Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45212 * 1 3 3 C 1.34634 * 116.99582 * 2 1 4 4 O 1.21507 * 120.00238 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99772 * 180.02562 * 3 2 1 6 6 C 1.46503 * 120.00032 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47056 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.47192 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47038 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00578 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99664 * 180.27943 * 9 8 7 12 12 C 1.39270 * 119.99771 * 175.47645 * 11 9 8 13 13 C 1.39463 * 119.84075 * 34.72312 * 12 11 9 14 14 C 1.36370 * 120.18240 * 179.75620 * 13 12 11 15 15 C 1.40894 * 119.84714 * 0.51286 * 14 13 12 16 16 C 1.41149 * 120.15841 * 179.75566 * 15 14 13 17 17 H 1.07997 * 119.99793 * 34.75906 * 16 15 14 18 18 C 1.39904 * 120.00350 * 214.74965 * 16 15 14 19 19 N 1.30871 * 119.99618 * 355.60221 * 18 16 15 20 20 Si 1.86793 * 120.00117 * 175.60319 * 18 16 15 21 21 H 1.48507 * 109.47241 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47412 * 120.00177 * 20 18 16 23 23 H 1.48498 * 109.47279 * 240.00355 * 20 18 16 24 24 C 1.40840 * 119.68427 * 359.74136 * 15 14 13 25 25 C 1.36481 * 119.81637 * 359.97438 * 24 15 14 26 26 Cl 1.73599 * 119.92655 * 179.97438 * 25 24 15 27 27 H 1.09004 * 109.46551 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47030 * 300.00253 * 1 2 3 29 29 H 1.08999 * 109.46511 * 60.00553 * 1 2 3 30 30 H 0.97002 * 119.99681 * 359.97438 * 5 3 2 31 31 H 1.09000 * 109.46944 * 59.99622 * 6 5 3 32 32 H 1.09000 * 109.46609 * 299.99517 * 6 5 3 33 33 H 1.09005 * 109.46676 * 59.99696 * 7 6 5 34 34 H 1.08997 * 109.47469 * 300.00568 * 7 6 5 35 35 H 1.09005 * 109.46854 * 60.00093 * 8 7 6 36 36 H 1.09000 * 109.46806 * 300.00442 * 8 7 6 37 37 H 0.97000 * 120.00370 * 355.47309 * 11 9 8 38 38 H 1.08001 * 119.90855 * 0.02562 * 13 12 11 39 39 H 1.08000 * 120.07772 * 180.22497 * 14 13 12 40 40 H 0.97004 * 119.99867 * 179.97438 * 19 18 16 41 41 H 1.07997 * 120.08999 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.0743 2.5756 -0.0011 7 6 5.5911 2.3752 -0.0010 8 6 6.2857 3.7384 -0.0022 9 6 7.7796 3.5409 -0.0027 10 8 8.2433 2.4202 -0.0017 11 7 8.6006 4.6098 0.0019 12 6 9.9783 4.4292 0.0966 13 6 10.5765 3.3241 -0.5082 14 6 11.9255 3.1431 -0.4241 15 6 12.7145 4.0702 0.2852 16 6 14.1108 3.8865 0.3807 17 1 14.6567 3.4570 -0.4462 18 6 14.7874 4.2608 1.5466 19 7 14.1414 4.8598 2.5144 20 14 16.6129 3.9058 1.7218 21 1 17.1049 3.2260 0.4966 22 1 17.3497 5.1815 1.9092 23 1 16.8358 3.0280 2.8987 24 6 12.1035 5.1812 0.8981 25 6 10.7530 5.3525 0.8006 26 17 9.9967 6.7206 1.5556 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 3.9375 0.4567 -0.0005 31 1 3.7817 3.1328 0.8888 32 1 3.7811 3.1323 -0.8912 33 1 5.8839 1.8177 -0.8907 34 1 5.8840 1.8185 0.8892 35 1 5.9928 4.2962 0.8874 36 1 5.9927 4.2946 -0.8926 37 1 8.2320 5.5048 -0.0608 38 1 9.9703 2.6119 -1.0484 39 1 12.3875 2.2886 -0.8962 40 1 14.6105 5.1190 3.3229 41 1 12.7020 5.8961 1.4431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495868486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -115.220897 kcal Electronic energy + Delta-G solvation = -25498.127536 eV Core-core repulsion = 21403.378805 eV Total energy + Delta-G solvation = -4094.748731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -40.68805 -39.85555 -37.73415 -37.19182 -35.72692 -35.55816 -34.51894 -33.17934 -32.81516 -29.51549 -29.31751 -28.28914 -26.83503 -24.95570 -22.65749 -21.66185 -21.63017 -20.83851 -19.70404 -18.91067 -17.65742 -17.33376 -16.94784 -16.84961 -16.38199 -15.96836 -15.39562 -15.12209 -14.68496 -14.35442 -14.29117 -13.82426 -13.68999 -13.40073 -12.98702 -12.66131 -12.58379 -12.40598 -12.31653 -12.20774 -11.74354 -11.66899 -11.46682 -11.18286 -11.12880 -11.05622 -10.98694 -10.92172 -10.62568 -10.34720 -10.04678 -9.79814 -9.56437 -9.52533 -9.23015 -9.02262 -7.59476 -7.06159 -6.76017 -4.50902 1.88172 2.31998 2.52432 2.79259 2.94336 3.04082 3.08860 3.11495 3.19691 3.60562 3.88360 3.98147 4.52169 4.59608 4.75640 4.78284 4.80682 4.87554 5.12392 5.20354 5.25090 5.35730 5.40212 5.48165 5.83650 5.86856 6.03984 6.06088 6.15710 6.48131 6.60686 6.83873 6.96223 7.07047 7.10965 7.27647 7.53356 7.61685 7.82395 8.01382 8.03984 8.09077 8.39255 8.61308 8.74518 8.77299 10.14344 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.023270 B = 0.001869 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.995890 B =14979.157657 C =15733.423652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.374 6.374 3 C 0.645 3.355 4 O -0.574 6.574 5 N -0.707 5.707 6 C 0.136 3.864 7 C -0.116 4.116 8 C -0.135 4.135 9 C 0.501 3.499 10 O -0.532 6.532 11 N -0.650 5.650 12 C 0.011 3.989 13 C -0.075 4.075 14 C -0.202 4.202 15 C 0.107 3.893 16 C -0.455 4.455 17 H 0.082 0.918 18 C 0.069 3.931 19 N -0.803 5.803 20 Si 0.918 3.082 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.273 1.273 24 C -0.136 4.136 25 C -0.022 4.022 26 Cl -0.119 7.119 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.410 0.590 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.399 0.601 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.281 0.719 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.830 -3.409 -3.448 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.288 6.288 3 C 0.397 3.603 4 O -0.463 6.463 5 N -0.366 5.366 6 C 0.013 3.987 7 C -0.154 4.154 8 C -0.176 4.176 9 C 0.288 3.712 10 O -0.409 6.409 11 N -0.294 5.294 12 C -0.083 4.083 13 C -0.095 4.095 14 C -0.222 4.222 15 C 0.104 3.896 16 C -0.485 4.485 17 H 0.100 0.900 18 C -0.148 4.148 19 N -0.430 5.430 20 Si 0.743 3.257 21 H -0.184 1.184 22 H -0.198 1.198 23 H -0.199 1.199 24 C -0.156 4.156 25 C -0.050 4.050 26 Cl -0.091 7.091 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.245 0.755 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.233 0.767 38 H 0.136 0.864 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.950 -3.510 -3.130 18.556 hybrid contribution 0.612 0.168 0.394 0.747 sum -17.338 -3.342 -2.736 17.868 Atomic orbital electron populations 1.23199 0.74310 1.03496 1.02764 1.86249 1.24299 1.31140 1.87091 1.18160 0.83510 0.82173 0.76419 1.91005 1.64683 1.34912 1.55732 1.44683 1.02960 1.11029 1.77957 1.21435 0.91636 0.82614 1.02994 1.21513 0.91598 0.97388 1.04947 1.21500 0.92366 0.98918 1.04810 1.20490 0.88583 0.84975 0.77122 1.90685 1.77382 1.23770 1.49061 1.42973 1.05419 1.09076 1.71891 1.16910 0.81238 1.01051 1.09084 1.20384 0.94676 0.95995 0.98425 1.20902 0.92680 1.00421 1.08216 1.17623 0.93640 0.88794 0.89519 1.19551 0.92306 1.35930 1.00695 0.90027 1.25940 1.00775 0.92732 0.95329 1.69743 1.37689 1.29821 1.05726 0.86088 0.81368 0.78925 0.79321 1.18446 1.19847 1.19852 1.21209 0.90620 0.99703 1.04109 1.20439 0.93817 0.90056 1.00696 1.98252 1.83024 1.45949 1.81862 0.87942 0.91823 0.91825 0.75495 0.90884 0.90899 0.90051 0.89992 0.88534 0.88681 0.76655 0.86392 0.87880 0.90789 0.83833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 10.56 101.05 1.07 1.44 16 2 O -0.37 -3.56 10.62 -40.31 -0.43 -3.99 16 3 C 0.64 7.19 8.75 54.06 0.47 7.66 16 4 O -0.57 -8.07 16.13 -19.28 -0.31 -8.38 16 5 N -0.71 -6.32 5.56 -65.28 -0.36 -6.69 16 6 C 0.14 1.15 5.67 -4.04 -0.02 1.12 16 7 C -0.12 -1.06 4.62 -26.73 -0.12 -1.18 16 8 C -0.14 -1.32 5.70 -27.89 -0.16 -1.48 16 9 C 0.50 7.75 7.66 -10.99 -0.08 7.66 16 10 O -0.53 -10.23 13.37 5.56 0.07 -10.15 16 11 N -0.65 -10.80 5.02 -9.71 -0.05 -10.85 16 12 C 0.01 0.23 6.32 -83.52 -0.53 -0.30 16 13 C -0.07 -1.67 8.61 -39.80 -0.34 -2.01 16 14 C -0.20 -4.78 9.74 -39.25 -0.38 -5.16 16 15 C 0.11 2.73 5.55 -106.80 -0.59 2.14 16 16 C -0.45 -11.49 9.02 -37.85 -0.34 -11.84 16 17 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 18 C 0.07 1.66 5.42 -17.34 -0.09 1.57 16 19 N -0.80 -20.14 10.59 55.55 0.59 -19.55 16 20 Si 0.92 18.22 29.56 -169.99 -5.03 13.19 16 21 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 C -0.14 -3.36 8.38 -39.23 -0.33 -3.69 16 25 C -0.02 -0.49 6.30 -39.71 -0.25 -0.74 16 26 Cl -0.12 -2.22 27.92 -51.86 -1.45 -3.67 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.41 2.92 8.58 -40.82 -0.35 2.57 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 34 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.40 5.52 8.05 -40.82 -0.33 5.19 16 38 H 0.12 2.56 6.18 -52.49 -0.32 2.23 16 39 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 40 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 41 H 0.14 3.73 6.13 -52.49 -0.32 3.40 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -31.08 368.73 -8.21 -39.29 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.09 Total: 10.06 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -1.71 Total: -4.81 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.18 Total: -37.08 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.66 Total: -22.53 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -1.45 Total: -3.67 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.08 -8.21 -39.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495868486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.929 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds