Wall clock time and date at job start Sat Apr 11 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00046 * 2 1 4 4 H 1.09001 * 110.45592 * 29.29988 * 3 2 1 5 5 C 1.54473 * 110.51303 * 266.69471 * 3 2 1 6 6 O 1.44787 * 104.62893 * 217.27621 * 5 3 2 7 7 C 1.44419 * 105.29525 * 40.53686 * 6 5 3 8 8 C 1.54480 * 104.80435 * 319.45365 * 7 6 5 9 9 H 1.09005 * 110.51188 * 265.33608 * 8 7 6 10 10 N 1.46498 * 110.62886 * 142.68323 * 8 7 6 11 11 C 1.34777 * 120.00314 * 90.28914 * 10 8 7 12 12 O 1.21584 * 119.99826 * 359.97438 * 11 10 8 13 13 N 1.34776 * 120.00153 * 180.02562 * 11 10 8 14 14 C 1.39276 * 120.00129 * 174.45126 * 13 11 10 15 15 C 1.39470 * 119.83638 * 338.64052 * 14 13 11 16 16 C 1.36366 * 120.17748 * 179.97438 * 15 14 13 17 17 C 1.40897 * 119.85025 * 359.97438 * 16 15 14 18 18 C 1.41154 * 120.15784 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00123 * 151.10210 * 18 17 16 20 20 C 1.39890 * 119.99994 * 331.10332 * 18 17 16 21 21 N 1.30878 * 120.00036 * 167.25242 * 20 18 17 22 22 Si 1.86803 * 119.99863 * 347.25070 * 20 18 17 23 23 H 1.48496 * 109.47447 * 95.27611 * 22 20 18 24 24 H 1.48502 * 109.47002 * 215.27444 * 22 20 18 25 25 H 1.48504 * 109.47118 * 335.27192 * 22 20 18 26 26 C 1.40837 * 119.68264 * 359.97438 * 17 16 15 27 27 C 1.36474 * 119.81878 * 359.74826 * 26 17 16 28 28 Cl 1.73595 * 119.92848 * 180.24803 * 27 26 17 29 29 H 1.09007 * 109.47053 * 59.99547 * 1 2 3 30 30 H 1.08994 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46805 * 300.00122 * 1 2 3 32 32 H 1.09001 * 110.37206 * 336.07143 * 5 3 2 33 33 H 1.08996 * 110.37474 * 98.40782 * 5 3 2 34 34 H 1.08998 * 110.37377 * 200.61957 * 7 6 5 35 35 H 1.09002 * 110.37440 * 78.28616 * 7 6 5 36 36 H 0.97000 * 119.99764 * 270.28679 * 10 8 7 37 37 H 0.96996 * 119.99880 * 354.44609 * 13 11 10 38 38 H 1.08004 * 119.91121 * 359.97438 * 15 14 13 39 39 H 1.08004 * 120.07569 * 179.97438 * 16 15 14 40 40 H 0.97003 * 119.99818 * 179.97438 * 21 20 18 41 41 H 1.08001 * 120.09182 * 180.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3515 2.0157 0.4998 5 6 2.3066 1.7660 -1.4444 6 8 3.5547 2.4935 -1.3474 7 6 4.3696 1.7313 -0.4306 8 6 3.3967 1.2808 0.6815 9 1 3.4234 1.9788 1.5183 10 7 3.7221 -0.0740 1.1344 11 6 4.5851 -0.2548 2.1536 12 8 5.0940 0.7065 2.6971 13 7 4.8848 -1.5011 2.5699 14 6 5.8618 -1.6941 3.5435 15 6 6.8228 -0.7083 3.7672 16 6 7.7822 -0.8897 4.7191 17 6 7.8013 -2.0765 5.4784 18 6 8.7918 -2.2713 6.4650 19 1 8.5808 -2.8852 7.3282 20 6 10.0467 -1.6693 6.3247 21 7 10.8740 -1.6372 7.3383 22 14 10.5415 -0.9113 4.6906 23 1 10.2459 0.5438 4.7101 24 1 11.9953 -1.1181 4.4692 25 1 9.7769 -1.5573 3.5936 26 6 6.8273 -3.0674 5.2481 27 6 5.8698 -2.8696 4.2960 28 17 4.6641 -4.0864 4.0143 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.4188 0.9041 -2.1020 33 1 1.5117 2.4187 -1.8052 34 1 5.1587 2.3572 -0.0138 35 1 4.7979 0.8646 -0.9341 36 1 3.3163 -0.8408 0.7006 37 1 4.4200 -2.2637 2.1914 38 1 6.8070 0.2012 3.1850 39 1 8.5258 -0.1255 4.8907 40 1 11.7443 -1.2200 7.2409 41 1 6.8355 -3.9795 5.8265 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459603708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:28 Heat of formation + Delta-G solvation = -106.966837 kcal Electronic energy + Delta-G solvation = -27109.999009 eV Core-core repulsion = 23015.608201 eV Total energy + Delta-G solvation = -4094.390808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.84752 -40.76435 -39.46235 -38.11354 -37.40493 -36.26240 -35.55817 -34.94636 -31.85040 -31.60573 -30.73743 -29.44877 -27.39389 -26.74007 -24.21449 -23.81708 -23.28199 -22.08236 -21.69476 -19.78454 -19.44416 -18.88480 -18.05675 -17.49109 -17.16155 -16.80421 -16.60036 -16.22620 -16.10629 -16.02337 -15.78386 -15.60581 -15.02693 -14.82993 -14.67684 -14.49768 -14.32395 -14.27158 -13.43184 -13.33834 -13.19639 -12.86820 -12.72530 -12.65313 -12.52245 -12.36732 -12.12577 -12.02236 -11.81919 -11.64683 -11.46401 -11.06799 -11.00240 -10.75557 -10.65482 -10.14077 -9.54901 -8.94446 -8.89899 -6.46668 0.49430 0.66847 1.22531 1.27428 1.38879 1.48271 1.51914 2.02127 2.10804 2.50095 2.57609 3.00519 3.25551 3.36259 3.39226 3.66592 3.90892 4.05989 4.13685 4.18048 4.36975 4.47355 4.57147 4.66961 4.68990 4.73005 4.73281 4.74667 4.77061 4.90956 4.94822 5.12178 5.26933 5.36236 5.42126 5.59345 5.70531 5.83361 5.98576 6.06665 6.12655 6.28584 6.59175 6.75047 7.00392 7.50758 8.15828 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015316 B = 0.003123 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.744551 B = 8964.354770 C =10476.363594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.389 6.389 3 C 0.057 3.943 4 H 0.103 0.897 5 C 0.024 3.976 6 O -0.382 6.382 7 C 0.036 3.964 8 C 0.132 3.868 9 H 0.097 0.903 10 N -0.707 5.707 11 C 0.698 3.302 12 O -0.611 6.611 13 N -0.656 5.656 14 C 0.053 3.947 15 C -0.082 4.082 16 C -0.226 4.226 17 C 0.073 3.927 18 C -0.466 4.466 19 H 0.066 0.934 20 C 0.048 3.952 21 N -0.845 5.845 22 Si 0.961 3.039 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.246 1.246 26 C -0.190 4.190 27 C -0.012 4.012 28 Cl -0.072 7.072 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.416 0.584 37 H 0.413 0.587 38 H 0.140 0.860 39 H 0.101 0.899 40 H 0.295 0.705 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.554 3.195 -18.712 27.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.308 6.308 3 C -0.003 4.003 4 H 0.121 0.879 5 C -0.053 4.053 6 O -0.300 6.300 7 C -0.042 4.042 8 C 0.025 3.975 9 H 0.115 0.885 10 N -0.365 5.365 11 C 0.399 3.601 12 O -0.491 6.491 13 N -0.303 5.303 14 C -0.043 4.043 15 C -0.103 4.103 16 C -0.246 4.246 17 C 0.069 3.931 18 C -0.496 4.496 19 H 0.084 0.916 20 C -0.167 4.167 21 N -0.471 5.471 22 Si 0.786 3.214 23 H -0.190 1.190 24 H -0.205 1.205 25 H -0.170 1.170 26 C -0.210 4.210 27 C -0.041 4.041 28 Cl -0.043 7.043 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.139 0.861 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.254 0.746 37 H 0.251 0.749 38 H 0.157 0.843 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.862 4.019 -18.260 26.558 hybrid contribution -0.048 -0.540 -0.092 0.550 sum -18.910 3.479 -18.352 26.580 Atomic orbital electron populations 1.23042 0.78604 1.04239 1.01166 1.87750 1.22020 1.26060 1.94935 1.23748 0.93611 0.86650 0.96263 0.87900 1.24174 0.87239 0.97868 0.96009 1.89243 1.27547 1.47954 1.65252 1.23861 0.94309 0.96711 0.89311 1.22309 0.93717 0.84130 0.97363 0.88470 1.44574 1.47355 1.09504 1.35089 1.16032 0.80248 0.83005 0.80784 1.90836 1.57326 1.40812 1.60170 1.41903 1.39851 1.07574 1.41014 1.16712 0.94389 0.96059 0.97136 1.20869 0.92482 0.98850 0.98075 1.20808 1.02343 0.98143 1.03317 1.17738 0.92916 0.90633 0.91768 1.19414 0.96927 1.27379 1.05854 0.91617 1.26771 0.95957 0.93066 1.00896 1.69691 1.09298 1.35484 1.32654 0.85556 0.76829 0.79281 0.79732 1.19050 1.20495 1.16989 1.20602 0.98642 1.00143 1.01634 1.20082 0.94121 0.90681 0.99230 1.98275 1.55524 1.54845 1.95693 0.92159 0.88291 0.93400 0.90471 0.86132 0.88794 0.91223 0.74565 0.74938 0.84251 0.88146 0.89434 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.86 113.37 1.23 1.42 16 2 O -0.39 -5.07 8.63 -148.98 -1.29 -6.35 16 3 C 0.06 0.76 3.59 31.61 0.11 0.88 16 4 H 0.10 1.09 7.84 -2.39 -0.02 1.07 16 5 C 0.02 0.30 7.40 72.48 0.54 0.84 16 6 O -0.38 -7.44 11.66 -148.98 -1.74 -9.18 16 7 C 0.04 0.74 7.36 72.49 0.53 1.27 16 8 C 0.13 2.64 3.47 46.01 0.16 2.80 16 9 H 0.10 2.28 7.55 -2.38 -0.02 2.26 16 10 N -0.71 -15.69 4.88 -452.96 -2.21 -17.90 16 11 C 0.70 21.88 8.39 179.05 1.50 23.38 16 12 O -0.61 -23.98 12.92 -3.98 -0.05 -24.03 16 13 N -0.66 -20.65 5.21 -316.69 -1.65 -22.30 16 14 C 0.05 2.11 6.50 38.58 0.25 2.36 16 15 C -0.08 -3.70 8.68 22.13 0.19 -3.51 16 16 C -0.23 -11.04 6.84 22.48 0.15 -10.88 16 17 C 0.07 3.69 5.19 -21.28 -0.11 3.58 16 18 C -0.47 -25.68 9.60 23.39 0.22 -25.46 16 19 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16 20 C 0.05 2.57 5.47 85.24 0.47 3.04 16 21 N -0.85 -45.99 13.93 21.82 0.30 -45.69 16 22 Si 0.96 43.15 24.36 68.60 1.67 44.82 16 23 H -0.26 -11.55 6.77 99.48 0.67 -10.87 16 24 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.25 -11.19 6.45 99.48 0.64 -10.54 16 26 C -0.19 -8.55 9.50 22.49 0.21 -8.33 16 27 C -0.01 -0.47 6.30 22.18 0.14 -0.34 16 28 Cl -0.07 -2.22 27.70 -2.72 -0.08 -2.29 16 29 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.35 8.11 -2.39 -0.02 0.33 16 32 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 33 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.07 1.39 8.06 -2.39 -0.02 1.37 16 36 H 0.42 7.47 7.32 -92.71 -0.68 6.79 16 37 H 0.41 10.45 7.66 -92.71 -0.71 9.74 16 38 H 0.14 6.26 5.50 -2.91 -0.02 6.24 16 39 H 0.10 4.93 4.19 -2.91 -0.01 4.91 16 40 H 0.30 14.46 8.30 -92.71 -0.77 13.69 16 41 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -64.28 350.06 0.19 -64.09 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: -0.38 Total: 27.78 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 5.61 Total: -8.96 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -3.56 Total: -85.89 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -3.08 Total: -39.56 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.67 Total: 44.82 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -0.08 Total: -2.29 kcal Total: -64.28 0.19 -64.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459603708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.873 kcal (2) G-P(sol) polarization free energy of solvation -64.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds