Wall clock time and date at job start Sat Apr 11 2020 05:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00535 * 2 1 4 4 H 1.48491 * 109.47075 * 240.00085 * 3 2 1 5 5 H 1.48501 * 109.46551 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47017 * 119.99659 * 3 2 1 7 7 C 1.37879 * 119.99578 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99765 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00060 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47036 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00390 * 98.21768 * 10 9 7 12 12 O 1.21722 * 120.00108 * 183.80819 * 11 10 9 13 13 C 1.46648 * 120.00010 * 3.80624 * 11 10 9 14 14 C 1.40339 * 126.56389 * 334.05368 * 13 11 10 15 15 N 1.30997 * 108.78402 * 180.02562 * 14 13 11 16 16 N 1.39901 * 109.56165 * 0.02562 * 15 14 13 17 17 N 1.40015 * 132.52027 * 180.02562 * 16 15 14 18 18 C 1.30835 * 120.66096 * 179.97438 * 17 16 15 19 19 C 1.39732 * 120.97140 * 0.27329 * 18 17 16 20 20 C 1.36562 * 119.94196 * 359.42740 * 19 18 17 21 21 C 1.36768 * 107.87206 * 359.97438 * 16 15 14 22 22 C 1.39976 * 119.99825 * 278.21539 * 10 9 7 23 23 C 1.38868 * 120.04523 * 60.46435 * 22 10 9 24 24 C 1.38106 * 119.95334 * 179.79126 * 23 22 10 25 25 C 1.38480 * 120.04702 * 0.46706 * 24 23 22 26 26 F 1.35097 * 119.95694 * 179.76620 * 25 24 23 27 27 C 1.38478 * 120.09159 * 359.78630 * 25 24 23 28 28 C 1.38115 * 120.04531 * 359.97438 * 27 25 24 29 29 H 0.97005 * 119.99390 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47247 * 59.99848 * 9 7 2 31 31 H 1.09005 * 109.46906 * 299.99585 * 9 7 2 32 32 H 1.08001 * 125.60960 * 0.03858 * 14 13 11 33 33 H 1.07998 * 119.51422 * 179.97438 * 18 17 16 34 34 H 1.08001 * 120.02948 * 179.72936 * 19 18 17 35 35 H 1.08002 * 120.44189 * 180.29954 * 20 19 18 36 36 H 1.08003 * 120.02421 * 0.02562 * 23 22 10 37 37 H 1.07997 * 119.98010 * 180.22873 * 24 23 22 38 38 H 1.08002 * 119.97577 * 179.97438 * 27 25 24 39 39 H 1.07995 * 120.02053 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0018 11 6 2.5131 -4.2329 1.1574 12 8 3.3552 -5.1117 1.1696 13 6 1.8360 -3.8490 2.4003 14 6 1.2604 -2.6018 2.6879 15 7 0.7523 -2.6399 3.8947 16 7 0.9683 -3.9039 4.4542 17 7 0.6326 -4.4596 5.6947 18 6 0.9554 -5.6945 5.9819 19 6 1.6470 -6.4891 5.0638 20 6 1.9851 -5.9816 3.8419 21 6 1.6399 -4.6609 3.5341 22 6 2.7902 -4.0327 -1.1974 23 6 3.5676 -3.1511 -1.9369 24 6 4.1497 -3.5687 -3.1176 25 6 3.9508 -4.8627 -3.5691 26 9 4.5173 -5.2678 -4.7267 27 6 3.1716 -5.7418 -2.8358 28 6 2.5917 -5.3296 -1.6520 29 1 -0.4849 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6239 -2.5567 0.8904 32 1 1.2396 -1.7506 2.0235 33 1 0.6876 -6.1043 6.9446 34 1 1.9097 -7.5053 5.3185 35 1 2.5154 -6.5902 3.1243 36 1 3.7199 -2.1407 -1.5871 37 1 4.7574 -2.8846 -3.6912 38 1 3.0174 -6.7504 -3.1899 39 1 1.9838 -6.0154 -1.0807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579790544.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:25 Heat of formation + Delta-G solvation = 93.756765 kcal Electronic energy + Delta-G solvation = -28719.679724 eV Core-core repulsion = 24545.258240 eV Total energy + Delta-G solvation = -4174.421484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.84271 -42.98832 -41.27479 -39.30736 -38.72090 -36.79041 -34.63948 -34.24844 -32.35757 -32.12892 -31.33278 -29.95426 -29.00516 -25.75588 -25.27959 -24.97197 -23.97770 -23.55319 -22.68407 -20.66535 -19.27315 -18.92375 -18.44663 -18.26918 -17.92423 -17.63767 -17.06874 -16.89930 -16.80138 -16.51855 -16.24561 -15.62334 -15.57973 -15.29239 -14.85775 -14.53070 -14.47632 -14.22384 -14.14369 -13.85410 -13.64987 -13.55651 -13.27324 -12.98394 -12.82457 -12.56352 -12.37033 -12.25235 -12.06579 -11.91298 -11.59721 -11.47765 -11.00524 -10.77722 -10.52624 -10.20982 -10.05275 -9.30399 -9.09663 -8.23884 -6.39372 -0.76328 -0.02229 0.11487 0.30120 0.38434 1.02822 1.44105 1.46385 1.52426 1.93037 2.07908 2.29939 2.42983 2.63930 3.06304 3.19368 3.29636 3.36359 3.55926 3.64423 3.84128 3.94455 3.98796 4.11379 4.28745 4.31822 4.39676 4.45879 4.50765 4.84638 4.91396 4.93681 4.97867 5.12272 5.13287 5.20347 5.23210 5.28332 5.50770 5.64012 5.69890 5.95421 6.03557 6.23924 6.40846 6.42304 6.72268 7.19854 7.33362 8.80700 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.008492 B = 0.004866 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3296.424649 B = 5752.475800 C = 8640.117634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.033 3.967 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.233 3.767 10 N -0.552 5.552 11 C 0.602 3.398 12 O -0.573 6.573 13 C -0.298 4.298 14 C 0.100 3.900 15 N -0.303 5.303 16 N -0.189 5.189 17 N -0.258 5.258 18 C 0.130 3.870 19 C -0.114 4.114 20 C -0.061 4.061 21 C 0.101 3.899 22 C 0.131 3.869 23 C -0.099 4.099 24 C -0.141 4.141 25 C 0.080 3.920 26 F -0.141 7.141 27 C -0.135 4.135 28 C -0.094 4.094 29 H 0.271 0.729 30 H 0.018 0.982 31 H 0.054 0.946 32 H 0.228 0.772 33 H 0.267 0.733 34 H 0.218 0.782 35 H 0.171 0.829 36 H 0.136 0.864 37 H 0.156 0.844 38 H 0.165 0.835 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.474 -15.259 5.451 16.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.170 4.170 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.114 3.886 10 N -0.277 5.277 11 C 0.394 3.606 12 O -0.455 6.455 13 C -0.314 4.314 14 C -0.079 4.079 15 N -0.128 5.128 16 N -0.053 5.053 17 N -0.071 5.071 18 C -0.061 4.061 19 C -0.139 4.139 20 C -0.088 4.088 21 C -0.027 4.027 22 C 0.040 3.960 23 C -0.119 4.119 24 C -0.160 4.160 25 C 0.060 3.940 26 F -0.120 7.120 27 C -0.154 4.154 28 C -0.114 4.114 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.243 0.757 33 H 0.282 0.718 34 H 0.235 0.765 35 H 0.188 0.812 36 H 0.153 0.847 37 H 0.174 0.826 38 H 0.182 0.818 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.570 -13.998 6.777 15.763 hybrid contribution 0.943 0.593 -1.460 1.837 sum 3.513 -13.405 5.317 14.843 Atomic orbital electron populations 1.70000 1.07138 1.28579 1.49001 1.25575 0.95435 1.01972 0.93987 0.85728 0.78602 0.79166 0.79079 1.19085 1.20881 1.19919 1.21547 0.93661 0.90656 1.52729 0.91769 1.19820 0.87579 0.82674 0.98557 1.45556 1.43367 1.34412 1.04376 1.17033 0.80826 0.80480 0.82293 1.90677 1.34136 1.33866 1.86839 1.19717 1.18364 0.96166 0.97160 1.25602 0.90871 0.99471 0.91952 1.77687 1.28595 0.95040 1.11447 1.51221 1.35960 1.09096 1.09066 1.75874 1.20235 1.16114 0.94897 1.25461 0.90830 0.86975 1.02816 1.22382 0.96110 1.04344 0.91022 1.21338 0.97486 0.90213 0.99805 1.20128 0.96941 0.95047 0.90553 1.17947 0.96074 0.94167 0.87790 1.21413 0.94797 1.00810 0.94881 1.21174 1.02382 0.95291 0.97168 1.17720 0.98226 0.93968 0.84049 1.91469 1.83281 1.90966 1.46283 1.21125 0.98443 1.01129 0.94699 1.21087 0.99651 0.94949 0.95699 0.92014 0.96389 0.92872 0.75681 0.71782 0.76529 0.81195 0.84651 0.82623 0.81773 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.58 13.29 21.45 0.28 -48.29 16 2 C 0.03 1.65 5.26 84.65 0.45 2.10 16 3 Si 0.95 40.74 29.54 68.60 2.03 42.77 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -27.14 6.68 25.60 0.17 -26.97 16 8 H 0.06 3.19 6.62 -2.91 -0.02 3.17 16 9 C 0.23 11.13 4.62 85.63 0.40 11.53 16 10 N -0.55 -23.97 2.59 -639.68 -1.66 -25.62 16 11 C 0.60 26.06 7.43 86.44 0.64 26.70 16 12 O -0.57 -25.05 15.79 -4.42 -0.07 -25.12 16 13 C -0.30 -12.59 5.75 -19.94 -0.11 -12.71 16 14 C 0.10 4.54 9.56 85.33 0.82 5.36 16 15 N -0.30 -13.50 12.61 -56.63 -0.71 -14.22 16 16 N -0.19 -7.08 5.25 -51.28 -0.27 -7.35 16 17 N -0.26 -7.22 11.96 -57.12 -0.68 -7.91 16 18 C 0.13 1.79 11.28 85.20 0.96 2.75 16 19 C -0.11 -1.41 10.04 22.24 0.22 -1.18 16 20 C -0.06 -1.46 9.85 22.29 0.22 -1.24 16 21 C 0.10 3.61 6.82 39.42 0.27 3.87 16 22 C 0.13 5.19 5.02 38.14 0.19 5.38 16 23 C -0.10 -3.71 9.47 22.39 0.21 -3.50 16 24 C -0.14 -4.37 10.02 22.30 0.22 -4.15 16 25 C 0.08 2.35 7.30 22.38 0.16 2.51 16 26 F -0.14 -3.93 17.26 44.97 0.78 -3.15 16 27 C -0.13 -3.81 10.02 22.30 0.22 -3.59 16 28 C -0.09 -3.16 9.13 22.39 0.20 -2.96 16 29 H 0.27 13.87 8.31 -92.70 -0.77 13.10 16 30 H 0.02 0.92 8.11 -2.39 -0.02 0.90 16 31 H 0.05 2.66 4.10 -2.38 -0.01 2.66 16 32 H 0.23 11.16 4.20 -2.91 -0.01 11.15 16 33 H 0.27 0.11 8.06 -2.91 -0.02 0.08 16 34 H 0.22 0.13 8.06 -2.91 -0.02 0.10 16 35 H 0.17 3.83 7.57 -2.91 -0.02 3.80 16 36 H 0.14 5.40 5.95 -2.91 -0.02 5.38 16 37 H 0.16 4.01 8.06 -2.91 -0.02 3.98 16 38 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 39 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -71.79 343.03 6.08 -65.71 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 1.13 Total: 19.26 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 5.25 Total: 3.92 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -3.04 Total: -103.39 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.07 Total: -25.12 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.15 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -71.79 6.08 -65.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579790544.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.466 kcal (2) G-P(sol) polarization free energy of solvation -71.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds