Wall clock time and date at job start Sat Apr 11 2020 05:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34238 * 116.99552 * 2 1 4 4 O 1.20816 * 120.00105 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99632 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46833 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.47072 * 55.00389 * 6 5 3 8 8 C 1.53001 * 109.47132 * 175.00181 * 6 5 3 9 9 N 1.46503 * 109.47330 * 295.00125 * 6 5 3 10 10 C 1.34778 * 119.99971 * 154.99668 * 9 6 5 11 11 O 1.21584 * 120.00101 * 359.73178 * 10 9 6 12 12 N 1.34773 * 120.00134 * 180.02562 * 10 9 6 13 13 C 1.39276 * 120.00086 * 175.75885 * 12 10 9 14 14 C 1.39467 * 119.83741 * 34.71595 * 13 12 10 15 15 C 1.36377 * 120.17817 * 179.75821 * 14 13 12 16 16 C 1.40887 * 119.84501 * 0.53595 * 15 14 13 17 17 C 1.41153 * 120.15480 * 179.74073 * 16 15 14 18 18 H 1.08009 * 120.00093 * 34.75063 * 17 16 15 19 19 C 1.39888 * 120.00260 * 214.74628 * 17 16 15 20 20 N 1.30885 * 119.99661 * 355.60509 * 19 17 16 21 21 Si 1.86803 * 120.00218 * 175.59570 * 19 17 16 22 22 H 1.48491 * 109.47251 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46950 * 120.00431 * 21 19 17 24 24 H 1.48496 * 109.47088 * 240.00202 * 21 19 17 25 25 C 1.40839 * 119.68678 * 359.71437 * 16 15 14 26 26 C 1.36472 * 119.82156 * 0.02562 * 25 16 15 27 27 Cl 1.73597 * 119.93183 * 179.97438 * 26 25 16 28 28 H 1.09004 * 109.46811 * 60.00695 * 1 2 3 29 29 H 1.08999 * 109.46667 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47570 * 299.99809 * 1 2 3 31 31 H 1.09005 * 109.47195 * 60.00812 * 5 3 2 32 32 H 1.09000 * 109.47886 * 300.00232 * 5 3 2 33 33 H 1.08998 * 109.47336 * 179.97438 * 8 6 5 34 34 H 1.08993 * 109.47320 * 300.00417 * 8 6 5 35 35 H 1.09008 * 109.46665 * 60.00386 * 8 6 5 36 36 H 0.96991 * 120.00140 * 335.00627 * 9 6 5 37 37 H 0.96999 * 119.99842 * 355.75879 * 12 10 9 38 38 H 1.08001 * 119.91026 * 359.97438 * 14 13 12 39 39 H 1.07994 * 120.07534 * 180.25522 * 15 14 13 40 40 H 0.97004 * 119.99821 * 179.97438 * 20 19 17 41 41 H 1.08002 * 120.08758 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 6 3.9999 2.7423 -0.0002 7 1 3.5374 3.2583 0.8411 8 6 5.5225 2.8241 0.1261 9 7 3.5791 3.3753 -1.2526 10 6 3.3822 4.7077 -1.3012 11 8 3.5490 5.3837 -0.3045 12 7 2.9945 5.2900 -2.4532 13 6 2.7056 6.6522 -2.4821 14 6 3.4307 7.5325 -1.6795 15 6 3.1569 8.8683 -1.7061 16 6 2.1310 9.3573 -2.5386 17 6 1.8384 10.7379 -2.5671 18 1 2.6333 11.4608 -2.4566 19 6 0.5190 11.1700 -2.7386 20 7 -0.4318 10.2978 -2.9585 21 14 0.1142 12.9916 -2.6533 22 1 1.3565 13.7633 -2.3964 23 1 -0.4810 13.4272 -3.9422 24 1 -0.8549 13.2324 -1.5542 25 6 1.3990 8.4622 -3.3427 26 6 1.6876 7.1287 -3.3098 27 17 0.7868 6.0228 -4.2992 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 3.9563 0.7808 -0.8892 32 1 3.9557 0.7811 0.8908 33 1 5.8316 3.8693 0.1251 34 1 5.8357 2.3531 1.0578 35 1 5.9851 2.3080 -0.7153 36 1 3.4421 2.8355 -2.0467 37 1 2.9167 4.7604 -3.2621 38 1 4.2135 7.1559 -1.0378 39 1 3.7222 9.5490 -1.0869 40 1 -1.3468 10.5973 -3.0770 41 1 0.6114 8.8301 -3.9837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455709954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:03 Heat of formation + Delta-G solvation = -102.771781 kcal Electronic energy + Delta-G solvation = -26864.341486 eV Core-core repulsion = 22770.132590 eV Total energy + Delta-G solvation = -4094.208896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.77388 -39.84003 -37.84960 -36.83957 -35.68573 -35.44093 -34.25185 -33.03226 -31.50337 -29.38748 -29.24205 -28.61603 -27.20149 -25.06354 -22.71983 -21.71258 -21.04462 -20.50627 -20.17184 -18.11085 -17.77793 -17.36766 -17.03866 -16.70412 -16.41692 -15.56517 -15.23051 -14.83195 -14.25602 -14.15658 -13.90963 -13.69771 -13.50136 -13.24143 -12.87875 -12.65692 -12.40917 -12.37385 -12.26972 -12.23995 -12.03284 -11.59412 -11.37944 -11.21057 -11.06821 -10.99842 -10.89821 -10.60519 -10.51572 -10.25520 -9.96927 -9.68834 -9.49337 -9.23617 -8.94478 -8.85958 -7.46991 -6.90505 -6.64905 -4.39346 2.04565 2.46377 2.52929 2.91175 3.00728 3.09150 3.12618 3.15838 3.27887 3.77306 3.96686 4.31157 4.53129 4.61191 4.65146 4.83653 4.88787 4.97839 5.06542 5.22834 5.30106 5.34208 5.51517 5.55693 5.88602 6.10808 6.19581 6.27283 6.56904 6.64742 6.75784 6.93387 7.06806 7.17136 7.31771 7.42529 7.58082 7.76328 7.78720 7.99928 8.18161 8.47544 8.50731 8.82822 8.86955 9.12989 10.25653 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016279 B = 0.002793 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.567024 B =10022.030532 C =10709.547769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.448 3.552 4 O -0.481 6.481 5 C -0.121 4.121 6 C 0.173 3.827 7 H 0.098 0.902 8 C -0.163 4.163 9 N -0.742 5.742 10 C 0.706 3.294 11 O -0.576 6.576 12 N -0.666 5.666 13 C 0.037 3.963 14 C -0.076 4.076 15 C -0.200 4.200 16 C 0.105 3.895 17 C -0.457 4.457 18 H 0.080 0.920 19 C 0.068 3.932 20 N -0.806 5.806 21 Si 0.917 3.083 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.135 4.135 26 C -0.025 4.025 27 Cl -0.122 7.122 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.389 0.611 37 H 0.393 0.607 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.279 0.721 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.608 -19.337 2.124 20.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.289 3.711 4 O -0.366 6.366 5 C -0.159 4.159 6 C 0.067 3.933 7 H 0.116 0.884 8 C -0.221 4.221 9 N -0.397 5.397 10 C 0.407 3.593 11 O -0.453 6.453 12 N -0.313 5.313 13 C -0.057 4.057 14 C -0.097 4.097 15 C -0.220 4.220 16 C 0.102 3.898 17 C -0.487 4.487 18 H 0.098 0.902 19 C -0.147 4.147 20 N -0.433 5.433 21 Si 0.742 3.258 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.156 4.156 26 C -0.053 4.053 27 Cl -0.093 7.093 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.222 0.778 37 H 0.227 0.773 38 H 0.137 0.863 39 H 0.120 0.880 40 H 0.090 0.910 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.177 -18.522 2.945 19.456 hybrid contribution -0.912 0.035 -0.779 1.200 sum 4.264 -18.486 2.166 19.095 Atomic orbital electron populations 1.23249 0.76241 1.03478 1.02829 1.86480 1.23539 1.33741 1.84569 1.23768 0.92223 0.81551 0.73519 1.90820 1.66795 1.35912 1.43031 1.21802 0.88108 0.99317 1.06695 1.20529 0.94814 0.89434 0.88539 0.88363 1.22206 0.94456 1.03684 1.01786 1.45008 1.75347 1.06517 1.12872 1.15819 0.78286 0.81456 0.83723 1.90884 1.57996 1.62109 1.34347 1.42013 1.70789 1.08666 1.09786 1.16713 1.00793 0.81133 1.07049 1.20411 0.98615 0.92455 0.98188 1.20898 1.04174 0.93968 1.02941 1.17596 0.90089 0.93603 0.88511 1.19505 0.93405 0.92053 1.43760 0.90164 1.25916 0.96257 1.00070 0.92488 1.69759 1.01914 1.35435 1.36168 0.86110 0.79280 0.81924 0.78474 1.18524 1.19956 1.19940 1.21179 1.03413 0.89091 1.01876 1.20417 0.94956 0.91099 0.98848 1.98243 1.75485 1.64954 1.70665 0.91801 0.88230 0.91857 0.87239 0.86180 0.91006 0.91563 0.92367 0.77832 0.77323 0.86252 0.87951 0.90951 0.83889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.37 -3.55 10.57 -39.28 -0.42 -3.97 16 3 C 0.45 4.94 7.82 36.01 0.28 5.22 16 4 O -0.48 -7.52 15.10 -18.74 -0.28 -7.81 16 5 C -0.12 -0.90 5.35 -27.88 -0.15 -1.04 16 6 C 0.17 1.89 2.14 -67.93 -0.15 1.75 16 7 H 0.10 1.40 7.38 -51.93 -0.38 1.02 16 8 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 9 N -0.74 -9.79 4.23 -58.67 -0.25 -10.03 16 10 C 0.71 13.09 8.36 -86.92 -0.73 12.36 16 11 O -0.58 -12.91 13.39 5.29 0.07 -12.84 16 12 N -0.67 -12.60 5.02 -14.07 -0.07 -12.67 16 13 C 0.04 0.86 6.32 -83.52 -0.53 0.33 16 14 C -0.08 -1.83 8.61 -39.79 -0.34 -2.17 16 15 C -0.20 -4.98 9.74 -39.25 -0.38 -5.36 16 16 C 0.11 2.79 5.55 -106.81 -0.59 2.20 16 17 C -0.46 -12.00 9.02 -37.86 -0.34 -12.35 16 18 H 0.08 2.01 7.85 -52.48 -0.41 1.60 16 19 C 0.07 1.72 5.42 -17.34 -0.09 1.63 16 20 N -0.81 -21.05 10.60 55.54 0.59 -20.46 16 21 Si 0.92 18.94 29.56 -169.99 -5.03 13.92 16 22 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 C -0.13 -3.51 8.38 -39.24 -0.33 -3.84 16 26 C -0.02 -0.59 6.30 -39.72 -0.25 -0.84 16 27 Cl -0.12 -2.45 27.92 -51.86 -1.45 -3.90 16 28 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 36 H 0.39 4.07 8.62 -40.82 -0.35 3.72 16 37 H 0.39 6.32 8.07 -40.82 -0.33 5.99 16 38 H 0.12 2.81 6.18 -52.49 -0.32 2.48 16 39 H 0.10 2.39 8.06 -52.49 -0.42 1.96 16 40 H 0.28 6.69 8.30 -40.82 -0.34 6.36 16 41 H 0.14 3.88 6.13 -52.49 -0.32 3.56 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -33.07 366.46 -8.55 -41.62 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -5.06 Total: 12.48 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.18 Total: -1.86 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.27 Total: -43.17 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.63 Total: -24.61 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.92 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -1.45 Total: -3.90 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.07 -8.55 -41.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455709954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.151 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds