Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42907 * 109.47133 * 2 1 4 4 C 1.35517 * 117.00505 * 180.02562 * 3 2 1 5 5 N 1.32408 * 119.52915 * 359.97438 * 4 3 2 6 6 C 1.31650 * 121.81235 * 179.70429 * 5 4 3 7 7 C 1.39543 * 120.65058 * 0.58329 * 6 5 4 8 8 C 1.47627 * 120.49488 * 179.73202 * 7 6 5 9 9 O 1.21578 * 120.00013 * 25.74360 * 8 7 6 10 10 N 1.34773 * 119.99867 * 205.74376 * 8 7 6 11 11 C 1.47432 * 125.64761 * 356.36027 * 10 8 7 12 12 C 1.54913 * 104.83112 * 155.83597 * 11 10 8 13 13 C 1.55162 * 101.58068 * 37.00661 * 12 11 10 14 14 O 1.42901 * 110.71602 * 83.03925 * 13 12 11 15 15 C 1.50693 * 110.72123 * 206.13343 * 13 12 11 16 16 H 1.07997 * 120.00180 * 357.55860 * 15 13 12 17 17 C 1.37882 * 120.00057 * 177.28812 * 15 13 12 18 18 N 1.31518 * 119.99751 * 0.27738 * 17 15 13 19 19 Si 1.86794 * 119.99960 * 180.27583 * 17 15 13 20 20 H 1.48495 * 109.47358 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47092 * 120.00085 * 19 17 15 22 22 H 1.48505 * 109.47002 * 239.99590 * 19 17 15 23 23 C 1.47317 * 125.61598 * 176.50246 * 10 8 7 24 24 C 1.40248 * 119.01162 * 359.45272 * 7 6 5 25 25 C 1.38088 * 118.34429 * 0.25378 * 24 7 6 26 26 Cl 1.73599 * 120.37671 * 180.02562 * 25 24 7 27 27 H 1.08994 * 109.47393 * 299.99761 * 1 2 3 28 28 H 1.09001 * 109.47426 * 60.00331 * 1 2 3 29 29 H 1.09000 * 109.46533 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47341 * 240.00502 * 2 1 3 31 31 H 1.08993 * 109.47671 * 119.99952 * 2 1 3 32 32 H 1.08007 * 119.67415 * 180.31084 * 6 5 4 33 33 H 1.08999 * 110.36427 * 37.00305 * 11 10 8 34 34 H 1.08994 * 110.36644 * 274.67666 * 11 10 8 35 35 H 1.09001 * 111.00196 * 278.94038 * 12 11 10 36 36 H 1.08990 * 111.03527 * 155.09576 * 12 11 10 37 37 H 0.96695 * 114.00125 * 182.44323 * 14 13 12 38 38 H 0.97003 * 119.99876 * 180.02562 * 18 17 15 39 39 H 1.09000 * 110.06106 * 61.75122 * 23 10 8 40 40 H 1.08997 * 109.84731 * 300.49194 * 23 10 8 41 41 H 1.08003 * 120.82888 * 180.27940 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3498 1.5250 -0.0005 5 7 4.1478 0.4684 -0.0005 6 6 5.4588 0.5889 -0.0068 7 6 6.0574 1.8494 -0.0016 8 6 7.5278 1.9805 -0.0027 9 8 8.2169 1.0920 -0.4650 10 7 8.1063 3.0851 0.5088 11 6 7.3932 4.2657 1.0296 12 6 8.3861 4.9237 2.0200 13 6 9.7417 4.6940 1.3008 14 8 9.9679 5.7028 0.3143 15 6 10.8736 4.6599 2.2950 16 1 10.6766 4.8270 3.3436 17 6 12.1601 4.4098 1.8666 18 7 12.4001 4.2065 0.5895 19 14 13.5621 4.3599 3.0999 20 1 13.0319 4.6176 4.4628 21 1 14.2053 3.0218 3.0644 22 1 14.5638 5.3999 2.7530 23 6 9.5560 3.3132 0.6371 24 6 5.2412 2.9900 -0.0012 25 6 3.8714 2.8159 -0.0007 26 17 2.8117 4.1910 -0.0008 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 6.0771 -0.2967 -0.0117 33 1 6.4847 3.9614 1.5493 34 1 7.1549 4.9533 0.2182 35 1 8.3661 4.4194 2.9861 36 1 8.1790 5.9878 2.1326 37 1 10.7843 5.5838 -0.1899 38 1 13.3051 4.0302 0.2882 39 1 10.0237 3.3092 -0.3475 40 1 9.9986 2.5385 1.2632 41 1 5.6734 3.9798 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = -80.808925 kcal Electronic energy + Delta-G solvation = -27238.549062 eV Core-core repulsion = 23145.292547 eV Total energy + Delta-G solvation = -4093.256516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.12584 -39.60631 -38.16808 -37.22523 -36.73079 -34.58307 -32.74970 -32.34892 -32.25853 -30.49665 -29.88307 -27.99982 -25.60900 -24.90847 -23.93533 -22.89429 -22.26572 -19.98714 -19.49015 -18.82554 -17.57339 -17.23455 -16.85366 -16.69246 -15.70300 -15.46145 -15.17664 -15.01934 -14.43022 -14.35178 -14.30399 -14.09474 -13.33577 -13.16334 -13.01009 -12.94413 -12.86147 -12.71736 -12.22235 -12.10600 -11.94693 -11.65495 -11.55482 -11.30818 -11.11540 -11.05910 -10.86121 -10.77917 -10.52122 -10.28428 -10.24303 -9.93316 -9.51741 -9.39689 -8.73363 -8.69772 -8.39114 -8.04701 -6.34771 -4.43345 0.52420 0.74757 1.82784 2.56444 2.89012 3.16504 3.26052 3.29080 3.36448 3.62775 3.96766 4.22443 4.40442 4.57790 4.61100 4.68332 4.76032 4.92302 5.02071 5.05500 5.21385 5.26592 5.38588 5.49527 5.55400 5.66623 5.68315 5.73325 5.84987 5.92864 6.07336 6.38508 6.65565 6.74133 6.79227 6.82181 7.16879 7.28027 7.37998 7.67544 7.92133 8.01961 8.48934 8.60974 9.24126 9.33648 10.73099 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.022847 B = 0.002710 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.274376 B =10331.360991 C =10991.486768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.293 6.293 4 C 0.349 3.651 5 N -0.529 5.529 6 C 0.201 3.799 7 C -0.198 4.198 8 C 0.571 3.429 9 O -0.542 6.542 10 N -0.602 5.602 11 C 0.089 3.911 12 C -0.118 4.118 13 C 0.248 3.752 14 O -0.585 6.585 15 C -0.537 4.537 16 H 0.068 0.932 17 C 0.070 3.930 18 N -0.894 5.894 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.103 3.897 24 C -0.016 4.016 25 C -0.118 4.118 26 Cl -0.040 7.040 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.179 0.821 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.385 0.615 38 H 0.271 0.729 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.825 -4.467 -0.841 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.199 6.199 4 C 0.169 3.831 5 N -0.253 5.253 6 C 0.044 3.956 7 C -0.204 4.204 8 C 0.358 3.642 9 O -0.421 6.421 10 N -0.333 5.333 11 C -0.034 4.034 12 C -0.156 4.156 13 C 0.207 3.793 14 O -0.395 6.395 15 C -0.576 4.576 16 H 0.086 0.914 17 C -0.133 4.133 18 N -0.533 5.533 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.018 4.018 24 C -0.041 4.041 25 C -0.147 4.147 26 Cl -0.011 7.011 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.196 0.804 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.236 0.764 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -20.620 -5.323 -1.004 21.319 hybrid contribution 1.673 0.398 0.328 1.751 sum -18.946 -4.925 -0.676 19.588 Atomic orbital electron populations 1.21819 0.92729 1.02981 1.03478 1.22719 0.94967 0.80550 1.02941 1.86276 1.15884 1.31176 1.86594 1.19674 0.84919 0.88320 0.90217 1.67611 1.06353 1.30823 1.20533 1.22733 0.88400 0.97020 0.87466 1.20937 0.95393 0.94197 1.09843 1.17392 0.85830 0.81960 0.79039 1.90788 1.64048 1.40185 1.47071 1.48787 1.10170 1.15484 1.58905 1.22730 0.95962 0.87310 0.97365 1.22787 0.94829 1.00597 0.97354 1.19503 0.91317 0.82627 0.85823 1.86089 1.47634 1.52125 1.53610 1.21535 0.91706 1.49955 0.94372 0.91399 1.25081 0.99204 0.93339 0.95680 1.69646 1.21996 1.47786 1.13911 0.86338 0.81520 0.77815 0.81191 1.19575 1.20748 1.20708 1.23182 0.75831 1.00999 1.01793 1.22268 0.90117 1.01276 0.90457 1.20718 0.91848 0.87510 1.14645 1.98380 1.64932 1.40724 1.97104 0.91531 0.91541 0.90159 0.91224 0.91212 0.80366 0.91385 0.91034 0.90266 0.90191 0.76383 0.91936 0.91196 0.91145 0.81267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.56 16 2 C 0.06 0.55 6.02 37.16 0.22 0.77 16 3 O -0.29 -3.36 9.57 -18.24 -0.17 -3.54 16 4 C 0.35 4.45 7.49 -16.94 -0.13 4.33 16 5 N -0.53 -6.87 9.18 -12.94 -0.12 -6.99 16 6 C 0.20 2.73 10.75 -17.14 -0.18 2.54 16 7 C -0.20 -2.95 5.73 -104.82 -0.60 -3.55 16 8 C 0.57 10.71 7.66 -12.43 -0.10 10.61 16 9 O -0.54 -11.87 16.97 5.30 0.09 -11.78 16 10 N -0.60 -11.62 3.33 -171.47 -0.57 -12.19 16 11 C 0.09 1.45 5.02 -2.52 -0.01 1.43 16 12 C -0.12 -2.19 6.23 -24.58 -0.15 -2.35 16 13 C 0.25 5.69 0.85 -89.94 -0.08 5.61 16 14 O -0.59 -14.06 13.08 -35.23 -0.46 -14.52 16 15 C -0.54 -13.50 8.11 -34.44 -0.28 -13.78 16 16 H 0.07 1.68 7.77 -52.49 -0.41 1.28 16 17 C 0.07 1.78 5.27 -17.82 -0.09 1.68 16 18 N -0.89 -23.08 10.96 55.43 0.61 -22.47 16 19 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 C 0.10 2.36 5.39 -2.90 -0.02 2.35 16 24 C -0.02 -0.20 7.85 -38.88 -0.31 -0.51 16 25 C -0.12 -1.48 6.35 -39.27 -0.25 -1.73 16 26 Cl -0.04 -0.46 28.53 -51.86 -1.48 -1.94 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.18 2.22 7.86 -52.48 -0.41 1.80 16 33 H 0.07 0.92 6.09 -51.93 -0.32 0.61 16 34 H 0.07 1.10 7.33 -51.93 -0.38 0.72 16 35 H 0.08 1.42 8.03 -51.93 -0.42 1.01 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.38 9.57 7.24 45.56 0.33 9.90 16 38 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 39 H 0.07 1.76 8.00 -51.93 -0.42 1.34 16 40 H 0.07 1.76 7.81 -51.93 -0.41 1.35 16 41 H 0.17 2.10 4.57 -52.48 -0.24 1.86 16 LS Contribution 357.26 15.07 5.38 5.38 Total: -1.00 -28.31 357.26 -7.66 -35.97 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -4.33 Total: 10.30 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -1.59 Total: 6.85 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: -0.08 Total: -41.65 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.55 Total: -29.84 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.48 Total: -1.94 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.31 -7.66 -35.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.836 kcal (2) G-P(sol) polarization free energy of solvation -28.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds