Wall clock time and date at job start Sat Apr 11 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45203 * 109.47197 * 2 1 4 4 C 1.34634 * 116.99949 * 180.02562 * 3 2 1 5 5 O 1.21514 * 120.00236 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00079 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00013 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46911 * 179.97438 * 7 6 4 9 9 C 1.50700 * 109.47142 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00128 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00243 * 180.02562 * 9 8 7 12 12 C 1.39141 * 120.00163 * 174.78164 * 11 9 8 13 13 C 1.38610 * 120.21143 * 33.99727 * 12 11 9 14 14 C 1.38194 * 120.17391 * 179.97438 * 13 12 11 15 15 C 1.39010 * 120.60084 * 0.02562 * 14 13 12 16 16 Cl 1.73600 * 119.78976 * 179.97438 * 15 14 13 17 17 C 1.37546 * 120.41697 * 359.73848 * 15 14 13 18 18 C 1.40735 * 119.81422 * 0.49322 * 17 15 14 19 19 C 1.41069 * 120.29186 * 179.78968 * 18 17 15 20 20 H 1.08000 * 119.99934 * 139.90751 * 19 18 17 21 21 C 1.39949 * 120.00123 * 320.17921 * 19 18 17 22 22 N 1.30853 * 120.00336 * 176.34857 * 21 19 18 23 23 Si 1.86803 * 119.99904 * 356.34232 * 21 19 18 24 24 H 1.48502 * 109.47143 * 90.09838 * 23 21 19 25 25 H 1.48496 * 109.47347 * 210.09697 * 23 21 19 26 26 H 1.48504 * 109.47208 * 330.10213 * 23 21 19 27 27 H 1.08999 * 109.47521 * 59.98905 * 1 2 3 28 28 H 1.09003 * 109.47442 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47189 * 299.99435 * 1 2 3 30 30 H 1.08998 * 109.46569 * 240.00868 * 2 1 3 31 31 H 1.08992 * 109.47441 * 120.00697 * 2 1 3 32 32 H 0.97004 * 119.99748 * 0.02562 * 6 4 3 33 33 H 1.08998 * 109.47393 * 59.99966 * 7 6 4 34 34 H 1.09006 * 109.47190 * 299.99513 * 7 6 4 35 35 H 1.09011 * 109.47307 * 59.99782 * 8 7 6 36 36 H 1.08997 * 109.47454 * 299.99734 * 8 7 6 37 37 H 0.97004 * 119.99548 * 354.77803 * 11 9 8 38 38 H 1.07997 * 119.91355 * 359.97438 * 13 12 11 39 39 H 1.07996 * 119.70168 * 180.02562 * 14 13 12 40 40 H 1.08005 * 120.09093 * 180.25286 * 17 15 14 41 41 H 0.96999 * 119.99969 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5454 -0.0005 5 8 4.0890 0.5817 -0.0005 6 7 3.8639 2.7908 0.0000 7 6 5.3163 2.9827 -0.0012 8 6 5.6329 4.4796 -0.0010 9 6 7.1269 4.6770 -0.0015 10 8 7.8657 3.7152 -0.0016 11 7 7.6421 5.9225 -0.0009 12 6 9.0169 6.1066 0.1082 13 6 9.8903 5.1923 -0.4597 14 6 11.2557 5.3763 -0.3514 15 6 11.7700 6.4757 0.3262 16 17 13.4888 6.6857 0.4501 17 6 10.9257 7.4007 0.8949 18 6 9.5323 7.2280 0.7994 19 6 8.6571 8.1682 1.3827 20 1 7.7571 8.4628 0.8635 21 6 8.9581 8.7234 2.6316 22 7 8.1841 9.6477 3.1404 23 14 10.4645 8.1446 3.5725 24 1 11.6331 8.9812 3.1988 25 1 10.2144 8.2671 5.0311 26 1 10.7437 6.7255 3.2355 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.8932 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 3.2730 3.5601 0.0011 33 1 5.7430 2.5216 -0.8919 34 1 5.7446 2.5203 0.8881 35 1 5.2060 4.9412 0.8896 36 1 5.2047 4.9417 -0.8904 37 1 7.0543 6.6905 -0.0766 38 1 9.5028 4.3340 -0.9883 39 1 11.9292 4.6594 -0.7971 40 1 11.3311 8.2551 1.4166 41 1 8.3930 10.0327 4.0059 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496777597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:59 Heat of formation + Delta-G solvation = -113.784269 kcal Electronic energy + Delta-G solvation = -26004.134319 eV Core-core repulsion = 21909.447885 eV Total energy + Delta-G solvation = -4094.686434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.60769 -39.93295 -37.92880 -37.10998 -35.82151 -35.26095 -33.93541 -33.69663 -32.18223 -30.95025 -30.70511 -28.51739 -25.54995 -24.60816 -23.24996 -22.20719 -21.44154 -20.86652 -19.87656 -18.90906 -17.70504 -17.27651 -16.96312 -16.94780 -16.43139 -15.80727 -15.49352 -14.90634 -14.65702 -14.49773 -14.07459 -14.01102 -13.74230 -13.41969 -13.25414 -13.03849 -12.77905 -12.65743 -12.28292 -12.06133 -11.98751 -11.90504 -11.63976 -11.56314 -11.35141 -11.06218 -10.78144 -10.76855 -10.70512 -10.51752 -10.07080 -9.98041 -9.52278 -9.45109 -9.36944 -9.04376 -7.86484 -7.26054 -7.03030 -4.70773 1.91429 2.04588 2.38057 2.67603 2.94273 2.97631 3.05411 3.13378 3.23743 3.58217 3.88335 4.06351 4.33199 4.58965 4.62773 4.67607 4.93953 4.97604 4.99343 5.08864 5.23460 5.38256 5.44101 5.60060 5.75258 5.80973 5.87023 5.99059 6.09288 6.21490 6.36949 6.39434 6.59166 6.92153 7.06926 7.09790 7.19473 7.33804 7.38952 7.69564 7.93931 8.07654 8.16172 8.31372 8.55841 8.65739 9.97637 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015803 B = 0.002323 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.405144 B =12050.331859 C =13306.737139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 O -0.374 6.374 4 C 0.647 3.353 5 O -0.569 6.569 6 N -0.709 5.709 7 C 0.152 3.848 8 C -0.153 4.153 9 C 0.509 3.491 10 O -0.534 6.534 11 N -0.637 5.637 12 C 0.047 3.953 13 C -0.073 4.073 14 C -0.205 4.205 15 C 0.004 3.996 16 Cl -0.115 7.115 17 C -0.208 4.208 18 C 0.092 3.908 19 C -0.454 4.454 20 H 0.094 0.906 21 C 0.088 3.912 22 N -0.816 5.816 23 Si 0.897 3.103 24 H -0.265 1.265 25 H -0.288 1.288 26 H -0.241 1.241 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.407 0.593 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.409 0.591 38 H 0.129 0.871 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.835 -8.903 -4.925 15.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.288 6.288 4 C 0.399 3.601 5 O -0.458 6.458 6 N -0.369 5.369 7 C 0.030 3.970 8 C -0.193 4.193 9 C 0.295 3.705 10 O -0.412 6.412 11 N -0.280 5.280 12 C -0.047 4.047 13 C -0.094 4.094 14 C -0.226 4.226 15 C -0.023 4.023 16 Cl -0.086 7.086 17 C -0.228 4.228 18 C 0.088 3.912 19 C -0.483 4.483 20 H 0.112 0.888 21 C -0.130 4.130 22 N -0.441 5.441 23 Si 0.723 3.277 24 H -0.191 1.191 25 H -0.216 1.216 26 H -0.164 1.164 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.241 0.759 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.245 0.755 38 H 0.147 0.853 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.002 -9.919 -4.706 15.543 hybrid contribution 0.272 0.736 0.632 1.008 sum -10.731 -9.183 -4.074 14.699 Atomic orbital electron populations 1.21832 0.92573 1.03063 1.03549 1.22946 0.94744 0.78698 1.02887 1.86225 1.22189 1.33301 1.87132 1.18053 0.81063 0.84421 0.76558 1.91031 1.59780 1.39690 1.55276 1.44663 1.08492 1.05378 1.78364 1.21060 0.76501 0.94814 1.04643 1.21771 0.94676 0.97303 1.05596 1.20165 0.89786 0.83331 0.77190 1.90699 1.61001 1.40039 1.49441 1.42844 1.06891 1.07900 1.70327 1.17734 0.81844 0.97779 1.07315 1.20795 0.91745 0.98861 0.97997 1.20276 0.94759 0.99222 1.08322 1.20701 0.81637 0.97637 1.02318 1.98281 1.15701 1.97330 1.97321 1.20886 0.92769 1.00646 1.08506 1.17462 0.91149 0.91687 0.90944 1.19097 1.07617 1.19033 1.02580 0.88840 1.25960 0.97132 0.92251 0.97660 1.69585 1.36339 1.20212 1.17930 0.86502 0.81060 0.82603 0.77495 1.19076 1.21551 1.16396 0.91472 0.90004 0.91438 0.91139 0.91113 0.75855 0.90053 0.89958 0.87671 0.88053 0.75493 0.85333 0.87091 0.86608 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.29 37.16 0.38 -0.44 16 2 C 0.08 0.69 6.19 37.16 0.23 0.92 16 3 O -0.37 -3.99 10.27 -40.31 -0.41 -4.41 16 4 C 0.65 8.25 8.75 54.06 0.47 8.72 16 5 O -0.57 -9.31 16.13 -19.28 -0.31 -9.62 16 6 N -0.71 -7.28 5.56 -65.28 -0.36 -7.65 16 7 C 0.15 1.81 4.96 -4.04 -0.02 1.79 16 8 C -0.15 -1.60 5.82 -27.88 -0.16 -1.76 16 9 C 0.51 8.06 7.68 -10.98 -0.08 7.97 16 10 O -0.53 -10.33 13.33 5.55 0.07 -10.26 16 11 N -0.64 -10.96 5.03 -9.48 -0.05 -11.00 16 12 C 0.05 1.00 6.35 -83.18 -0.53 0.47 16 13 C -0.07 -1.52 8.69 -39.46 -0.34 -1.86 16 14 C -0.21 -4.20 9.82 -39.31 -0.39 -4.58 16 15 C 0.00 0.08 6.31 -39.55 -0.25 -0.17 16 16 Cl -0.11 -2.16 28.94 -51.86 -1.50 -3.66 16 17 C -0.21 -4.72 6.62 -38.89 -0.26 -4.98 16 18 C 0.09 2.11 5.01 -106.66 -0.53 1.57 16 19 C -0.45 -10.78 8.99 -37.87 -0.34 -11.12 16 20 H 0.09 2.21 7.34 -52.49 -0.39 1.82 16 21 C 0.09 2.14 5.51 -17.33 -0.10 2.05 16 22 N -0.82 -20.24 13.93 55.55 0.77 -19.46 16 23 Si 0.90 20.04 24.49 -169.99 -4.16 15.87 16 24 H -0.27 -5.80 6.79 56.52 0.38 -5.42 16 25 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.24 -5.63 6.54 56.52 0.37 -5.26 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.41 2.94 8.58 -40.82 -0.35 2.59 16 33 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 34 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 35 H 0.11 0.94 8.14 -51.92 -0.42 0.52 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.41 6.15 7.72 -40.82 -0.32 5.83 16 38 H 0.13 2.59 6.11 -52.49 -0.32 2.27 16 39 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 40 H 0.12 2.66 4.95 -52.48 -0.26 2.40 16 41 H 0.29 6.57 8.30 -40.82 -0.34 6.24 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -30.14 363.34 -7.43 -37.57 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.04 Total: 8.56 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -1.92 Total: -1.42 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.36 Total: -38.11 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.65 Total: -24.28 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.16 Total: 15.87 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -1.50 Total: -3.66 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.14 -7.43 -37.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496777597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.214 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds