Wall clock time and date at job start Sat Apr 11 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45203 * 109.47197 * 2 1 4 4 C 1.34634 * 116.99949 * 180.02562 * 3 2 1 5 5 O 1.21514 * 120.00236 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00079 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00013 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46911 * 179.97438 * 7 6 4 9 9 C 1.50700 * 109.47142 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00128 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00243 * 180.02562 * 9 8 7 12 12 C 1.39141 * 120.00163 * 174.78164 * 11 9 8 13 13 C 1.38610 * 120.21143 * 33.99727 * 12 11 9 14 14 C 1.38194 * 120.17391 * 179.97438 * 13 12 11 15 15 C 1.39010 * 120.60084 * 0.02562 * 14 13 12 16 16 Cl 1.73600 * 119.78976 * 179.97438 * 15 14 13 17 17 C 1.37546 * 120.41697 * 359.73848 * 15 14 13 18 18 C 1.40735 * 119.81422 * 0.49322 * 17 15 14 19 19 C 1.41069 * 120.29186 * 179.78968 * 18 17 15 20 20 H 1.08000 * 119.99934 * 139.90751 * 19 18 17 21 21 C 1.39949 * 120.00123 * 320.17921 * 19 18 17 22 22 N 1.30853 * 120.00336 * 176.34857 * 21 19 18 23 23 Si 1.86803 * 119.99904 * 356.34232 * 21 19 18 24 24 H 1.48502 * 109.47143 * 90.09838 * 23 21 19 25 25 H 1.48496 * 109.47347 * 210.09697 * 23 21 19 26 26 H 1.48504 * 109.47208 * 330.10213 * 23 21 19 27 27 H 1.08999 * 109.47521 * 59.98905 * 1 2 3 28 28 H 1.09003 * 109.47442 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47189 * 299.99435 * 1 2 3 30 30 H 1.08998 * 109.46569 * 240.00868 * 2 1 3 31 31 H 1.08992 * 109.47441 * 120.00697 * 2 1 3 32 32 H 0.97004 * 119.99748 * 0.02562 * 6 4 3 33 33 H 1.08998 * 109.47393 * 59.99966 * 7 6 4 34 34 H 1.09006 * 109.47190 * 299.99513 * 7 6 4 35 35 H 1.09011 * 109.47307 * 59.99782 * 8 7 6 36 36 H 1.08997 * 109.47454 * 299.99734 * 8 7 6 37 37 H 0.97004 * 119.99548 * 354.77803 * 11 9 8 38 38 H 1.07997 * 119.91355 * 359.97438 * 13 12 11 39 39 H 1.07996 * 119.70168 * 180.02562 * 14 13 12 40 40 H 1.08005 * 120.09093 * 180.25286 * 17 15 14 41 41 H 0.96999 * 119.99969 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5454 -0.0005 5 8 4.0890 0.5817 -0.0005 6 7 3.8639 2.7908 0.0000 7 6 5.3163 2.9827 -0.0012 8 6 5.6329 4.4796 -0.0010 9 6 7.1269 4.6770 -0.0015 10 8 7.8657 3.7152 -0.0016 11 7 7.6421 5.9225 -0.0009 12 6 9.0169 6.1066 0.1082 13 6 9.8903 5.1923 -0.4597 14 6 11.2557 5.3763 -0.3514 15 6 11.7700 6.4757 0.3262 16 17 13.4888 6.6857 0.4501 17 6 10.9257 7.4007 0.8949 18 6 9.5323 7.2280 0.7994 19 6 8.6571 8.1682 1.3827 20 1 7.7571 8.4628 0.8635 21 6 8.9581 8.7234 2.6316 22 7 8.1841 9.6477 3.1404 23 14 10.4645 8.1446 3.5725 24 1 11.6331 8.9812 3.1988 25 1 10.2144 8.2671 5.0311 26 1 10.7437 6.7255 3.2355 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.8932 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 3.2730 3.5601 0.0011 33 1 5.7430 2.5216 -0.8919 34 1 5.7446 2.5203 0.8881 35 1 5.2060 4.9412 0.8896 36 1 5.2047 4.9417 -0.8904 37 1 7.0543 6.6905 -0.0766 38 1 9.5028 4.3340 -0.9883 39 1 11.9292 4.6594 -0.7971 40 1 11.3311 8.2551 1.4166 41 1 8.3930 10.0327 4.0059 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496777597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:58 Heat of formation + Delta-G solvation = -134.324602 kcal Electronic energy + Delta-G solvation = -26005.025014 eV Core-core repulsion = 21909.447885 eV Total energy + Delta-G solvation = -4095.577129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61779 -41.29775 -39.45852 -38.05380 -37.37765 -36.33447 -35.46479 -35.41521 -32.91769 -32.44204 -31.88070 -30.03449 -27.19645 -25.71494 -24.14178 -23.63615 -22.45289 -22.33608 -21.23700 -19.90672 -19.47263 -18.60336 -18.27650 -17.84497 -17.55869 -17.17047 -16.83645 -16.22090 -16.00155 -15.71067 -15.41793 -15.27912 -14.91953 -14.76042 -14.54346 -14.33459 -14.29471 -13.68546 -13.53328 -13.33388 -13.01929 -12.97944 -12.93348 -12.83539 -12.51496 -12.51180 -12.32491 -12.13814 -11.86547 -11.84384 -11.59792 -11.53577 -11.24096 -10.94303 -10.58823 -10.32891 -9.59376 -8.90734 -8.80700 -6.51402 0.39665 0.65196 1.04210 1.25271 1.32001 1.34199 1.43845 1.67708 1.69191 2.08830 2.34300 2.59057 3.21489 3.25770 3.62366 3.95291 4.03647 4.07550 4.11682 4.15708 4.36774 4.37698 4.52747 4.67332 4.68491 4.73524 4.83101 4.91681 4.95074 4.98234 5.12677 5.20389 5.21479 5.39098 5.45781 5.46551 5.66430 5.75618 6.00735 6.23887 6.33187 6.46288 6.73788 6.79240 7.24575 7.31317 8.20927 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015803 B = 0.002323 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.405144 B =12050.331859 C =13306.737139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.072 3.928 3 O -0.369 6.369 4 C 0.643 3.357 5 O -0.611 6.611 6 N -0.691 5.691 7 C 0.159 3.841 8 C -0.135 4.135 9 C 0.508 3.492 10 O -0.570 6.570 11 N -0.638 5.638 12 C 0.056 3.944 13 C -0.085 4.085 14 C -0.193 4.193 15 C -0.012 4.012 16 Cl -0.093 7.093 17 C -0.218 4.218 18 C 0.073 3.927 19 C -0.465 4.465 20 H 0.088 0.912 21 C 0.062 3.938 22 N -0.848 5.848 23 Si 0.931 3.069 24 H -0.261 1.261 25 H -0.282 1.282 26 H -0.258 1.258 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.425 0.575 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.130 0.870 36 H 0.142 0.858 37 H 0.420 0.580 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.109 0.891 41 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.910 -9.397 -5.623 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.002 4.002 3 O -0.283 6.283 4 C 0.396 3.604 5 O -0.503 6.503 6 N -0.352 5.352 7 C 0.036 3.964 8 C -0.174 4.174 9 C 0.297 3.703 10 O -0.450 6.450 11 N -0.281 5.281 12 C -0.040 4.040 13 C -0.106 4.106 14 C -0.213 4.213 15 C -0.039 4.039 16 Cl -0.065 7.065 17 C -0.239 4.239 18 C 0.069 3.931 19 C -0.495 4.495 20 H 0.106 0.894 21 C -0.153 4.153 22 N -0.475 5.475 23 Si 0.757 3.243 24 H -0.187 1.187 25 H -0.209 1.209 26 H -0.182 1.182 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.263 0.737 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.148 0.852 36 H 0.160 0.840 37 H 0.258 0.742 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.127 0.873 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.126 -10.373 -5.407 16.849 hybrid contribution 0.649 0.718 0.719 1.206 sum -11.477 -9.656 -4.688 15.714 Atomic orbital electron populations 1.21844 0.89957 1.04543 1.03840 1.23248 0.96712 0.77677 1.02586 1.86252 1.20728 1.34658 1.86693 1.18282 0.81495 0.84506 0.76090 1.91004 1.60860 1.41198 1.57237 1.44441 1.08102 1.05383 1.77291 1.20830 0.77172 0.95555 1.02839 1.21704 0.90512 0.96515 1.08712 1.21044 0.91875 0.82068 0.75348 1.90685 1.62540 1.41015 1.50754 1.42925 1.05645 1.09104 1.70457 1.17917 0.83843 0.96822 1.05400 1.20981 0.92032 0.99125 0.98435 1.20617 0.95146 0.98851 1.06673 1.20790 0.82912 0.97706 1.02459 1.98281 1.13639 1.97288 1.97253 1.20953 0.93161 1.00937 1.08814 1.17596 0.91336 0.92403 0.91802 1.19097 1.07811 1.19870 1.02771 0.89425 1.26323 0.98222 0.92497 0.98248 1.69600 1.37528 1.21647 1.18747 0.85987 0.79940 0.81135 0.77231 1.18664 1.20903 1.18238 0.91048 0.87927 0.91198 0.91408 0.91612 0.73710 0.91521 0.92397 0.85213 0.84023 0.74206 0.84706 0.84881 0.87318 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 10.29 71.98 0.74 -0.54 16 2 C 0.07 1.14 6.19 71.98 0.45 1.59 16 3 O -0.37 -7.41 10.27 -55.43 -0.57 -7.98 16 4 C 0.64 15.86 8.75 129.79 1.14 16.99 16 5 O -0.61 -20.10 16.13 19.80 0.32 -19.79 16 6 N -0.69 -12.87 5.56 -590.85 -3.29 -16.16 16 7 C 0.16 3.56 4.96 86.38 0.43 3.99 16 8 C -0.13 -2.42 5.82 29.85 0.17 -2.24 16 9 C 0.51 15.22 7.68 87.66 0.67 15.89 16 10 O -0.57 -21.59 13.33 -3.04 -0.04 -21.63 16 11 N -0.64 -21.00 5.03 -302.30 -1.52 -22.51 16 12 C 0.06 2.28 6.35 38.86 0.25 2.53 16 13 C -0.09 -3.42 8.69 22.35 0.19 -3.22 16 14 C -0.19 -7.55 9.82 22.44 0.22 -7.33 16 15 C -0.01 -0.49 6.31 22.29 0.14 -0.35 16 16 Cl -0.09 -3.35 28.94 -2.72 -0.08 -3.43 16 17 C -0.22 -9.81 6.62 22.72 0.15 -9.66 16 18 C 0.07 3.31 5.01 -21.18 -0.11 3.21 16 19 C -0.46 -22.13 8.99 23.38 0.21 -21.92 16 20 H 0.09 4.15 7.34 -2.91 -0.02 4.13 16 21 C 0.06 3.01 5.51 85.25 0.47 3.48 16 22 N -0.85 -42.35 13.93 21.83 0.30 -42.05 16 23 Si 0.93 41.18 24.49 68.60 1.68 42.86 16 24 H -0.26 -11.22 6.79 99.48 0.68 -10.55 16 25 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 26 H -0.26 -12.03 6.54 99.48 0.65 -11.38 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.42 4.82 8.58 -92.71 -0.80 4.03 16 33 H 0.07 1.71 8.10 -2.39 -0.02 1.69 16 34 H 0.06 1.60 8.10 -2.38 -0.02 1.58 16 35 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.42 11.91 7.72 -92.71 -0.72 11.19 16 38 H 0.14 5.27 6.11 -2.91 -0.02 5.25 16 39 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 40 H 0.11 4.98 4.95 -2.91 -0.01 4.97 16 41 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 Total: -1.00 -65.76 363.34 1.43 -64.32 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -0.50 Total: 23.96 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 5.12 Total: 2.41 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -4.50 Total: -80.72 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -0.29 Total: -49.40 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 1.68 Total: 42.86 kcal Atomic # 17 Polarization: -3.35 SS G_CDS: -0.08 Total: -3.43 kcal Total: -65.76 1.43 -64.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496777597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.002 kcal (2) G-P(sol) polarization free energy of solvation -65.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds