Wall clock time and date at job start Sat Apr 11 2020 05:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00321 * 2 1 4 4 O 1.20822 * 119.99726 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99918 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.46749 * 60.00649 * 5 3 2 7 7 C 1.53000 * 109.47354 * 300.00232 * 5 3 2 8 8 C 1.52999 * 109.46901 * 179.97438 * 5 3 2 9 9 N 1.46501 * 109.47056 * 185.00089 * 8 5 3 10 10 C 1.34779 * 119.99688 * 180.02562 * 9 8 5 11 11 O 1.21583 * 120.00395 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99544 * 179.72748 * 10 9 8 13 13 C 1.39278 * 119.99968 * 176.02692 * 12 10 9 14 14 C 1.39462 * 119.83628 * 34.72854 * 13 12 10 15 15 C 1.36382 * 120.17357 * 179.76163 * 14 13 12 16 16 C 1.40883 * 119.85010 * 0.53816 * 15 14 13 17 17 C 1.41155 * 120.15608 * 179.73865 * 16 15 14 18 18 H 1.07995 * 120.00178 * 34.75714 * 17 16 15 19 19 C 1.39890 * 119.99774 * 214.75040 * 17 16 15 20 20 N 1.30883 * 120.00217 * 355.59348 * 19 17 16 21 21 Si 1.86805 * 119.99846 * 175.59526 * 19 17 16 22 22 H 1.48500 * 109.47254 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46937 * 120.00286 * 21 19 17 24 24 H 1.48497 * 109.46996 * 240.00030 * 21 19 17 25 25 C 1.40847 * 119.68455 * 359.71898 * 16 15 14 26 26 C 1.36472 * 119.81404 * 359.97438 * 25 16 15 27 27 Cl 1.73603 * 119.91923 * 180.02562 * 26 25 16 28 28 H 1.09001 * 109.47453 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47245 * 299.99996 * 1 2 3 30 30 H 1.08997 * 109.47407 * 59.99939 * 1 2 3 31 31 H 1.08996 * 109.46872 * 59.99900 * 7 5 3 32 32 H 1.09000 * 109.46656 * 179.97438 * 7 5 3 33 33 H 1.09004 * 109.46794 * 299.99912 * 7 5 3 34 34 H 1.09003 * 109.46661 * 65.00342 * 8 5 3 35 35 H 1.09000 * 109.47763 * 305.00619 * 8 5 3 36 36 H 0.96992 * 120.00062 * 0.02562 * 9 8 5 37 37 H 0.96997 * 120.00194 * 356.02476 * 12 10 9 38 38 H 1.07999 * 119.91655 * 0.02562 * 14 13 12 39 39 H 1.08001 * 120.07218 * 180.25307 * 15 14 13 40 40 H 0.97002 * 119.99878 * 179.97438 * 20 19 17 41 41 H 1.07998 * 120.09051 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9564 0.7805 -0.8893 7 6 4.1129 0.5813 1.2501 8 6 4.0002 2.7419 -0.0002 9 7 5.4582 2.8199 -0.1200 10 6 6.0693 4.0211 -0.1415 11 8 5.4105 5.0398 -0.0609 12 7 7.4110 4.0927 -0.2462 13 6 8.0361 5.3328 -0.3518 14 6 7.5140 6.4331 0.3278 15 6 8.1233 7.6495 0.2332 16 6 9.2766 7.7962 -0.5626 17 6 9.9092 9.0535 -0.6695 18 1 9.9292 9.7218 0.1786 19 6 10.5103 9.4338 -1.8740 20 7 10.5622 8.5912 -2.8742 21 14 11.2392 11.1442 -2.0549 22 1 11.0535 11.8979 -0.7889 23 1 12.6889 11.0350 -2.3574 24 1 10.5550 11.8592 -3.1621 25 6 9.7955 6.6821 -1.2506 26 6 9.1788 5.4696 -1.1414 27 17 9.8165 4.0945 -1.9877 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.8038 -0.4639 1.2502 32 1 5.2015 0.6380 1.2502 33 1 3.7229 1.0757 2.1399 34 1 3.6864 3.2140 0.9308 35 1 3.5383 3.2570 -0.8424 36 1 5.9838 2.0072 -0.1839 37 1 7.9414 3.2806 -0.2480 38 1 6.6273 6.3206 0.9340 39 1 7.7199 8.4996 0.7634 40 1 10.9787 8.8551 -3.7096 41 1 10.6795 6.7870 -1.8621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455705231.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:51 Heat of formation + Delta-G solvation = -124.056414 kcal Electronic energy + Delta-G solvation = -26159.193684 eV Core-core repulsion = 22064.061817 eV Total energy + Delta-G solvation = -4095.131867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.82535 -41.37226 -39.48573 -37.88349 -37.20194 -36.94499 -36.04325 -34.83291 -33.59116 -31.27862 -30.74731 -28.73921 -27.83975 -26.60940 -24.69525 -23.52606 -22.72176 -21.83962 -21.35620 -19.69055 -19.23242 -18.72541 -18.26037 -17.74975 -17.31200 -17.18484 -16.73048 -16.08277 -16.01829 -15.78284 -15.33458 -15.09676 -14.73549 -14.61969 -14.34037 -14.19852 -14.04642 -13.82278 -13.42916 -13.39041 -13.17501 -12.91270 -12.80492 -12.66568 -12.53375 -12.26512 -12.15975 -11.93072 -11.83027 -11.75459 -11.54767 -11.50116 -11.29146 -11.05301 -10.73389 -10.18004 -9.36823 -8.76874 -8.52584 -6.36521 0.66307 0.98716 1.07378 1.32464 1.41911 1.42376 1.49889 1.57252 1.95869 2.16229 2.24976 2.75697 3.30566 3.37015 3.56318 3.76998 3.83006 4.15328 4.31021 4.32279 4.37181 4.59660 4.65328 4.71222 4.74140 4.84935 4.92502 4.95911 5.02717 5.20773 5.24038 5.31070 5.32921 5.36838 5.49796 5.68206 5.88842 5.99917 6.15189 6.26192 6.55178 6.62429 6.89022 6.92537 7.07490 7.58806 8.39671 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.023065 B = 0.002178 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.682984 B =12853.750440 C =13520.456076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.354 6.354 3 C 0.470 3.530 4 O -0.540 6.540 5 C -0.083 4.083 6 H 0.147 0.853 7 C -0.142 4.142 8 C 0.158 3.842 9 N -0.722 5.722 10 C 0.697 3.303 11 O -0.619 6.619 12 N -0.656 5.656 13 C 0.047 3.953 14 C -0.084 4.084 15 C -0.210 4.210 16 C 0.076 3.924 17 C -0.488 4.488 18 H 0.080 0.920 19 C 0.028 3.972 20 N -0.836 5.836 21 Si 0.989 3.011 22 H -0.258 1.258 23 H -0.264 1.264 24 H -0.271 1.271 25 C -0.151 4.151 26 C -0.029 4.029 27 Cl -0.085 7.085 28 H 0.135 0.865 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.416 0.584 37 H 0.413 0.587 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.286 0.714 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.182 -20.453 4.173 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.270 6.270 3 C 0.314 3.686 4 O -0.429 6.429 5 C -0.103 4.103 6 H 0.164 0.836 7 C -0.200 4.200 8 C 0.033 3.967 9 N -0.380 5.380 10 C 0.398 3.602 11 O -0.499 6.499 12 N -0.304 5.304 13 C -0.049 4.049 14 C -0.104 4.104 15 C -0.230 4.230 16 C 0.073 3.927 17 C -0.518 4.518 18 H 0.099 0.901 19 C -0.185 4.185 20 N -0.464 5.464 21 Si 0.810 3.190 22 H -0.181 1.181 23 H -0.189 1.189 24 H -0.196 1.196 25 C -0.172 4.172 26 C -0.058 4.058 27 Cl -0.057 7.057 28 H 0.153 0.847 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.254 0.746 37 H 0.250 0.750 38 H 0.138 0.862 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.917 -19.466 3.932 22.661 hybrid contribution 0.377 0.312 -0.466 0.676 sum -10.539 -19.153 3.466 22.134 Atomic orbital electron populations 1.23571 0.74776 1.05854 1.02433 1.86476 1.24859 1.32122 1.83532 1.23802 0.92248 0.81311 0.71231 1.90728 1.68067 1.37632 1.46511 1.21154 0.86919 0.96560 1.05622 0.83563 1.21846 1.02919 1.01483 0.93706 1.20819 0.78661 0.95043 1.02155 1.44647 1.07406 1.06387 1.79588 1.16045 0.81758 0.84323 0.78071 1.90908 1.65154 1.35450 1.58424 1.41807 1.04747 1.07540 1.76288 1.16700 0.96941 0.86626 1.04616 1.20523 0.99127 0.92088 0.98693 1.21043 0.97648 0.97090 1.07212 1.17915 0.90722 0.93199 0.90830 1.19753 1.32066 1.01186 0.98810 0.90136 1.26767 0.93745 1.03336 0.94672 1.69819 1.35216 1.37199 1.04126 0.85036 0.78231 0.76487 0.79206 1.18126 1.18882 1.19595 1.21089 1.02096 0.89479 1.04555 1.20399 0.97901 0.88836 0.98656 1.98243 1.86579 1.43738 1.77120 0.84673 0.92113 0.92211 0.89064 0.89100 0.92589 0.92298 0.92867 0.74611 0.75000 0.86175 0.87448 0.90305 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.35 -5.21 10.47 -51.40 -0.54 -5.75 16 3 C 0.47 8.80 7.26 71.24 0.52 9.31 16 4 O -0.54 -14.54 15.67 21.98 0.34 -14.20 16 5 C -0.08 -1.13 2.86 -11.54 -0.03 -1.16 16 6 H 0.15 1.18 8.14 -2.38 -0.02 1.16 16 7 C -0.14 -1.29 9.00 71.98 0.65 -0.64 16 8 C 0.16 3.53 4.41 86.38 0.38 3.91 16 9 N -0.72 -15.87 5.29 -478.53 -2.53 -18.40 16 10 C 0.70 23.67 8.40 179.05 1.50 25.17 16 11 O -0.62 -27.44 13.73 -3.98 -0.05 -27.49 16 12 N -0.66 -22.05 5.02 -316.70 -1.59 -23.64 16 13 C 0.05 2.03 6.32 38.58 0.24 2.27 16 14 C -0.08 -3.97 8.61 22.13 0.19 -3.78 16 15 C -0.21 -10.56 9.74 22.48 0.22 -10.34 16 16 C 0.08 4.10 5.55 -21.28 -0.12 3.98 16 17 C -0.49 -25.95 9.02 23.39 0.21 -25.74 16 18 H 0.08 4.11 7.85 -2.91 -0.02 4.09 16 19 C 0.03 1.38 5.42 85.23 0.46 1.84 16 20 N -0.84 -43.53 10.59 21.82 0.23 -43.30 16 21 Si 0.99 38.44 29.56 68.60 2.03 40.47 16 22 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 24 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 25 C -0.15 -7.80 8.38 22.50 0.19 -7.62 16 26 C -0.03 -1.31 6.30 22.18 0.14 -1.17 16 27 Cl -0.09 -3.09 27.92 -2.72 -0.08 -3.17 16 28 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 30 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 31 H 0.09 0.56 8.11 -2.39 -0.02 0.54 16 32 H 0.09 0.56 7.18 -2.39 -0.02 0.55 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.48 7.96 -2.39 -0.02 1.46 16 36 H 0.42 5.50 7.67 -92.71 -0.71 4.79 16 37 H 0.41 10.80 8.07 -92.71 -0.75 10.05 16 38 H 0.12 5.66 6.18 -2.91 -0.02 5.64 16 39 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 40 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 41 H 0.13 6.97 6.13 -2.91 -0.02 6.95 16 Total: -1.00 -71.75 365.73 3.20 -68.55 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: -0.36 Total: 29.40 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 5.75 Total: -2.47 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -3.89 Total: -85.34 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -0.25 Total: -47.44 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Atomic # 17 Polarization: -3.09 SS G_CDS: -0.08 Total: -3.17 kcal Total: -71.75 3.20 -68.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455705231.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.506 kcal (2) G-P(sol) polarization free energy of solvation -71.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds