86.38 0.48 5.97 16 17 C -0.02 -0.78 4.16 29.85 0.12 -0.65 16 18 C -0.54 -29.94 9.66 25.60 0.25 -29.69 16 19 H 0.04 2.27 7.99 -2.91 -0.02 2.25 16 20 C 0.01 0.42 5.47 84.66 0.46 0.88 16 21 N -0.95 -58.50 13.96 21.45 0.30 -58.20 16 22 Si 0.95 42.61 27.47 68.60 1.88 44.49 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 25 H -0.24 -9.73 6.54 99.48 0.65 -9.08 16 26 C -0.18 -4.26 8.65 22.50 0.19 -4.06 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.45 7.66 -2.39 -0.02 0.43 16 31 H 0.08 0.48 7.66 -2.39 -0.02 0.46 16 32 H 0.17 0.88 6.29 -2.91 -0.02 0.86 16 33 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.43 9.74 7.22 -92.70 -0.67 9.07 16 35 H 0.42 12.12 7.94 -92.71 -0.74 11.38 16 36 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 39 H 0.04 1.46 7.57 -2.39 -0.02 1.44 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.14 3.94 5.79 -2.91 -0.02 3.92 16 Total: -1.00 -70.32 366.49 1.52 -68.81 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -0.36 Total: 21.57 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 4.96 Total: 7.84 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -3.86 Total: -99.81 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -1.04 Total: -41.81 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.49 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.09 kcal Total: -70.32 1.52 -68.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453709957.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.155 kcal (2) G-P(sol) polarization free energy of solvation -70.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds