Wall clock time and date at job start Sat Apr 11 2020 05:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99822 * 2 1 4 4 O 1.20830 * 120.00203 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00254 * 179.97438 * 3 2 1 6 6 C 1.52990 * 109.47307 * 180.02562 * 5 3 2 7 7 N 1.46505 * 109.47152 * 179.97438 * 6 5 3 8 8 C 1.37092 * 120.00010 * 270.00183 * 7 6 5 9 9 H 1.07999 * 119.99894 * 143.97780 * 8 7 6 10 10 C 1.38946 * 120.00245 * 323.97062 * 8 7 6 11 11 N 1.31415 * 120.00283 * 158.94702 * 10 8 7 12 12 Si 1.86805 * 119.99872 * 338.95227 * 10 8 7 13 13 H 1.48497 * 109.47257 * 95.20987 * 12 10 8 14 14 H 1.48504 * 109.46624 * 215.20742 * 12 10 8 15 15 H 1.48495 * 109.47165 * 335.20592 * 12 10 8 16 16 C 1.34777 * 119.99736 * 90.00052 * 7 6 5 17 17 O 1.21294 * 120.00352 * 354.80114 * 16 7 6 18 18 C 1.50699 * 120.00016 * 174.80379 * 16 7 6 19 19 C 1.53004 * 109.47171 * 184.36097 * 18 16 7 20 20 C 1.50704 * 109.47071 * 178.59183 * 19 18 16 21 21 C 1.38610 * 120.42052 * 95.29040 * 20 19 18 22 22 C 1.38668 * 118.43498 * 180.02562 * 21 20 19 23 23 C 1.38198 * 119.19091 * 0.02562 * 22 21 20 24 24 N 1.31876 * 120.77963 * 359.97438 * 23 22 21 25 25 C 1.31981 * 121.70714 * 359.97438 * 24 23 22 26 26 Cl 1.73599 * 119.63081 * 180.02562 * 25 24 23 27 27 H 1.09006 * 109.47320 * 60.00354 * 1 2 3 28 28 H 1.09003 * 109.46962 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47545 * 299.99933 * 1 2 3 30 30 H 1.08999 * 109.46639 * 59.99771 * 5 3 2 31 31 H 1.08998 * 109.46982 * 300.00163 * 5 3 2 32 32 H 1.08999 * 109.47533 * 60.00227 * 6 5 3 33 33 H 1.08998 * 109.47157 * 299.99963 * 6 5 3 34 34 H 0.96991 * 120.00116 * 180.02562 * 11 10 8 35 35 H 1.08991 * 109.47236 * 64.36060 * 18 16 7 36 36 H 1.09006 * 109.46724 * 304.35702 * 18 16 7 37 37 H 1.09004 * 109.46914 * 58.59389 * 19 18 16 38 38 H 1.08996 * 109.47140 * 298.58932 * 19 18 16 39 39 H 1.07997 * 120.78072 * 0.04848 * 21 20 19 40 40 H 1.07994 * 120.40784 * 180.02562 * 22 21 20 41 41 H 1.07994 * 119.60524 * 180.25777 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7421 0.0011 7 7 5.4630 2.8189 0.0023 8 6 6.1466 2.8546 1.1901 9 1 7.0992 2.3537 1.2802 10 6 5.6140 3.5353 2.2780 11 7 6.0179 3.2476 3.4950 12 14 4.3235 4.8593 2.0107 13 1 2.9698 4.2709 2.1728 14 1 4.5142 5.9443 3.0065 15 1 4.4610 5.4150 0.6406 16 6 6.1369 2.8543 -1.1644 17 8 5.5408 2.7278 -2.2132 18 6 7.6310 3.0510 -1.1659 19 6 8.1294 3.1615 -2.6083 20 6 9.6186 3.3928 -2.6089 21 6 10.4943 2.3272 -2.7463 22 6 11.8564 2.5870 -2.7407 23 6 12.2934 3.8904 -2.5989 24 7 11.4321 4.8807 -2.4703 25 6 10.1290 4.6714 -2.4722 26 17 9.0436 6.0152 -2.2998 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.9563 0.7807 -0.8891 31 1 3.9557 0.7811 0.8908 32 1 3.6100 3.2360 0.8910 33 1 3.6106 3.2364 -0.8889 34 1 5.6459 3.7226 4.2545 35 1 8.1099 2.2010 -0.6802 36 1 7.8776 3.9649 -0.6253 37 1 7.6318 3.9965 -3.1017 38 1 7.9050 2.2380 -3.1420 39 1 10.1244 1.3184 -2.8554 40 1 12.5671 1.7807 -2.8460 41 1 13.3526 4.1008 -2.5979 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871347903.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:15 Heat of formation + Delta-G solvation = -88.790004 kcal Electronic energy + Delta-G solvation = -26922.101024 eV Core-core repulsion = 22828.498423 eV Total energy + Delta-G solvation = -4093.602601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.36030 -40.22374 -38.93598 -36.52954 -36.38227 -35.34835 -34.28515 -32.36099 -31.98646 -31.13009 -29.58835 -27.64859 -25.40935 -24.92278 -23.66441 -23.46503 -21.44746 -20.48547 -19.03814 -17.57268 -17.41595 -16.84836 -16.83629 -16.52135 -16.39129 -16.08106 -15.26590 -14.99991 -14.65186 -14.53222 -14.00846 -13.89844 -13.54411 -13.35727 -13.19269 -12.97739 -12.69208 -12.52604 -12.12654 -12.09512 -11.80326 -11.70467 -11.66764 -11.50897 -11.19422 -10.99429 -10.86565 -10.66637 -10.47792 -10.26686 -10.21284 -9.87800 -9.83508 -9.62930 -9.27473 -8.89139 -8.62653 -7.98457 -6.57924 -4.18866 0.87109 1.10500 1.93188 2.49535 2.89766 3.06446 3.21901 3.28958 3.56398 3.63437 4.06247 4.24371 4.44839 4.67000 4.79636 4.85746 4.89546 5.11403 5.14836 5.15691 5.21915 5.37302 5.49444 5.50760 5.57407 5.62603 5.67152 5.89748 5.95837 6.02004 6.05082 6.19353 6.30682 6.40543 6.47957 6.52763 6.59885 6.63793 7.20325 7.65714 7.94744 8.00079 8.13562 8.84255 9.22391 9.55257 10.51918 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.003202 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.758229 B = 8742.447432 C = 9606.187130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.512 6.512 5 C -0.122 4.122 6 C 0.115 3.885 7 N -0.462 5.462 8 C -0.350 4.350 9 H 0.108 0.892 10 C 0.071 3.929 11 N -0.854 5.854 12 Si 0.869 3.131 13 H -0.269 1.269 14 H -0.287 1.287 15 H -0.260 1.260 16 C 0.482 3.518 17 O -0.597 6.597 18 C -0.111 4.111 19 C -0.068 4.068 20 C -0.104 4.104 21 C -0.062 4.062 22 C -0.169 4.169 23 C 0.105 3.895 24 N -0.479 5.479 25 C 0.174 3.826 26 Cl -0.024 7.024 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.277 0.723 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.748 -4.784 -8.745 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.399 6.399 5 C -0.161 4.161 6 C -0.009 4.009 7 N -0.182 5.182 8 C -0.476 4.476 9 H 0.126 0.874 10 C -0.137 4.137 11 N -0.488 5.488 12 Si 0.696 3.304 13 H -0.195 1.195 14 H -0.214 1.214 15 H -0.184 1.184 16 C 0.272 3.728 17 O -0.482 6.482 18 C -0.151 4.151 19 C -0.106 4.106 20 C -0.107 4.107 21 C -0.088 4.088 22 C -0.189 4.189 23 C -0.053 4.053 24 N -0.189 5.189 25 C 0.010 3.990 26 Cl 0.005 6.995 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.126 0.874 31 H 0.133 0.867 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.432 -3.527 -8.909 10.557 hybrid contribution -1.179 0.028 0.300 1.217 sum 3.253 -3.499 -8.609 9.845 Atomic orbital electron populations 1.23204 0.77111 1.03239 1.02387 1.86536 1.22923 1.34005 1.84425 1.24051 0.92368 0.81018 0.71568 1.90646 1.67396 1.36353 1.45519 1.21794 0.86017 1.01792 1.06453 1.21414 0.83353 0.93270 1.02821 1.43737 1.03627 1.64757 1.06128 1.19081 1.07349 1.34916 0.86298 0.87422 1.25315 0.97235 0.96412 0.94786 1.69736 1.42476 1.38479 0.98120 0.87066 0.81532 0.82419 0.79363 1.19541 1.21364 1.18401 1.20372 0.89638 0.79668 0.83117 1.90556 1.70642 1.55382 1.31624 1.21305 0.93686 1.04534 0.95553 1.20448 0.87661 1.04413 0.98075 1.20774 0.98611 0.91722 0.99560 1.21566 0.92618 0.99258 0.95384 1.22207 0.96504 0.98532 1.01664 1.22612 0.98978 0.87964 0.95717 1.67010 1.01933 1.37037 1.12967 1.21615 0.89430 0.88182 0.99752 1.98424 1.60047 1.45709 1.95347 0.92113 0.88411 0.92083 0.87381 0.86686 0.90841 0.90269 0.91295 0.89622 0.88886 0.89542 0.89824 0.83731 0.84178 0.82116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.65 10.57 -39.25 -0.41 -6.07 16 3 C 0.47 8.56 7.96 36.01 0.29 8.85 16 4 O -0.51 -10.65 15.73 -18.75 -0.30 -10.94 16 5 C -0.12 -2.28 6.13 -27.89 -0.17 -2.45 16 6 C 0.11 2.54 3.46 -4.04 -0.01 2.52 16 7 N -0.46 -10.53 2.21 -114.82 -0.25 -10.78 16 8 C -0.35 -8.55 9.05 -14.94 -0.14 -8.68 16 9 H 0.11 2.71 7.32 -52.49 -0.38 2.32 16 10 C 0.07 1.81 5.34 -17.47 -0.09 1.72 16 11 N -0.85 -22.73 13.96 55.50 0.77 -21.95 16 12 Si 0.87 20.64 24.88 -169.99 -4.23 16.41 16 13 H -0.27 -6.40 6.68 56.52 0.38 -6.02 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 16 C 0.48 10.36 7.61 -10.99 -0.08 10.28 16 17 O -0.60 -13.68 15.63 5.55 0.09 -13.60 16 18 C -0.11 -2.00 4.39 -27.88 -0.12 -2.12 16 19 C -0.07 -1.04 4.16 -27.88 -0.12 -1.16 16 20 C -0.10 -1.43 5.15 -104.44 -0.54 -1.97 16 21 C -0.06 -0.69 9.84 -39.29 -0.39 -1.07 16 22 C -0.17 -1.59 10.11 -39.44 -0.40 -1.99 16 23 C 0.10 1.12 11.18 -17.55 -0.20 0.93 16 24 N -0.48 -6.82 10.34 -10.36 -0.11 -6.93 16 25 C 0.17 2.61 7.27 -17.45 -0.13 2.48 16 26 Cl -0.02 -0.37 27.32 -51.86 -1.42 -1.79 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 30 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 31 H 0.12 2.11 8.14 -51.93 -0.42 1.68 16 32 H 0.07 1.73 2.91 -51.93 -0.15 1.58 16 33 H 0.08 1.80 7.46 -51.93 -0.39 1.41 16 34 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.09 1.45 7.74 -51.93 -0.40 1.05 16 36 H 0.09 1.77 7.80 -51.93 -0.41 1.37 16 37 H 0.09 1.42 7.12 -51.93 -0.37 1.05 16 38 H 0.08 1.21 8.01 -51.93 -0.42 0.80 16 39 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 40 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 365.27 15.07 5.50 5.50 Total: -1.00 -30.79 365.27 -6.44 -37.23 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.06 Total: 4.11 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -1.03 Total: 8.81 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.41 Total: -39.67 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.62 Total: -30.61 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.23 Total: 16.41 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.42 Total: -1.79 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.79 -6.44 -37.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871347903.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.560 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds