Wall clock time and date at job start Sat Apr 11 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42892 * 114.00495 * 2 1 4 4 C 1.53003 * 109.47407 * 179.97438 * 3 2 1 5 5 O 1.42906 * 113.27822 * 51.93886 * 4 3 2 6 6 C 1.53490 * 114.20717 * 184.99843 * 4 3 2 7 7 N 1.47068 * 87.98409 * 139.65974 * 6 4 3 8 8 C 1.34783 * 136.05859 * 152.84751 * 7 6 4 9 9 O 1.21576 * 119.99790 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99748 * 179.97438 * 8 7 6 11 11 C 1.39268 * 119.99582 * 184.19822 * 10 8 7 12 12 C 1.39467 * 119.84241 * 331.05183 * 11 10 8 13 13 C 1.36376 * 120.18030 * 180.32614 * 12 11 10 14 14 C 1.40885 * 119.84731 * 359.42698 * 13 12 11 15 15 C 1.41155 * 120.15770 * 180.25416 * 14 13 12 16 16 H 1.08002 * 119.99959 * 333.34743 * 15 14 13 17 17 C 1.39892 * 119.99875 * 153.34390 * 15 14 13 18 18 N 1.30874 * 120.00122 * 344.51482 * 17 15 14 19 19 Si 1.86803 * 119.99749 * 164.51083 * 17 15 14 20 20 H 1.48497 * 109.47231 * 60.00144 * 19 17 15 21 21 H 1.48494 * 109.47076 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47423 * 300.00096 * 19 17 15 23 23 C 1.40841 * 119.68726 * 0.27824 * 14 13 12 24 24 C 1.36479 * 119.81620 * 359.97438 * 23 14 13 25 25 Cl 1.73588 * 119.92823 * 179.97438 * 24 23 14 26 26 C 1.47064 * 87.88598 * 333.09983 * 7 6 4 27 27 H 1.08997 * 109.46840 * 300.00059 * 1 2 3 28 28 H 1.09001 * 109.46942 * 59.99351 * 1 2 3 29 29 H 1.09000 * 109.47622 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46850 * 60.00331 * 3 2 1 31 31 H 1.08997 * 109.47286 * 300.00100 * 3 2 1 32 32 H 0.96699 * 113.99713 * 313.05885 * 5 4 3 33 33 H 1.09007 * 113.47050 * 24.88008 * 6 4 3 34 34 H 1.08997 * 113.47173 * 254.43921 * 6 4 3 35 35 H 0.96990 * 119.99845 * 4.20084 * 10 8 7 36 36 H 1.08004 * 119.91146 * 0.05539 * 12 11 10 37 37 H 1.08004 * 120.07257 * 179.70177 * 13 12 11 38 38 H 0.97001 * 119.99696 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.09444 * 179.97438 * 23 14 13 40 40 H 1.09000 * 113.46854 * 141.67702 * 26 7 6 41 41 H 1.09002 * 113.47272 * 272.11949 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 8 4.0350 0.3329 -1.0326 6 6 4.2730 2.5250 0.1227 7 7 5.2237 1.8605 1.0269 8 6 6.5147 2.0318 1.3739 9 8 7.1629 2.9332 0.8785 10 7 7.0872 1.2037 2.2701 11 6 8.3937 1.4329 2.6944 12 6 9.2994 2.0644 1.8424 13 6 10.5823 2.2863 2.2484 14 6 10.9891 1.8869 3.5367 15 6 12.3138 2.1181 3.9656 16 1 13.1119 2.1865 3.2411 17 6 12.5930 2.2590 5.3292 18 7 11.6207 2.4801 6.1768 19 14 14.3537 2.1313 5.9400 20 1 15.1793 3.1833 5.2943 21 1 14.3811 2.3148 7.4133 22 1 14.9006 0.7936 5.5981 23 6 10.0678 1.2552 4.3945 24 6 8.7886 1.0350 3.9727 25 17 7.6509 0.2561 5.0273 26 6 4.1475 0.9228 1.3810 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6887 1.8462 0.8901 31 1 1.6887 1.8463 -0.8899 32 1 3.5683 -0.5108 -1.1068 33 1 3.6831 3.3025 0.6083 34 1 4.7238 2.8591 -0.8118 35 1 6.5892 0.4482 2.6194 36 1 8.9852 2.3746 0.8567 37 1 11.2836 2.7712 1.5854 38 1 11.8144 2.5781 7.1222 39 1 10.3727 0.9459 5.3834 40 1 4.4917 -0.1028 1.5142 41 1 3.5237 1.2690 2.2051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459602663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:26 Heat of formation + Delta-G solvation = -55.350664 kcal Electronic energy + Delta-G solvation = -26656.135047 eV Core-core repulsion = 22563.982484 eV Total energy + Delta-G solvation = -4092.152562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91313 -39.25142 -37.95520 -37.18314 -35.50267 -35.31876 -34.37463 -33.01655 -30.58586 -29.38292 -28.98437 -27.46070 -26.34133 -25.80785 -24.53751 -21.88912 -21.10691 -20.60971 -19.42394 -17.97965 -17.43761 -17.37898 -17.05040 -16.50278 -16.32586 -15.72097 -15.35520 -15.18313 -14.58955 -14.30353 -14.13970 -13.92379 -13.77766 -13.24044 -13.20466 -12.92438 -12.56558 -12.46890 -12.30277 -12.05003 -11.89039 -11.79055 -11.25840 -11.15618 -11.09253 -10.93119 -10.59737 -10.39662 -10.34654 -10.17075 -9.98270 -9.74240 -9.54536 -9.22607 -8.94334 -8.63133 -7.50127 -7.02172 -6.78230 -4.37483 2.48291 2.62261 2.89773 3.05757 3.07194 3.09671 3.13212 3.20595 3.52346 3.70530 3.90246 4.00050 4.22841 4.49035 4.55739 4.68598 4.85667 4.89297 4.96097 5.10813 5.18445 5.22385 5.28690 5.41239 5.54484 5.57319 5.67480 6.26239 6.53480 6.58803 6.74807 6.91077 7.08367 7.13302 7.36005 7.36793 7.37476 7.72575 7.78501 7.93557 8.14264 8.41497 8.45037 8.77993 8.79955 9.05325 10.13272 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.026991 B = 0.002407 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.132740 B =11628.096560 C =12321.153410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.047 3.953 4 C 0.100 3.900 5 O -0.524 6.524 6 C 0.142 3.858 7 N -0.661 5.661 8 C 0.734 3.266 9 O -0.572 6.572 10 N -0.658 5.658 11 C 0.023 3.977 12 C -0.077 4.077 13 C -0.209 4.209 14 C 0.110 3.890 15 C -0.453 4.453 16 H 0.082 0.918 17 C 0.073 3.927 18 N -0.790 5.790 19 Si 0.912 3.088 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.144 4.144 24 C -0.019 4.019 25 Cl -0.123 7.123 26 C 0.077 3.923 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.387 0.613 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.394 0.606 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.283 0.717 39 H 0.133 0.867 40 H 0.081 0.919 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.134 -4.661 -7.215 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C -0.031 4.031 4 C 0.057 3.943 5 O -0.331 6.331 6 C 0.018 3.982 7 N -0.401 5.401 8 C 0.438 3.562 9 O -0.449 6.449 10 N -0.303 5.303 11 C -0.071 4.071 12 C -0.097 4.097 13 C -0.229 4.229 14 C 0.107 3.893 15 C -0.482 4.482 16 H 0.100 0.900 17 C -0.146 4.146 18 N -0.415 5.415 19 Si 0.736 3.264 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.164 4.164 24 C -0.047 4.047 25 Cl -0.095 7.095 26 C -0.048 4.048 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.237 0.763 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.228 0.772 36 H 0.146 0.854 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.151 0.849 40 H 0.100 0.900 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.030 -3.636 -7.237 20.681 hybrid contribution -0.360 -0.656 0.959 1.216 sum -19.389 -4.292 -6.278 20.827 Atomic orbital electron populations 1.22776 0.80175 1.03115 1.00251 1.87783 1.20452 1.27339 1.95523 1.23010 0.92436 0.85688 1.01927 1.22378 0.89603 0.93664 0.88685 1.86525 1.61195 1.32315 1.53016 1.22732 0.87637 0.93070 0.94789 1.48305 1.07614 1.35822 1.48396 1.15142 0.78884 0.81881 0.80315 1.90868 1.60651 1.35354 1.58046 1.41909 1.14101 1.29435 1.44831 1.16683 0.83244 1.14213 0.93001 1.20647 0.92167 0.98118 0.98743 1.20803 0.95257 1.08064 0.98754 1.17548 0.93004 0.88231 0.90539 1.19504 0.93842 1.42729 0.92172 0.89970 1.25955 0.99531 0.92215 0.96851 1.69811 1.34019 1.33098 1.04558 0.86297 0.82126 0.80062 0.77876 1.18926 1.20305 1.18742 1.20844 0.90564 1.02978 1.02017 1.20267 0.91551 1.04204 0.88721 1.98240 1.62945 1.80866 1.67415 1.23604 0.88025 0.95864 0.97257 0.93764 0.93836 0.89318 0.91427 0.91645 0.76343 0.88648 0.89180 0.77159 0.85365 0.87973 0.90569 0.84906 0.90010 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.75 10.00 -45.01 -0.45 -3.20 16 3 C 0.05 0.30 5.62 37.16 0.21 0.51 16 4 C 0.10 0.92 1.79 -90.24 -0.16 0.76 16 5 O -0.52 -5.63 13.55 -45.01 -0.61 -6.24 16 6 C 0.14 1.58 8.05 -8.51 -0.07 1.51 16 7 N -0.66 -9.84 3.69 -191.17 -0.71 -10.55 16 8 C 0.73 14.60 8.66 -86.91 -0.75 13.85 16 9 O -0.57 -13.49 14.16 5.30 0.08 -13.41 16 10 N -0.66 -13.08 5.11 -14.07 -0.07 -13.15 16 11 C 0.02 0.53 6.42 -83.52 -0.54 -0.01 16 12 C -0.08 -1.88 8.67 -39.79 -0.35 -2.23 16 13 C -0.21 -5.26 9.74 -39.25 -0.38 -5.64 16 14 C 0.11 2.92 5.56 -106.80 -0.59 2.33 16 15 C -0.45 -11.81 9.04 -37.86 -0.34 -12.15 16 16 H 0.08 2.04 7.89 -52.49 -0.41 1.62 16 17 C 0.07 1.80 5.17 -17.34 -0.09 1.71 16 18 N -0.79 -20.23 10.95 55.54 0.61 -19.62 16 19 Si 0.91 18.44 29.59 -169.99 -5.03 13.41 16 20 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 23 C -0.14 -3.70 8.38 -39.23 -0.33 -4.03 16 24 C -0.02 -0.45 6.30 -39.71 -0.25 -0.70 16 25 Cl -0.12 -2.44 27.81 -51.86 -1.44 -3.88 16 26 C 0.08 0.81 7.70 -8.64 -0.07 0.74 16 27 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.34 8.00 -51.93 -0.42 -0.08 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.39 2.93 8.37 45.56 0.38 3.32 16 33 H 0.10 0.80 8.10 -51.92 -0.42 0.38 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.39 6.86 7.58 -40.82 -0.31 6.55 16 36 H 0.13 3.17 5.73 -52.48 -0.30 2.87 16 37 H 0.10 2.42 8.06 -52.48 -0.42 1.99 16 38 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 39 H 0.13 3.53 6.23 -52.49 -0.33 3.21 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 0.76 8.00 -51.93 -0.42 0.35 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -32.12 363.40 -9.06 -41.18 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -4.31 Total: 12.07 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -2.60 Total: -2.09 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.17 Total: -43.32 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.98 Total: -22.86 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -1.44 Total: -3.88 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.12 -9.06 -41.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459602663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.167 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds