Wall clock time and date at job start Sat Apr 11 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34638 * 116.99808 * 2 1 4 4 O 1.21509 * 120.00403 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00131 * 179.97438 * 3 2 1 6 6 C 1.46501 * 120.00247 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47146 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.46983 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47015 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00363 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99811 * 179.97438 * 9 8 7 12 12 C 1.39150 * 119.99628 * 175.54958 * 11 9 8 13 13 C 1.38607 * 120.21602 * 28.67944 * 12 11 9 14 14 C 1.38190 * 120.17572 * 179.97438 * 13 12 11 15 15 C 1.39006 * 120.59833 * 0.03023 * 14 13 12 16 16 Cl 1.73603 * 119.78422 * 179.97438 * 15 14 13 17 17 C 1.37543 * 120.42240 * 359.73449 * 15 14 13 18 18 C 1.40732 * 119.81031 * 0.49066 * 17 15 14 19 19 C 1.41077 * 120.28947 * 179.78700 * 18 17 15 20 20 H 1.08005 * 119.99506 * 207.50541 * 19 18 17 21 21 C 1.39947 * 120.00095 * 27.78520 * 19 18 17 22 22 N 1.30858 * 119.99597 * 12.24481 * 21 19 18 23 23 Si 1.86799 * 120.00199 * 192.24164 * 21 19 18 24 24 H 1.48499 * 109.46998 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47049 * 119.99892 * 23 21 19 26 26 H 1.48496 * 109.47417 * 240.00342 * 23 21 19 27 27 H 1.09002 * 109.47105 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47819 * 300.00211 * 1 2 3 29 29 H 1.08999 * 109.47089 * 60.00739 * 1 2 3 30 30 H 0.97005 * 119.99948 * 359.97438 * 5 3 2 31 31 H 1.09000 * 109.47114 * 59.99355 * 6 5 3 32 32 H 1.09001 * 109.47033 * 299.99781 * 6 5 3 33 33 H 1.09008 * 109.47181 * 60.00162 * 7 6 5 34 34 H 1.08992 * 109.47419 * 300.00256 * 7 6 5 35 35 H 1.08999 * 109.47417 * 60.00235 * 8 7 6 36 36 H 1.09001 * 109.47298 * 300.00210 * 8 7 6 37 37 H 0.96996 * 120.00060 * 355.54954 * 11 9 8 38 38 H 1.07998 * 119.90657 * 359.97438 * 13 12 11 39 39 H 1.07993 * 119.69637 * 180.02562 * 14 13 12 40 40 H 1.07999 * 120.09105 * 180.25927 * 17 15 14 41 41 H 0.97006 * 119.99709 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0631 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0741 2.5756 0.0000 7 6 5.5909 2.3752 0.0014 8 6 6.2855 3.7384 0.0001 9 6 7.7795 3.5410 0.0009 10 8 8.2432 2.4203 0.0028 11 7 8.6005 4.6099 -0.0005 12 6 9.9771 4.4300 0.0937 13 6 10.5637 3.2710 -0.3898 14 6 11.9310 3.0933 -0.2963 15 6 12.7335 4.0700 0.2820 16 17 14.4487 3.8246 0.3892 17 6 12.1778 5.2316 0.7654 18 6 10.7868 5.4287 0.6836 19 6 10.2056 6.6144 1.1802 20 1 9.1840 6.6093 1.5306 21 6 10.9510 7.7984 1.2135 22 7 12.0897 7.8727 0.5731 23 14 10.3204 9.2725 2.1721 24 1 9.0190 8.9334 2.8019 25 1 11.3018 9.6340 3.2262 26 1 10.1387 10.4219 1.2496 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 3.9374 0.4567 0.0013 31 1 3.7808 3.1332 0.8894 32 1 3.7817 3.1320 -0.8905 33 1 5.8846 1.8174 -0.8880 34 1 5.8831 1.8189 0.8920 35 1 5.9920 4.2966 0.8892 36 1 5.9932 4.2943 -0.8908 37 1 8.2317 5.5046 -0.0672 38 1 9.9506 2.5048 -0.8407 39 1 12.3800 2.1875 -0.6758 40 1 12.8068 5.9887 1.2099 41 1 12.6066 8.6933 0.5965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496901258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:02 Heat of formation + Delta-G solvation = -116.750497 kcal Electronic energy + Delta-G solvation = -25722.329064 eV Core-core repulsion = 21627.514005 eV Total energy + Delta-G solvation = -4094.815059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.65624 -39.79235 -37.64614 -37.13899 -35.71458 -35.44246 -33.89695 -33.63439 -32.87098 -29.85460 -28.94969 -28.00502 -26.53045 -25.35796 -22.76989 -21.63990 -21.59253 -20.74357 -19.52830 -18.87375 -17.63688 -17.28216 -16.91338 -16.77836 -16.23393 -15.91827 -15.43275 -15.01358 -14.66322 -14.54500 -14.32649 -13.75251 -13.62481 -13.28993 -12.98789 -12.70130 -12.50821 -12.37938 -12.18566 -12.11050 -11.72747 -11.64055 -11.51902 -11.29376 -11.11621 -11.01831 -10.91517 -10.88544 -10.54710 -10.47362 -10.29800 -9.71470 -9.48749 -9.40847 -9.27267 -8.85689 -7.62298 -7.09849 -6.80345 -4.58822 1.91451 2.35238 2.55678 2.68692 2.97327 3.00582 3.04536 3.22758 3.30878 3.73596 3.77614 4.02804 4.42536 4.69336 4.81934 4.82101 4.87191 4.89846 5.15247 5.29893 5.32169 5.40008 5.43348 5.57843 5.88047 5.93674 6.07679 6.11030 6.26152 6.35014 6.70303 6.78316 6.96855 6.98171 7.10537 7.28606 7.47276 7.67265 7.75914 7.87977 8.04695 8.19418 8.32026 8.58890 8.64217 8.84262 10.00414 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013055 B = 0.002209 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.264255 B =12672.816949 C =14666.451965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.374 6.374 3 C 0.645 3.355 4 O -0.574 6.574 5 N -0.707 5.707 6 C 0.135 3.865 7 C -0.115 4.115 8 C -0.136 4.136 9 C 0.498 3.502 10 O -0.540 6.540 11 N -0.636 5.636 12 C 0.020 3.980 13 C -0.085 4.085 14 C -0.216 4.216 15 C -0.015 4.015 16 Cl -0.125 7.125 17 C -0.140 4.140 18 C 0.107 3.893 19 C -0.462 4.462 20 H 0.081 0.919 21 C 0.075 3.925 22 N -0.788 5.788 23 Si 0.912 3.088 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.273 1.273 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.409 0.591 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.406 0.594 38 H 0.129 0.871 39 H 0.102 0.898 40 H 0.135 0.865 41 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.678 -7.224 -1.020 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.288 6.288 3 C 0.397 3.603 4 O -0.463 6.463 5 N -0.366 5.366 6 C 0.013 3.987 7 C -0.153 4.153 8 C -0.176 4.176 9 C 0.285 3.715 10 O -0.419 6.419 11 N -0.278 5.278 12 C -0.074 4.074 13 C -0.105 4.105 14 C -0.237 4.237 15 C -0.042 4.042 16 Cl -0.096 7.096 17 C -0.161 4.161 18 C 0.102 3.898 19 C -0.492 4.492 20 H 0.099 0.901 21 C -0.144 4.144 22 N -0.413 5.413 23 Si 0.736 3.264 24 H -0.184 1.184 25 H -0.196 1.196 26 H -0.199 1.199 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.245 0.755 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.242 0.758 38 H 0.147 0.853 39 H 0.120 0.880 40 H 0.152 0.848 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.457 -7.366 -1.058 16.259 hybrid contribution -0.038 0.941 0.382 1.016 sum -14.495 -6.425 -0.676 15.869 Atomic orbital electron populations 1.23190 0.74351 1.03464 1.02766 1.86244 1.24271 1.31172 1.87118 1.18165 0.83526 0.82163 0.76448 1.91008 1.64684 1.34894 1.55703 1.44693 1.02939 1.11050 1.77937 1.21452 0.91706 0.82549 1.03038 1.21505 0.91528 0.97493 1.04824 1.21500 0.92495 0.98764 1.04885 1.20501 0.88643 0.84991 0.77363 1.90616 1.77233 1.24045 1.50026 1.42924 1.05564 1.09351 1.69959 1.17813 0.81915 0.99573 1.08081 1.20812 0.93453 0.97076 0.99205 1.20200 0.92989 0.99618 1.10898 1.20792 0.81334 0.97358 1.04698 1.98255 1.16849 1.97087 1.97438 1.21096 0.95286 0.95454 1.04271 1.17276 0.90780 0.91967 0.89743 1.19343 0.99909 0.92513 1.37414 0.90134 1.25911 0.94332 1.00587 0.93555 1.69793 1.11843 1.28476 1.31158 0.86195 0.80104 0.80192 0.79916 1.18382 1.19613 1.19867 0.87970 0.91825 0.91842 0.75539 0.90857 0.90881 0.90129 0.90067 0.88505 0.88671 0.75821 0.85341 0.87995 0.84752 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -3.64 10.62 -40.32 -0.43 -4.07 16 3 C 0.64 7.38 8.75 54.06 0.47 7.85 16 4 O -0.57 -8.28 16.13 -19.28 -0.31 -8.59 16 5 N -0.71 -6.56 5.56 -65.28 -0.36 -6.92 16 6 C 0.13 1.21 5.67 -4.04 -0.02 1.18 16 7 C -0.12 -1.10 4.62 -26.73 -0.12 -1.23 16 8 C -0.14 -1.43 5.70 -27.88 -0.16 -1.59 16 9 C 0.50 8.04 7.70 -10.98 -0.08 7.96 16 10 O -0.54 -10.46 13.04 5.56 0.07 -10.38 16 11 N -0.64 -11.50 5.03 -9.48 -0.05 -11.54 16 12 C 0.02 0.46 6.44 -83.18 -0.54 -0.08 16 13 C -0.09 -1.91 8.74 -39.46 -0.34 -2.26 16 14 C -0.22 -4.85 9.82 -39.31 -0.39 -5.24 16 15 C -0.02 -0.35 6.31 -39.55 -0.25 -0.60 16 16 Cl -0.12 -2.54 28.94 -51.86 -1.50 -4.04 16 17 C -0.14 -3.46 8.42 -38.89 -0.33 -3.79 16 18 C 0.11 2.58 5.57 -106.65 -0.59 1.98 16 19 C -0.46 -10.71 8.35 -37.87 -0.32 -11.03 16 20 H 0.08 1.73 7.26 -52.48 -0.38 1.35 16 21 C 0.07 1.70 5.23 -17.33 -0.09 1.61 16 22 N -0.79 -18.78 10.85 55.55 0.60 -18.18 16 23 Si 0.91 17.00 29.58 -169.99 -5.03 11.97 16 24 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 25 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 26 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 27 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.41 3.02 8.58 -40.82 -0.35 2.66 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.81 8.10 -51.92 -0.42 0.39 16 34 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.41 6.49 7.72 -40.82 -0.32 6.17 16 38 H 0.13 2.83 5.72 -52.49 -0.30 2.53 16 39 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 40 H 0.13 3.45 6.20 -52.49 -0.33 3.12 16 41 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -30.05 367.96 -8.18 -38.24 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.69 Total: -3.77 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.19 Total: -36.64 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.67 Total: -23.04 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Atomic # 17 Polarization: -2.54 SS G_CDS: -1.50 Total: -4.04 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.05 -8.18 -38.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496901258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.515 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds