Wall clock time and date at job start Sat Apr 11 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99513 * 2 1 4 4 C 1.53007 * 109.46524 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47145 * 65.00220 * 4 3 2 6 6 C 1.37103 * 119.99686 * 264.46632 * 5 4 3 7 7 H 1.08003 * 119.99868 * 138.26363 * 6 5 4 8 8 C 1.38952 * 119.99745 * 318.26699 * 6 5 4 9 9 N 1.31407 * 120.00162 * 341.89324 * 8 6 5 10 10 Si 1.86800 * 119.99638 * 161.89178 * 8 6 5 11 11 H 1.48500 * 109.47117 * 60.00071 * 10 8 6 12 12 H 1.48494 * 109.47130 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47420 * 300.00114 * 10 8 6 14 14 C 1.34772 * 120.00292 * 84.46761 * 5 4 3 15 15 O 1.21291 * 120.00114 * 359.97438 * 14 5 4 16 16 C 1.50697 * 119.99829 * 179.97438 * 14 5 4 17 17 N 1.46501 * 109.47035 * 179.97438 * 16 14 5 18 18 C 1.34780 * 120.00063 * 180.02562 * 17 16 14 19 19 O 1.21550 * 119.99978 * 359.97438 * 18 17 16 20 20 C 1.47851 * 119.99962 * 180.02562 * 18 17 16 21 21 C 1.39600 * 120.13821 * 359.97438 * 20 18 17 22 22 C 1.37937 * 119.87748 * 180.02562 * 21 20 18 23 23 C 1.38356 * 120.16121 * 359.97266 * 22 21 20 24 24 C 1.38454 * 120.28318 * 0.05063 * 23 22 21 25 25 Cl 1.73601 * 119.94147 * 179.97438 * 24 23 22 26 26 C 1.38097 * 120.11430 * 359.94831 * 24 23 22 27 27 H 1.09000 * 109.47104 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47617 * 300.00584 * 1 2 3 29 29 H 1.09007 * 109.46674 * 60.00690 * 1 2 3 30 30 H 1.08995 * 109.47765 * 60.00036 * 3 2 1 31 31 H 1.08999 * 109.47484 * 299.98867 * 3 2 1 32 32 H 1.09000 * 109.47265 * 304.99931 * 4 3 2 33 33 H 1.09006 * 109.46775 * 184.99914 * 4 3 2 34 34 H 0.96998 * 119.99759 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.46908 * 60.00551 * 16 14 5 36 36 H 1.08999 * 109.47735 * 299.99895 * 16 14 5 37 37 H 0.97000 * 120.00479 * 0.02562 * 17 16 14 38 38 H 1.08000 * 120.05602 * 0.02562 * 21 20 18 39 39 H 1.08005 * 119.91819 * 179.97438 * 22 21 20 40 40 H 1.08009 * 119.86120 * 180.02562 * 23 22 21 41 41 H 1.07993 * 120.08179 * 180.29365 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2072 -0.7866 -1.3022 7 1 3.8793 -1.3582 -2.1579 8 6 4.8625 -1.4198 -0.2533 9 7 5.5676 -0.7146 0.6024 10 14 4.7412 -3.2738 -0.0597 11 1 5.2844 -3.9349 -1.2734 12 1 5.5245 -3.6998 1.1278 13 1 3.3188 -3.6608 0.1201 14 6 4.1560 1.3205 -2.3517 15 8 3.9517 2.5152 -2.3064 16 6 4.6104 0.6821 -3.6389 17 7 4.7289 1.7082 -4.6778 18 6 5.1228 1.3666 -5.9206 19 8 5.3803 0.2073 -6.1794 20 6 5.2429 2.4023 -6.9689 21 6 4.9484 3.7348 -6.6747 22 6 5.0617 4.6966 -7.6569 23 6 5.4668 4.3438 -8.9319 24 6 5.7601 3.0242 -9.2311 25 17 6.2670 2.5912 -10.8341 26 6 5.6506 2.0519 -8.2566 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.8508 0.5685 0.8427 33 1 3.9784 2.1766 0.0902 34 1 6.0253 -1.1567 1.3344 35 1 3.8820 -0.0669 -3.9499 36 1 5.5789 0.2057 -3.4862 37 1 4.5238 2.6335 -4.4712 38 1 4.6325 4.0120 -5.6798 39 1 4.8337 5.7277 -7.4301 40 1 5.5543 5.1009 -9.6972 41 1 5.8840 1.0235 -8.4893 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457184146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:14 Heat of formation + Delta-G solvation = -89.161490 kcal Electronic energy + Delta-G solvation = -26658.106532 eV Core-core repulsion = 22564.487822 eV Total energy + Delta-G solvation = -4093.618710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.22269 -38.97635 -38.19359 -37.03550 -36.62726 -34.97145 -34.00348 -31.69496 -31.54083 -31.01601 -29.64630 -27.09641 -25.82060 -24.73983 -23.79604 -22.79408 -21.87094 -20.28217 -19.36074 -18.52014 -17.01861 -16.52458 -15.97888 -15.86350 -15.61214 -15.34623 -15.28616 -15.12135 -14.79484 -14.41673 -14.30103 -14.10032 -13.99354 -13.83489 -13.42386 -13.18646 -12.41711 -12.16350 -12.10122 -12.04996 -11.70443 -11.67516 -11.43812 -11.21667 -11.18858 -11.11868 -11.04932 -10.73623 -10.40536 -10.14297 -9.83486 -9.31097 -9.22938 -9.04661 -9.03811 -8.71092 -8.65801 -7.59128 -6.41997 -4.14918 0.57665 0.93980 1.84101 2.80616 3.17173 3.24497 3.28344 3.33529 3.66268 3.72128 4.12780 4.43034 4.53937 4.54747 4.67643 4.86999 4.88815 4.98653 5.08639 5.31083 5.57187 5.60171 5.66357 5.79887 5.89282 5.92582 5.99523 6.00229 6.03322 6.12187 6.15315 6.24721 6.33328 6.41560 6.56695 6.70433 7.13943 7.41903 7.71930 7.79305 7.91143 8.27611 8.41173 9.01287 9.33048 9.76212 10.62008 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.002536 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.899258 B =11039.874815 C =11988.437509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.051 3.949 4 C 0.121 3.879 5 N -0.416 5.416 6 C -0.337 4.337 7 H 0.089 0.911 8 C 0.055 3.945 9 N -0.861 5.861 10 Si 0.917 3.083 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.270 1.270 14 C 0.462 3.538 15 O -0.614 6.614 16 C 0.120 3.880 17 N -0.704 5.704 18 C 0.553 3.447 19 O -0.538 6.538 20 C -0.112 4.112 21 C -0.081 4.081 22 C -0.114 4.114 23 C -0.091 4.091 24 C -0.045 4.045 25 Cl -0.068 7.068 26 C -0.054 4.054 27 H 0.078 0.922 28 H 0.030 0.970 29 H 0.032 0.968 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.271 0.729 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.407 0.593 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 8.597 -11.825 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.026 4.026 4 C -0.003 4.003 5 N -0.132 5.132 6 C -0.465 4.465 7 H 0.106 0.894 8 C -0.152 4.152 9 N -0.497 5.497 10 Si 0.743 3.257 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.195 1.195 14 C 0.250 3.750 15 O -0.502 6.502 16 C -0.006 4.006 17 N -0.357 5.357 18 C 0.339 3.661 19 O -0.417 6.417 20 C -0.116 4.116 21 C -0.100 4.100 22 C -0.132 4.132 23 C -0.110 4.110 24 C -0.072 4.072 25 Cl -0.039 7.039 26 C -0.073 4.073 27 H 0.096 0.904 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.126 0.874 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.246 0.754 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.154 0.846 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.694 8.075 -11.851 14.592 hybrid contribution -0.373 -0.346 0.259 0.571 sum -3.068 7.730 -11.592 14.266 Atomic orbital electron populations 1.22650 0.83290 1.01826 0.98856 1.88137 1.17491 1.27651 1.95053 1.23033 0.96377 0.84419 0.98807 1.21407 0.89222 0.98996 0.90674 1.43185 1.55318 1.07408 1.07317 1.19295 1.37432 0.81901 1.07846 0.89350 1.25352 0.93306 1.00150 0.96424 1.69906 1.27068 1.37026 1.15697 0.86165 0.78736 0.82817 0.77998 1.19628 1.21029 1.19493 1.20255 0.81662 0.86348 0.86704 1.90486 1.58684 1.15231 1.85803 1.20932 1.03817 0.89889 0.85973 1.45746 1.67354 1.13184 1.09456 1.18048 0.77918 0.87966 0.82206 1.90786 1.50145 1.19382 1.81340 1.19982 1.03432 0.93962 0.94192 1.21588 0.96283 0.91851 1.00243 1.21090 0.99823 1.00138 0.92135 1.21247 0.97793 0.94362 0.97596 1.20803 1.04656 0.94616 0.87108 1.98377 1.89581 1.93446 1.22473 1.21163 0.95467 1.00153 0.90547 0.90358 0.95114 0.94969 0.94157 0.93962 0.87422 0.90996 0.91884 0.89417 0.88366 0.75443 0.84392 0.84306 0.84585 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.48 10.44 -35.23 -0.37 -7.84 16 3 C 0.05 1.01 6.24 37.16 0.23 1.24 16 4 C 0.12 2.73 5.26 -4.04 -0.02 2.71 16 5 N -0.42 -9.97 2.45 -114.80 -0.28 -10.26 16 6 C -0.34 -8.36 8.29 -14.93 -0.12 -8.49 16 7 H 0.09 2.15 7.21 -52.48 -0.38 1.77 16 8 C 0.05 1.36 4.95 -17.47 -0.09 1.27 16 9 N -0.86 -22.24 11.66 55.50 0.65 -21.59 16 10 Si 0.92 19.73 29.59 -169.99 -5.03 14.70 16 11 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 13 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 14 C 0.46 10.51 7.66 -10.99 -0.08 10.43 16 15 O -0.61 -14.34 15.34 5.55 0.09 -14.26 16 16 C 0.12 2.43 4.88 -5.19 -0.03 2.40 16 17 N -0.70 -12.27 5.48 -62.43 -0.34 -12.61 16 18 C 0.55 9.42 7.77 -12.33 -0.10 9.32 16 19 O -0.54 -10.84 16.35 5.32 0.09 -10.75 16 20 C -0.11 -1.52 5.87 -104.97 -0.62 -2.14 16 21 C -0.08 -0.89 9.54 -39.18 -0.37 -1.26 16 22 C -0.11 -1.00 10.03 -39.65 -0.40 -1.39 16 23 C -0.09 -0.81 9.82 -39.46 -0.39 -1.20 16 24 C -0.05 -0.49 6.31 -39.55 -0.25 -0.74 16 25 Cl -0.07 -0.68 28.95 -51.86 -1.50 -2.18 16 26 C -0.05 -0.68 9.38 -39.15 -0.37 -1.05 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.11 2.63 5.81 -51.93 -0.30 2.33 16 33 H 0.07 1.62 7.59 -51.93 -0.39 1.23 16 34 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 35 H 0.09 1.77 7.70 -51.93 -0.40 1.37 16 36 H 0.10 2.10 8.10 -51.93 -0.42 1.68 16 37 H 0.41 6.58 5.47 -40.82 -0.22 6.35 16 38 H 0.14 1.39 6.40 -52.49 -0.34 1.05 16 39 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 40 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 41 H 0.15 1.93 7.65 -52.49 -0.40 1.53 16 LS Contribution 369.68 15.07 5.57 5.57 Total: -1.00 -29.57 369.68 -7.57 -37.14 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -4.95 Total: 9.37 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: -1.48 Total: 12.70 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.02 Total: -44.46 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -0.20 Total: -32.85 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.70 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.57 -7.57 -37.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457184146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.019 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds