Wall clock time and date at job start Sat Apr 11 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00103 * 2 1 4 4 H 1.09001 * 110.64114 * 26.85405 * 3 2 1 5 5 C 1.54339 * 110.84971 * 263.69024 * 3 2 1 6 6 N 1.47026 * 107.26501 * 219.67333 * 5 3 2 7 7 C 1.34777 * 125.64531 * 178.84996 * 6 5 3 8 8 O 1.21584 * 119.99914 * 359.71842 * 7 6 5 9 9 N 1.34772 * 119.99779 * 179.44011 * 7 6 5 10 10 C 1.39276 * 119.99864 * 175.58233 * 9 7 6 11 11 C 1.39464 * 119.83748 * 34.43382 * 10 9 7 12 12 C 1.36377 * 120.17595 * 179.75955 * 11 10 9 13 13 C 1.40894 * 119.84886 * 0.53239 * 12 11 10 14 14 C 1.41155 * 120.15651 * 179.74345 * 13 12 11 15 15 H 1.07997 * 119.99943 * 148.70515 * 14 13 12 16 16 C 1.39887 * 119.99831 * 328.70312 * 14 13 12 17 17 N 1.30886 * 119.99880 * 167.70619 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 347.70438 * 16 14 13 19 19 H 1.48497 * 109.47207 * 92.58375 * 18 16 14 20 20 H 1.48494 * 109.47257 * 212.58593 * 18 16 14 21 21 H 1.48504 * 109.46899 * 332.58391 * 18 16 14 22 22 C 1.40834 * 119.68213 * 359.72290 * 13 12 11 23 23 C 1.36470 * 119.81998 * 359.97438 * 22 13 12 24 24 Cl 1.73606 * 119.92559 * 180.02562 * 23 22 13 25 25 C 1.47425 * 108.70305 * 358.58564 * 6 5 3 26 26 C 1.54910 * 104.83336 * 24.35753 * 25 6 5 27 27 H 1.08998 * 111.00878 * 81.05847 * 26 25 6 28 28 O 1.42899 * 111.00695 * 204.91684 * 26 25 6 29 29 H 1.08992 * 109.46919 * 300.00314 * 1 2 3 30 30 H 1.09001 * 109.46745 * 59.99925 * 1 2 3 31 31 H 1.09000 * 109.47368 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.98915 * 100.19970 * 5 3 2 33 33 H 1.09004 * 109.77793 * 339.03122 * 5 3 2 34 34 H 0.97005 * 119.99977 * 355.59054 * 9 7 6 35 35 H 1.07989 * 119.91110 * 0.02562 * 11 10 9 36 36 H 1.08001 * 120.07374 * 180.23091 * 12 11 10 37 37 H 0.96996 * 120.00064 * 179.97438 * 17 16 14 38 38 H 1.08005 * 120.09172 * 180.02562 * 22 13 12 39 39 H 1.09001 * 110.36534 * 143.19215 * 25 6 5 40 40 H 1.08994 * 110.36361 * 265.40668 * 25 6 5 41 41 H 0.96701 * 113.99916 * 298.54651 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3785 1.7428 -1.4336 6 7 3.6687 2.4438 -1.3581 7 6 4.3434 2.9619 -2.4035 8 8 3.8912 2.8636 -3.5278 9 7 5.5165 3.5939 -2.2018 10 6 6.2587 4.0483 -3.2892 11 6 5.6047 4.5221 -4.4263 12 6 6.3246 4.9732 -5.4931 13 6 7.7327 4.9494 -5.4495 14 6 8.4842 5.4097 -6.5521 15 1 9.4499 5.8667 -6.3944 16 6 7.9780 5.2738 -7.8491 17 7 8.5481 5.9057 -8.8436 18 14 6.4887 4.1906 -8.1619 19 1 5.2546 5.0136 -8.0925 20 1 6.5982 3.5753 -9.5089 21 1 6.4293 3.1216 -7.1328 22 6 8.3867 4.4647 -4.3002 23 6 7.6533 4.0223 -3.2378 24 17 8.4567 3.4248 -1.8195 25 6 4.0989 2.4917 0.0512 26 6 3.3817 1.2957 0.7256 27 1 3.9158 0.3640 0.5390 28 8 3.2208 1.5194 2.1278 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6145 2.4137 -1.8263 33 1 2.4700 0.8659 -2.0747 34 1 5.8440 3.7323 -1.2992 35 1 4.5255 4.5358 -4.4603 36 1 5.8165 5.3432 -6.3714 37 1 8.1974 5.8112 -9.7430 38 1 9.4658 4.4439 -4.2595 39 1 5.1803 2.3744 0.1218 40 1 3.7890 3.4302 0.5106 41 1 4.0541 1.6186 2.6084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455724583.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:10 Heat of formation + Delta-G solvation = -113.218145 kcal Electronic energy + Delta-G solvation = -27059.174470 eV Core-core repulsion = 22964.512585 eV Total energy + Delta-G solvation = -4094.661885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.87346 -40.42970 -39.35124 -37.85371 -37.41298 -36.59525 -36.18054 -35.00297 -32.06027 -31.63663 -30.69861 -29.49700 -27.62834 -26.67696 -24.55721 -23.75903 -22.95163 -22.17420 -21.04707 -19.78787 -19.45017 -18.90995 -18.40969 -17.56367 -17.20952 -16.83080 -16.58260 -16.26461 -16.15426 -15.90768 -15.78351 -15.40371 -14.96973 -14.71420 -14.45416 -14.39085 -14.20210 -13.94544 -13.84850 -13.70647 -13.37570 -13.04665 -12.88827 -12.64733 -12.41753 -12.36935 -12.21961 -11.87408 -11.78104 -11.71301 -11.49776 -11.21462 -11.05717 -10.87639 -10.72222 -9.89822 -9.59276 -9.01128 -8.93912 -6.51718 0.43986 0.63226 1.18319 1.24371 1.34214 1.36376 1.45888 1.95512 2.07916 2.49677 2.56375 2.74883 3.14290 3.31669 3.34473 3.65305 3.90263 4.08415 4.10556 4.23994 4.35377 4.42211 4.43228 4.53672 4.62258 4.64727 4.71116 4.72439 4.78882 4.86058 4.88130 5.05020 5.12511 5.33179 5.41313 5.67225 5.78907 5.86347 6.00866 6.09191 6.25827 6.55376 6.72838 6.76717 6.79965 7.41218 8.13019 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016732 B = 0.003055 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.017613 B = 9164.293578 C =10562.265222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.391 6.391 3 C 0.090 3.910 4 H 0.103 0.897 5 C 0.109 3.891 6 N -0.628 5.628 7 C 0.716 3.284 8 O -0.614 6.614 9 N -0.653 5.653 10 C 0.044 3.956 11 C -0.066 4.066 12 C -0.232 4.232 13 C 0.078 3.922 14 C -0.464 4.464 15 H 0.071 0.929 16 C 0.055 3.945 17 N -0.841 5.841 18 Si 0.956 3.044 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.189 4.189 23 C -0.003 4.003 24 Cl -0.071 7.071 25 C 0.066 3.934 26 C 0.107 3.893 27 H 0.085 0.915 28 O -0.559 6.559 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.413 0.587 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.296 0.704 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.177 -8.695 21.354 26.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.309 6.309 3 C 0.031 3.969 4 H 0.120 0.880 5 C -0.015 4.015 6 N -0.368 5.368 7 C 0.418 3.582 8 O -0.494 6.494 9 N -0.302 5.302 10 C -0.052 4.052 11 C -0.086 4.086 12 C -0.251 4.251 13 C 0.075 3.925 14 C -0.494 4.494 15 H 0.089 0.911 16 C -0.161 4.161 17 N -0.467 5.467 18 Si 0.782 3.218 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.184 1.184 22 C -0.210 4.210 23 C -0.032 4.032 24 Cl -0.042 7.042 25 C -0.056 4.056 26 C 0.047 3.953 27 H 0.102 0.898 28 O -0.368 6.368 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.251 0.749 35 H 0.142 0.858 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.143 0.857 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -12.861 -8.948 20.241 25.596 hybrid contribution 0.358 0.151 -0.196 0.435 sum -12.503 -8.797 20.045 25.209 Atomic orbital electron populations 1.23064 0.78893 1.04275 1.01111 1.87915 1.22015 1.26315 1.94654 1.23021 0.95417 0.86293 0.92170 0.87954 1.22275 0.84296 0.96745 0.98169 1.47140 1.23272 1.60026 1.06366 1.15511 0.80749 0.78468 0.83426 1.90902 1.69700 1.65691 1.23060 1.41793 1.20622 1.59063 1.08723 1.16634 0.87671 1.09864 0.91012 1.20571 0.99622 0.95812 0.92619 1.20890 0.94206 1.10298 0.99735 1.17755 0.91688 0.89944 0.93120 1.19412 1.04935 1.34587 0.90442 0.91077 1.26630 0.99184 0.94774 0.95504 1.69675 1.40039 1.34640 1.02368 0.85634 0.78496 0.80135 0.77563 1.18769 1.20276 1.18438 1.20687 0.99374 1.07104 0.93824 1.20245 0.90109 1.03427 0.89446 1.98274 1.79593 1.87036 1.39282 1.23257 1.01553 1.00747 0.80070 1.22765 0.94378 0.96455 0.81726 0.89765 1.86483 1.37584 1.95110 1.17576 0.92523 0.93154 0.88134 0.90638 0.91675 0.74933 0.85808 0.87876 0.89364 0.85717 0.88427 0.88421 0.74345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.85 113.37 1.23 1.50 16 2 O -0.39 -7.13 10.44 -148.98 -1.55 -8.68 16 3 C 0.09 1.48 3.17 31.79 0.10 1.58 16 4 H 0.10 1.42 7.82 -2.39 -0.02 1.41 16 5 C 0.11 2.35 6.65 86.73 0.58 2.92 16 6 N -0.63 -14.98 3.33 -829.72 -2.76 -17.74 16 7 C 0.72 23.86 8.33 179.06 1.49 25.36 16 8 O -0.61 -26.12 14.02 -3.98 -0.06 -26.18 16 9 N -0.65 -20.75 4.97 -316.70 -1.57 -22.32 16 10 C 0.04 1.74 6.32 38.58 0.24 1.98 16 11 C -0.07 -2.97 8.62 22.13 0.19 -2.78 16 12 C -0.23 -11.25 6.94 22.49 0.16 -11.10 16 13 C 0.08 3.92 5.13 -21.28 -0.11 3.81 16 14 C -0.46 -25.20 9.59 23.39 0.22 -24.98 16 15 H 0.07 4.06 8.06 -2.91 -0.02 4.04 16 16 C 0.05 2.91 5.47 85.23 0.47 3.37 16 17 N -0.84 -45.28 13.93 21.82 0.30 -44.97 16 18 Si 0.96 44.21 24.40 68.60 1.67 45.88 16 19 H -0.26 -11.68 6.66 99.48 0.66 -11.02 16 20 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.26 -12.74 6.68 99.48 0.66 -12.07 16 22 C -0.19 -8.41 9.50 22.49 0.21 -8.19 16 23 C 0.00 -0.13 6.30 22.18 0.14 0.01 16 24 Cl -0.07 -2.11 27.91 -2.72 -0.08 -2.19 16 25 C 0.07 0.96 6.26 86.86 0.54 1.50 16 26 C 0.11 1.49 4.16 31.99 0.13 1.62 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 O -0.56 -6.35 13.47 -148.98 -2.01 -8.36 16 29 H 0.06 0.55 8.11 -2.39 -0.02 0.53 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.63 8.06 -2.38 -0.02 1.61 16 34 H 0.41 10.17 6.58 -92.70 -0.61 9.56 16 35 H 0.12 5.62 6.14 -2.92 -0.02 5.60 16 36 H 0.10 5.05 4.41 -2.91 -0.01 5.04 16 37 H 0.30 14.37 8.30 -92.71 -0.77 13.60 16 38 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 39 H 0.10 1.15 7.38 -2.39 -0.02 1.13 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.40 0.92 9.11 -74.06 -0.67 0.24 16 Total: -1.00 -68.17 352.93 -0.72 -68.89 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -0.27 Total: 19.06 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 5.60 Total: -3.39 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -4.03 Total: -85.04 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -3.62 Total: -43.22 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.67 Total: 45.88 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -0.08 Total: -2.19 kcal Total: -68.17 -0.72 -68.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455724583.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.326 kcal (2) G-P(sol) polarization free energy of solvation -68.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds