Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45212 * 1 3 3 C 1.34634 * 116.99582 * 2 1 4 4 O 1.21507 * 120.00238 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99772 * 180.02562 * 3 2 1 6 6 C 1.46503 * 120.00032 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47056 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.47192 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47038 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00578 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99664 * 180.27943 * 9 8 7 12 12 C 1.39270 * 119.99771 * 175.47645 * 11 9 8 13 13 C 1.39463 * 119.84075 * 34.72312 * 12 11 9 14 14 C 1.36370 * 120.18240 * 179.75620 * 13 12 11 15 15 C 1.40894 * 119.84714 * 0.51286 * 14 13 12 16 16 C 1.41149 * 120.15841 * 179.75566 * 15 14 13 17 17 H 1.07997 * 119.99793 * 34.75906 * 16 15 14 18 18 C 1.39904 * 120.00350 * 214.74965 * 16 15 14 19 19 N 1.30871 * 119.99618 * 355.60221 * 18 16 15 20 20 Si 1.86793 * 120.00117 * 175.60319 * 18 16 15 21 21 H 1.48507 * 109.47241 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47412 * 120.00177 * 20 18 16 23 23 H 1.48498 * 109.47279 * 240.00355 * 20 18 16 24 24 C 1.40840 * 119.68427 * 359.74136 * 15 14 13 25 25 C 1.36481 * 119.81637 * 359.97438 * 24 15 14 26 26 Cl 1.73599 * 119.92655 * 179.97438 * 25 24 15 27 27 H 1.09004 * 109.46551 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47030 * 300.00253 * 1 2 3 29 29 H 1.08999 * 109.46511 * 60.00553 * 1 2 3 30 30 H 0.97002 * 119.99681 * 359.97438 * 5 3 2 31 31 H 1.09000 * 109.46944 * 59.99622 * 6 5 3 32 32 H 1.09000 * 109.46609 * 299.99517 * 6 5 3 33 33 H 1.09005 * 109.46676 * 59.99696 * 7 6 5 34 34 H 1.08997 * 109.47469 * 300.00568 * 7 6 5 35 35 H 1.09005 * 109.46854 * 60.00093 * 8 7 6 36 36 H 1.09000 * 109.46806 * 300.00442 * 8 7 6 37 37 H 0.97000 * 120.00370 * 355.47309 * 11 9 8 38 38 H 1.08001 * 119.90855 * 0.02562 * 13 12 11 39 39 H 1.08000 * 120.07772 * 180.22497 * 14 13 12 40 40 H 0.97004 * 119.99867 * 179.97438 * 19 18 16 41 41 H 1.07997 * 120.08999 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.0743 2.5756 -0.0011 7 6 5.5911 2.3752 -0.0010 8 6 6.2857 3.7384 -0.0022 9 6 7.7796 3.5409 -0.0027 10 8 8.2433 2.4202 -0.0017 11 7 8.6006 4.6098 0.0019 12 6 9.9783 4.4292 0.0966 13 6 10.5765 3.3241 -0.5082 14 6 11.9255 3.1431 -0.4241 15 6 12.7145 4.0702 0.2852 16 6 14.1108 3.8865 0.3807 17 1 14.6567 3.4570 -0.4462 18 6 14.7874 4.2608 1.5466 19 7 14.1414 4.8598 2.5144 20 14 16.6129 3.9058 1.7218 21 1 17.1049 3.2260 0.4966 22 1 17.3497 5.1815 1.9092 23 1 16.8358 3.0280 2.8987 24 6 12.1035 5.1812 0.8981 25 6 10.7530 5.3525 0.8006 26 17 9.9967 6.7206 1.5556 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 3.9375 0.4567 -0.0005 31 1 3.7817 3.1328 0.8888 32 1 3.7811 3.1323 -0.8912 33 1 5.8839 1.8177 -0.8907 34 1 5.8840 1.8185 0.8892 35 1 5.9928 4.2962 0.8874 36 1 5.9927 4.2946 -0.8926 37 1 8.2320 5.5048 -0.0608 38 1 9.9703 2.6119 -1.0484 39 1 12.3875 2.2886 -0.8962 40 1 14.6105 5.1190 3.3229 41 1 12.7020 5.8961 1.4431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495868486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -135.661521 kcal Electronic energy + Delta-G solvation = -25499.013907 eV Core-core repulsion = 21403.378805 eV Total energy + Delta-G solvation = -4095.635103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.49442 -41.24230 -39.30972 -38.00248 -37.21826 -36.62411 -36.08031 -34.76304 -33.78652 -31.29708 -30.95553 -29.09501 -27.78153 -26.47325 -23.89091 -23.15395 -22.39719 -22.38944 -21.05417 -19.67749 -19.41417 -18.51036 -17.98972 -17.72468 -17.69650 -17.15079 -16.87795 -16.08203 -15.95438 -15.74566 -15.20950 -15.01361 -14.95969 -14.60737 -14.41170 -14.29411 -14.08495 -13.49756 -13.32693 -13.14145 -13.07333 -12.95535 -12.80068 -12.67438 -12.48573 -12.26278 -11.93612 -11.87603 -11.81017 -11.79526 -11.71514 -11.56114 -11.23031 -10.80808 -10.59572 -10.26388 -9.38637 -8.80727 -8.54605 -6.38931 0.62146 0.96561 1.19670 1.39987 1.41446 1.45580 1.56070 1.69359 1.80424 2.22721 2.35229 2.73707 3.31356 3.53178 3.67907 4.00251 4.04331 4.27629 4.35076 4.37406 4.39691 4.56793 4.62562 4.69260 4.73649 4.76442 4.94628 5.01376 5.10553 5.14057 5.24351 5.30023 5.32838 5.38580 5.47473 5.73501 5.86897 6.05017 6.24039 6.33604 6.52694 6.67173 6.87101 6.90396 7.24492 7.36818 8.37467 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.023270 B = 0.001869 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.995890 B =14979.157657 C =15733.423652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.378 6.378 3 C 0.641 3.359 4 O -0.608 6.608 5 N -0.699 5.699 6 C 0.141 3.859 7 C -0.106 4.106 8 C -0.124 4.124 9 C 0.500 3.500 10 O -0.571 6.571 11 N -0.648 5.648 12 C 0.028 3.972 13 C -0.083 4.083 14 C -0.211 4.211 15 C 0.076 3.924 16 C -0.489 4.489 17 H 0.081 0.919 18 C 0.028 3.972 19 N -0.836 5.836 20 Si 0.989 3.011 21 H -0.257 1.257 22 H -0.265 1.265 23 H -0.270 1.270 24 C -0.153 4.153 25 C -0.031 4.031 26 Cl -0.087 7.087 27 H 0.135 0.865 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.418 0.582 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.415 0.585 38 H 0.125 0.875 39 H 0.108 0.892 40 H 0.286 0.714 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.360 -3.342 -3.539 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.292 6.292 3 C 0.394 3.606 4 O -0.500 6.500 5 N -0.359 5.359 6 C 0.019 3.981 7 C -0.145 4.145 8 C -0.164 4.164 9 C 0.289 3.711 10 O -0.450 6.450 11 N -0.294 5.294 12 C -0.067 4.067 13 C -0.104 4.104 14 C -0.231 4.231 15 C 0.073 3.927 16 C -0.519 4.519 17 H 0.099 0.901 18 C -0.185 4.185 19 N -0.464 5.464 20 Si 0.810 3.190 21 H -0.181 1.181 22 H -0.190 1.190 23 H -0.195 1.195 24 C -0.174 4.174 25 C -0.060 4.060 26 Cl -0.058 7.058 27 H 0.153 0.847 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.255 0.745 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.252 0.748 38 H 0.143 0.857 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.516 -3.441 -3.232 20.079 hybrid contribution 0.857 0.142 0.401 0.956 sum -18.660 -3.299 -2.831 19.159 Atomic orbital electron populations 1.23497 0.72764 1.05599 1.02607 1.86261 1.25875 1.30253 1.86763 1.18352 0.83932 0.82177 0.76124 1.90978 1.65498 1.36030 1.57458 1.44700 1.02470 1.11743 1.77019 1.21382 0.90830 0.82463 1.03410 1.21390 0.91908 0.96946 1.04237 1.21546 0.87414 0.99903 1.07559 1.21528 0.90689 0.83792 0.75050 1.90674 1.78553 1.25332 1.50426 1.43030 1.03612 1.10605 1.72128 1.16996 0.83482 0.99567 1.06678 1.20527 0.94258 0.96747 0.98826 1.21060 0.93415 1.00474 1.08171 1.17924 0.94361 0.89672 0.90711 1.19773 0.92822 1.37683 1.01603 0.90108 1.26766 1.05058 0.92100 0.94534 1.69817 1.39430 1.30800 1.06308 0.85039 0.75820 0.78922 0.79214 1.18058 1.18983 1.19509 1.21101 0.91750 0.99621 1.04951 1.20483 0.93418 0.91443 1.00648 1.98249 1.82198 1.44095 1.81264 0.84746 0.92057 0.91964 0.74484 0.90670 0.90283 0.90526 0.91104 0.86089 0.85392 0.74783 0.85744 0.87357 0.90290 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.57 10.56 113.37 1.20 1.76 16 2 O -0.38 -6.69 10.62 -55.43 -0.59 -7.28 16 3 C 0.64 13.47 8.75 129.79 1.14 14.60 16 4 O -0.61 -16.46 16.13 19.82 0.32 -16.14 16 5 N -0.70 -11.29 5.56 -590.85 -3.29 -14.58 16 6 C 0.14 2.04 5.67 86.38 0.49 2.53 16 7 C -0.11 -1.67 4.62 30.59 0.14 -1.53 16 8 C -0.12 -1.98 5.70 29.85 0.17 -1.81 16 9 C 0.50 14.30 7.66 87.66 0.67 14.98 16 10 O -0.57 -21.28 13.37 -3.04 -0.04 -21.32 16 11 N -0.65 -20.16 5.02 -303.03 -1.52 -21.68 16 12 C 0.03 1.15 6.32 38.58 0.24 1.39 16 13 C -0.08 -3.74 8.61 22.13 0.19 -3.55 16 14 C -0.21 -10.25 9.74 22.48 0.22 -10.03 16 15 C 0.08 4.01 5.55 -21.28 -0.12 3.89 16 16 C -0.49 -25.57 9.02 23.39 0.21 -25.36 16 17 H 0.08 4.05 7.85 -2.91 -0.02 4.03 16 18 C 0.03 1.40 5.42 85.24 0.46 1.86 16 19 N -0.84 -43.02 10.59 21.82 0.23 -42.79 16 20 Si 0.99 37.79 29.56 68.60 2.03 39.81 16 21 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 22 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 23 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 24 C -0.15 -7.80 8.38 22.50 0.19 -7.61 16 25 C -0.03 -1.39 6.30 22.18 0.14 -1.25 16 26 Cl -0.09 -3.12 27.92 -2.72 -0.08 -3.19 16 27 H 0.13 0.62 8.14 -2.38 -0.02 0.61 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.42 5.28 8.58 -92.71 -0.80 4.48 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.31 8.10 -2.38 -0.02 1.29 16 34 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 35 H 0.12 1.45 8.14 -2.38 -0.02 1.44 16 36 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.41 10.25 8.05 -92.71 -0.75 9.50 16 38 H 0.12 5.38 6.18 -2.91 -0.02 5.36 16 39 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 40 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 41 H 0.13 6.80 6.13 -2.91 -0.02 6.78 16 Total: -1.00 -69.23 368.73 1.96 -67.27 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: -0.45 Total: 30.02 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 5.34 Total: -10.12 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -4.57 Total: -79.05 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -0.31 Total: -44.74 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.81 kcal Atomic # 17 Polarization: -3.12 SS G_CDS: -0.08 Total: -3.19 kcal Total: -69.23 1.96 -67.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495868486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.392 kcal (2) G-P(sol) polarization free energy of solvation -69.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds