Wall clock time and date at job start Sat Apr 11 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34638 * 116.99808 * 2 1 4 4 O 1.21509 * 120.00403 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00131 * 179.97438 * 3 2 1 6 6 C 1.46501 * 120.00247 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47146 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.46983 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47015 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00363 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99811 * 179.97438 * 9 8 7 12 12 C 1.39150 * 119.99628 * 175.54958 * 11 9 8 13 13 C 1.38607 * 120.21602 * 28.67944 * 12 11 9 14 14 C 1.38190 * 120.17572 * 179.97438 * 13 12 11 15 15 C 1.39006 * 120.59833 * 0.03023 * 14 13 12 16 16 Cl 1.73603 * 119.78422 * 179.97438 * 15 14 13 17 17 C 1.37543 * 120.42240 * 359.73449 * 15 14 13 18 18 C 1.40732 * 119.81031 * 0.49066 * 17 15 14 19 19 C 1.41077 * 120.28947 * 179.78700 * 18 17 15 20 20 H 1.08005 * 119.99506 * 207.50541 * 19 18 17 21 21 C 1.39947 * 120.00095 * 27.78520 * 19 18 17 22 22 N 1.30858 * 119.99597 * 12.24481 * 21 19 18 23 23 Si 1.86799 * 120.00199 * 192.24164 * 21 19 18 24 24 H 1.48499 * 109.46998 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47049 * 119.99892 * 23 21 19 26 26 H 1.48496 * 109.47417 * 240.00342 * 23 21 19 27 27 H 1.09002 * 109.47105 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47819 * 300.00211 * 1 2 3 29 29 H 1.08999 * 109.47089 * 60.00739 * 1 2 3 30 30 H 0.97005 * 119.99948 * 359.97438 * 5 3 2 31 31 H 1.09000 * 109.47114 * 59.99355 * 6 5 3 32 32 H 1.09001 * 109.47033 * 299.99781 * 6 5 3 33 33 H 1.09008 * 109.47181 * 60.00162 * 7 6 5 34 34 H 1.08992 * 109.47419 * 300.00256 * 7 6 5 35 35 H 1.08999 * 109.47417 * 60.00235 * 8 7 6 36 36 H 1.09001 * 109.47298 * 300.00210 * 8 7 6 37 37 H 0.96996 * 120.00060 * 355.54954 * 11 9 8 38 38 H 1.07998 * 119.90657 * 359.97438 * 13 12 11 39 39 H 1.07993 * 119.69637 * 180.02562 * 14 13 12 40 40 H 1.07999 * 120.09105 * 180.25927 * 17 15 14 41 41 H 0.97006 * 119.99709 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0631 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0741 2.5756 0.0000 7 6 5.5909 2.3752 0.0014 8 6 6.2855 3.7384 0.0001 9 6 7.7795 3.5410 0.0009 10 8 8.2432 2.4203 0.0028 11 7 8.6005 4.6099 -0.0005 12 6 9.9771 4.4300 0.0937 13 6 10.5637 3.2710 -0.3898 14 6 11.9310 3.0933 -0.2963 15 6 12.7335 4.0700 0.2820 16 17 14.4487 3.8246 0.3892 17 6 12.1778 5.2316 0.7654 18 6 10.7868 5.4287 0.6836 19 6 10.2056 6.6144 1.1802 20 1 9.1840 6.6093 1.5306 21 6 10.9510 7.7984 1.2135 22 7 12.0897 7.8727 0.5731 23 14 10.3204 9.2725 2.1721 24 1 9.0190 8.9334 2.8019 25 1 11.3018 9.6340 3.2262 26 1 10.1387 10.4219 1.2496 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 3.9374 0.4567 0.0013 31 1 3.7808 3.1332 0.8894 32 1 3.7817 3.1320 -0.8905 33 1 5.8846 1.8174 -0.8880 34 1 5.8831 1.8189 0.8920 35 1 5.9920 4.2966 0.8892 36 1 5.9932 4.2943 -0.8908 37 1 8.2317 5.5046 -0.0672 38 1 9.9506 2.5048 -0.8407 39 1 12.3800 2.1875 -0.6758 40 1 12.8068 5.9887 1.2099 41 1 12.6066 8.6933 0.5965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496901258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:02 Heat of formation + Delta-G solvation = -135.914656 kcal Electronic energy + Delta-G solvation = -25723.160084 eV Core-core repulsion = 21627.514005 eV Total energy + Delta-G solvation = -4095.646079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.48429 -41.20752 -39.18225 -37.99053 -37.19199 -36.55184 -35.55002 -35.22120 -33.78693 -31.61314 -30.35277 -28.89055 -27.59046 -26.90829 -23.96655 -23.15130 -22.38611 -22.20194 -20.93240 -19.66635 -19.32447 -18.46777 -17.93463 -17.69015 -17.65583 -17.10682 -16.76983 -16.31515 -15.93254 -15.68711 -15.19552 -15.01137 -14.85455 -14.54509 -14.37694 -14.25049 -13.98176 -13.44066 -13.24126 -13.20246 -13.07528 -12.94968 -12.83213 -12.51842 -12.46728 -12.21451 -12.12328 -11.91345 -11.84935 -11.80203 -11.78570 -11.40571 -11.08629 -10.80849 -10.39165 -10.25644 -9.42460 -8.80339 -8.49667 -6.35948 0.67346 0.96026 1.20380 1.45203 1.51456 1.56512 1.58551 1.70115 1.85383 2.21707 2.49030 2.71542 3.32551 3.59869 3.73553 4.03506 4.06349 4.30826 4.35900 4.37949 4.53635 4.57984 4.59647 4.64740 4.73321 4.78266 5.00276 5.04297 5.11764 5.16162 5.26388 5.28033 5.35045 5.39272 5.55500 5.74177 5.90817 6.02126 6.15787 6.34682 6.50352 6.73795 6.86767 6.96915 7.25436 7.45217 8.33137 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013055 B = 0.002209 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.264255 B =12672.816949 C =14666.451965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.377 6.377 3 C 0.641 3.359 4 O -0.608 6.608 5 N -0.699 5.699 6 C 0.141 3.859 7 C -0.104 4.104 8 C -0.125 4.125 9 C 0.496 3.504 10 O -0.573 6.573 11 N -0.638 5.638 12 C 0.023 3.977 13 C -0.097 4.097 14 C -0.221 4.221 15 C -0.026 4.026 16 Cl -0.106 7.106 17 C -0.164 4.164 18 C 0.080 3.920 19 C -0.477 4.477 20 H 0.094 0.906 21 C 0.036 3.964 22 N -0.822 5.822 23 Si 0.983 3.017 24 H -0.250 1.250 25 H -0.275 1.275 26 H -0.269 1.269 27 H 0.135 0.865 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.419 0.581 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.416 0.584 38 H 0.133 0.867 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.597 -7.089 -0.822 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.291 6.291 3 C 0.394 3.606 4 O -0.500 6.500 5 N -0.359 5.359 6 C 0.019 3.981 7 C -0.143 4.143 8 C -0.165 4.165 9 C 0.286 3.714 10 O -0.453 6.453 11 N -0.281 5.281 12 C -0.073 4.073 13 C -0.117 4.117 14 C -0.242 4.242 15 C -0.053 4.053 16 Cl -0.078 7.078 17 C -0.185 4.185 18 C 0.075 3.925 19 C -0.507 4.507 20 H 0.112 0.888 21 C -0.180 4.180 22 N -0.447 5.447 23 Si 0.804 3.196 24 H -0.173 1.173 25 H -0.200 1.200 26 H -0.194 1.194 27 H 0.153 0.847 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.255 0.745 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.254 0.746 38 H 0.150 0.850 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.390 -7.260 -0.868 17.947 hybrid contribution 0.560 0.785 0.287 1.006 sum -15.831 -6.475 -0.581 17.113 Atomic orbital electron populations 1.23492 0.72790 1.05604 1.02589 1.86257 1.25849 1.30198 1.86772 1.18355 0.83931 0.82186 0.76130 1.90980 1.65513 1.36054 1.57448 1.44691 1.02468 1.11711 1.77010 1.21382 0.90937 0.82469 1.03350 1.21374 0.91775 0.96838 1.04272 1.21534 0.87732 0.99907 1.07338 1.21490 0.90661 0.83822 0.75403 1.90596 1.78336 1.25299 1.51112 1.43003 1.04115 1.10632 1.70368 1.17948 0.83967 0.98769 1.06594 1.20981 0.93661 0.97436 0.99669 1.20429 0.93188 0.99971 1.10575 1.20892 0.82584 0.97174 1.04681 1.98245 1.15145 1.96984 1.97378 1.21051 0.95796 0.95840 1.05793 1.17619 0.91073 0.93133 0.90628 1.19623 1.00689 0.92608 1.37736 0.88826 1.26748 0.94253 1.03123 0.93870 1.69871 1.13093 1.29487 1.32288 0.85125 0.79630 0.76613 0.78234 1.17281 1.20028 1.19363 0.84700 0.92061 0.92024 0.74451 0.90686 0.90447 0.90538 0.90894 0.86243 0.85821 0.74647 0.84971 0.86471 0.86497 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 10.56 113.37 1.20 1.78 16 2 O -0.38 -6.82 10.62 -55.47 -0.59 -7.41 16 3 C 0.64 13.88 8.75 129.79 1.14 15.02 16 4 O -0.61 -16.98 16.13 19.81 0.32 -16.66 16 5 N -0.70 -11.79 5.56 -590.85 -3.29 -15.08 16 6 C 0.14 2.20 5.67 86.38 0.49 2.69 16 7 C -0.10 -1.76 4.62 30.59 0.14 -1.62 16 8 C -0.13 -2.26 5.70 29.85 0.17 -2.09 16 9 C 0.50 15.25 7.70 87.66 0.67 15.93 16 10 O -0.57 -21.69 13.04 -3.04 -0.04 -21.73 16 11 N -0.64 -22.37 5.03 -302.29 -1.52 -23.89 16 12 C 0.02 1.01 6.44 38.86 0.25 1.26 16 13 C -0.10 -4.37 8.74 22.35 0.20 -4.18 16 14 C -0.22 -9.95 9.82 22.44 0.22 -9.73 16 15 C -0.03 -1.24 6.31 22.29 0.14 -1.10 16 16 Cl -0.11 -4.33 28.94 -2.72 -0.08 -4.41 16 17 C -0.16 -8.28 8.42 22.72 0.19 -8.09 16 18 C 0.08 3.91 5.57 -21.18 -0.12 3.79 16 19 C -0.48 -22.05 8.35 23.38 0.20 -21.85 16 20 H 0.09 3.92 7.26 -2.91 -0.02 3.90 16 21 C 0.04 1.61 5.23 85.25 0.45 2.06 16 22 N -0.82 -39.75 10.85 21.83 0.24 -39.51 16 23 Si 0.98 34.19 29.58 68.60 2.03 36.22 16 24 H -0.25 -8.19 7.11 99.48 0.71 -7.48 16 25 H -0.27 -9.67 7.11 99.48 0.71 -8.97 16 26 H -0.27 -9.08 7.11 99.48 0.71 -8.37 16 27 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.42 5.47 8.58 -92.70 -0.80 4.67 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.38 8.10 -2.38 -0.02 1.36 16 34 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 35 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.42 12.65 7.72 -92.71 -0.72 11.94 16 38 H 0.13 5.81 5.72 -2.91 -0.02 5.80 16 39 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 40 H 0.12 6.23 6.20 -2.91 -0.02 6.21 16 41 H 0.29 12.76 8.30 -92.70 -0.77 11.99 16 Total: -1.00 -65.65 367.96 1.99 -63.66 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: -0.41 Total: 34.96 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 5.33 Total: -6.14 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -4.57 Total: -78.48 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -0.31 Total: -45.81 kcal Atomic # 14 Polarization: 34.19 SS G_CDS: 2.03 Total: 36.22 kcal Atomic # 17 Polarization: -4.33 SS G_CDS: -0.08 Total: -4.41 kcal Total: -65.65 1.99 -63.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496901258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.255 kcal (2) G-P(sol) polarization free energy of solvation -65.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds