Wall clock time and date at job start Sat Apr 11 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42892 * 114.00495 * 2 1 4 4 C 1.53003 * 109.47407 * 179.97438 * 3 2 1 5 5 O 1.42906 * 113.27822 * 51.93886 * 4 3 2 6 6 C 1.53490 * 114.20717 * 184.99843 * 4 3 2 7 7 N 1.47068 * 87.98409 * 139.65974 * 6 4 3 8 8 C 1.34783 * 136.05859 * 152.84751 * 7 6 4 9 9 O 1.21576 * 119.99790 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99748 * 179.97438 * 8 7 6 11 11 C 1.39268 * 119.99582 * 184.19822 * 10 8 7 12 12 C 1.39467 * 119.84241 * 331.05183 * 11 10 8 13 13 C 1.36376 * 120.18030 * 180.32614 * 12 11 10 14 14 C 1.40885 * 119.84731 * 359.42698 * 13 12 11 15 15 C 1.41155 * 120.15770 * 180.25416 * 14 13 12 16 16 H 1.08002 * 119.99959 * 333.34743 * 15 14 13 17 17 C 1.39892 * 119.99875 * 153.34390 * 15 14 13 18 18 N 1.30874 * 120.00122 * 344.51482 * 17 15 14 19 19 Si 1.86803 * 119.99749 * 164.51083 * 17 15 14 20 20 H 1.48497 * 109.47231 * 60.00144 * 19 17 15 21 21 H 1.48494 * 109.47076 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47423 * 300.00096 * 19 17 15 23 23 C 1.40841 * 119.68726 * 0.27824 * 14 13 12 24 24 C 1.36479 * 119.81620 * 359.97438 * 23 14 13 25 25 Cl 1.73588 * 119.92823 * 179.97438 * 24 23 14 26 26 C 1.47064 * 87.88598 * 333.09983 * 7 6 4 27 27 H 1.08997 * 109.46840 * 300.00059 * 1 2 3 28 28 H 1.09001 * 109.46942 * 59.99351 * 1 2 3 29 29 H 1.09000 * 109.47622 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46850 * 60.00331 * 3 2 1 31 31 H 1.08997 * 109.47286 * 300.00100 * 3 2 1 32 32 H 0.96699 * 113.99713 * 313.05885 * 5 4 3 33 33 H 1.09007 * 113.47050 * 24.88008 * 6 4 3 34 34 H 1.08997 * 113.47173 * 254.43921 * 6 4 3 35 35 H 0.96990 * 119.99845 * 4.20084 * 10 8 7 36 36 H 1.08004 * 119.91146 * 0.05539 * 12 11 10 37 37 H 1.08004 * 120.07257 * 179.70177 * 13 12 11 38 38 H 0.97001 * 119.99696 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.09444 * 179.97438 * 23 14 13 40 40 H 1.09000 * 113.46854 * 141.67702 * 26 7 6 41 41 H 1.09002 * 113.47272 * 272.11949 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 8 4.0350 0.3329 -1.0326 6 6 4.2730 2.5250 0.1227 7 7 5.2237 1.8605 1.0269 8 6 6.5147 2.0318 1.3739 9 8 7.1629 2.9332 0.8785 10 7 7.0872 1.2037 2.2701 11 6 8.3937 1.4329 2.6944 12 6 9.2994 2.0644 1.8424 13 6 10.5823 2.2863 2.2484 14 6 10.9891 1.8869 3.5367 15 6 12.3138 2.1181 3.9656 16 1 13.1119 2.1865 3.2411 17 6 12.5930 2.2590 5.3292 18 7 11.6207 2.4801 6.1768 19 14 14.3537 2.1313 5.9400 20 1 15.1793 3.1833 5.2943 21 1 14.3811 2.3148 7.4133 22 1 14.9006 0.7936 5.5981 23 6 10.0678 1.2552 4.3945 24 6 8.7886 1.0350 3.9727 25 17 7.6509 0.2561 5.0273 26 6 4.1475 0.9228 1.3810 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6887 1.8462 0.8901 31 1 1.6887 1.8463 -0.8899 32 1 3.5683 -0.5108 -1.1068 33 1 3.6831 3.3025 0.6083 34 1 4.7238 2.8591 -0.8118 35 1 6.5892 0.4482 2.6194 36 1 8.9852 2.3746 0.8567 37 1 11.2836 2.7712 1.5854 38 1 11.8144 2.5781 7.1222 39 1 10.3727 0.9459 5.3834 40 1 4.4917 -0.1028 1.5142 41 1 3.5237 1.2690 2.2051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459602663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:25 Heat of formation + Delta-G solvation = -78.207380 kcal Electronic energy + Delta-G solvation = -26657.126188 eV Core-core repulsion = 22563.982484 eV Total energy + Delta-G solvation = -4093.143704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01419 -40.65581 -39.16488 -38.27401 -37.26832 -36.27952 -36.09995 -34.81248 -31.73948 -31.29304 -30.50532 -28.30163 -27.22577 -26.84802 -25.85630 -23.66000 -22.71955 -21.85968 -20.75359 -19.53297 -19.06335 -18.35274 -18.05546 -17.44939 -17.18784 -16.99528 -16.76069 -16.45660 -16.00285 -15.57917 -15.45163 -15.03265 -14.70837 -14.68279 -14.59417 -14.25209 -14.16336 -13.95043 -13.60503 -13.09817 -13.04246 -12.88489 -12.85505 -12.68056 -12.34271 -12.29252 -12.03353 -11.94074 -11.73280 -11.59311 -11.33905 -11.13120 -10.92519 -10.73997 -10.59276 -9.84177 -9.41813 -8.87530 -8.62780 -6.33042 0.65632 0.94996 1.30807 1.39431 1.42128 1.51093 1.53863 2.08328 2.21910 2.58709 2.67883 2.78973 3.00381 3.24832 3.58217 3.88879 4.01800 4.27903 4.34179 4.41031 4.43998 4.51661 4.54946 4.61964 4.64526 4.71063 4.76331 4.81797 4.93060 4.96520 4.99286 5.23446 5.24842 5.43720 5.66044 5.83954 6.00763 6.13977 6.18227 6.23956 6.49908 6.74216 6.84871 6.86240 6.93314 7.51424 8.30423 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.026991 B = 0.002407 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.132740 B =11628.096560 C =12321.153410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.055 3.945 4 C 0.114 3.886 5 O -0.548 6.548 6 C 0.132 3.868 7 N -0.667 5.667 8 C 0.726 3.274 9 O -0.618 6.618 10 N -0.654 5.654 11 C 0.031 3.969 12 C -0.086 4.086 13 C -0.220 4.220 14 C 0.083 3.917 15 C -0.485 4.485 16 H 0.084 0.916 17 C 0.034 3.966 18 N -0.821 5.821 19 Si 0.986 3.014 20 H -0.260 1.260 21 H -0.268 1.268 22 H -0.258 1.258 23 C -0.159 4.159 24 C -0.024 4.024 25 Cl -0.087 7.087 26 C 0.074 3.926 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.400 0.600 33 H 0.130 0.870 34 H 0.073 0.927 35 H 0.407 0.593 36 H 0.125 0.875 37 H 0.107 0.893 38 H 0.291 0.709 39 H 0.122 0.878 40 H 0.082 0.918 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.189 -5.231 -6.655 23.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.022 4.022 4 C 0.071 3.929 5 O -0.357 6.357 6 C 0.009 3.991 7 N -0.406 5.406 8 C 0.430 3.570 9 O -0.499 6.499 10 N -0.300 5.300 11 C -0.064 4.064 12 C -0.106 4.106 13 C -0.241 4.241 14 C 0.080 3.920 15 C -0.514 4.514 16 H 0.102 0.898 17 C -0.182 4.182 18 N -0.446 5.446 19 Si 0.807 3.193 20 H -0.184 1.184 21 H -0.192 1.192 22 H -0.183 1.183 23 C -0.179 4.179 24 C -0.053 4.053 25 Cl -0.059 7.059 26 C -0.049 4.049 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.251 0.749 33 H 0.148 0.852 34 H 0.091 0.909 35 H 0.243 0.757 36 H 0.142 0.858 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.139 0.861 40 H 0.101 0.899 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.192 -4.246 -6.697 22.627 hybrid contribution 0.031 -0.526 0.715 0.888 sum -21.161 -4.773 -5.983 22.503 Atomic orbital electron populations 1.22931 0.78794 1.03928 1.01130 1.87750 1.21903 1.27595 1.95731 1.22921 0.89784 0.85898 1.03599 1.22240 0.91451 0.91858 0.87360 1.86492 1.62258 1.33352 1.53561 1.23148 0.87040 0.95065 0.93814 1.48385 1.06759 1.37166 1.48328 1.15323 0.80420 0.81335 0.79911 1.90823 1.62517 1.37070 1.59513 1.41756 1.13017 1.30131 1.45082 1.16725 0.84521 1.12575 0.92629 1.20709 0.92277 0.98684 0.98959 1.20938 0.95824 1.08497 0.98802 1.17864 0.93890 0.89064 0.91221 1.19763 0.93890 1.44377 0.93393 0.89830 1.26809 1.03940 0.91069 0.96359 1.69862 1.36219 1.33365 1.05153 0.85180 0.76411 0.80118 0.77612 1.18421 1.19203 1.18264 1.20778 0.91579 1.03964 1.01617 1.20271 0.91741 1.03953 0.89350 1.98235 1.61346 1.80043 1.66272 1.23978 0.86583 0.95157 0.99171 0.92790 0.93031 0.88674 0.89254 0.90471 0.74910 0.85235 0.90881 0.75722 0.85788 0.87484 0.89821 0.86060 0.89946 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.41 16 2 O -0.41 -4.51 10.00 -139.63 -1.40 -5.90 16 3 C 0.06 0.51 5.62 71.98 0.40 0.92 16 4 C 0.11 1.81 1.79 -10.55 -0.02 1.79 16 5 O -0.55 -10.98 13.55 -139.63 -1.89 -12.87 16 6 C 0.13 2.71 8.05 83.18 0.67 3.38 16 7 N -0.67 -19.05 3.69 -877.48 -3.24 -22.29 16 8 C 0.73 28.90 8.66 179.05 1.55 30.45 16 9 O -0.62 -29.85 14.16 -3.96 -0.06 -29.90 16 10 N -0.65 -25.83 5.11 -316.69 -1.62 -27.45 16 11 C 0.03 1.46 6.42 38.58 0.25 1.70 16 12 C -0.09 -4.36 8.67 22.13 0.19 -4.17 16 13 C -0.22 -11.58 9.74 22.48 0.22 -11.36 16 14 C 0.08 4.55 5.56 -21.28 -0.12 4.44 16 15 C -0.49 -26.00 9.04 23.39 0.21 -25.79 16 16 H 0.08 4.28 7.89 -2.91 -0.02 4.25 16 17 C 0.03 1.69 5.17 85.24 0.44 2.13 16 18 N -0.82 -42.58 10.95 21.82 0.24 -42.34 16 19 Si 0.99 37.76 29.59 68.60 2.03 39.79 16 20 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 21 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 22 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 23 C -0.16 -8.40 8.38 22.50 0.19 -8.22 16 24 C -0.02 -1.16 6.30 22.18 0.14 -1.02 16 25 Cl -0.09 -3.38 27.81 -2.72 -0.08 -3.46 16 26 C 0.07 1.35 7.70 83.09 0.64 1.99 16 27 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.09 0.47 8.00 -2.39 -0.02 0.45 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.40 5.44 8.37 -74.06 -0.62 4.82 16 33 H 0.13 1.77 8.10 -2.38 -0.02 1.75 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.41 13.71 7.58 -92.72 -0.70 13.01 16 36 H 0.12 6.39 5.73 -2.91 -0.02 6.37 16 37 H 0.11 5.31 8.06 -2.91 -0.02 5.29 16 38 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 39 H 0.12 6.63 6.23 -2.91 -0.02 6.61 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.12 1.55 8.00 -2.39 -0.02 1.53 16 Total: -1.00 -71.85 363.40 -0.22 -72.07 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: -0.23 Total: 34.69 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 6.01 Total: -2.34 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -4.62 Total: -92.09 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -3.34 Total: -48.68 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Atomic # 17 Polarization: -3.38 SS G_CDS: -0.08 Total: -3.46 kcal Total: -71.85 -0.22 -72.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459602663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.135 kcal (2) G-P(sol) polarization free energy of solvation -71.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds