Wall clock time and date at job start Sat Apr 11 2020 05:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99822 * 2 1 4 4 O 1.20830 * 120.00203 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00254 * 179.97438 * 3 2 1 6 6 C 1.52990 * 109.47307 * 180.02562 * 5 3 2 7 7 N 1.46505 * 109.47152 * 179.97438 * 6 5 3 8 8 C 1.37092 * 120.00010 * 270.00183 * 7 6 5 9 9 H 1.07999 * 119.99894 * 143.97780 * 8 7 6 10 10 C 1.38946 * 120.00245 * 323.97062 * 8 7 6 11 11 N 1.31415 * 120.00283 * 158.94702 * 10 8 7 12 12 Si 1.86805 * 119.99872 * 338.95227 * 10 8 7 13 13 H 1.48497 * 109.47257 * 95.20987 * 12 10 8 14 14 H 1.48504 * 109.46624 * 215.20742 * 12 10 8 15 15 H 1.48495 * 109.47165 * 335.20592 * 12 10 8 16 16 C 1.34777 * 119.99736 * 90.00052 * 7 6 5 17 17 O 1.21294 * 120.00352 * 354.80114 * 16 7 6 18 18 C 1.50699 * 120.00016 * 174.80379 * 16 7 6 19 19 C 1.53004 * 109.47171 * 184.36097 * 18 16 7 20 20 C 1.50704 * 109.47071 * 178.59183 * 19 18 16 21 21 C 1.38610 * 120.42052 * 95.29040 * 20 19 18 22 22 C 1.38668 * 118.43498 * 180.02562 * 21 20 19 23 23 C 1.38198 * 119.19091 * 0.02562 * 22 21 20 24 24 N 1.31876 * 120.77963 * 359.97438 * 23 22 21 25 25 C 1.31981 * 121.70714 * 359.97438 * 24 23 22 26 26 Cl 1.73599 * 119.63081 * 180.02562 * 25 24 23 27 27 H 1.09006 * 109.47320 * 60.00354 * 1 2 3 28 28 H 1.09003 * 109.46962 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47545 * 299.99933 * 1 2 3 30 30 H 1.08999 * 109.46639 * 59.99771 * 5 3 2 31 31 H 1.08998 * 109.46982 * 300.00163 * 5 3 2 32 32 H 1.08999 * 109.47533 * 60.00227 * 6 5 3 33 33 H 1.08998 * 109.47157 * 299.99963 * 6 5 3 34 34 H 0.96991 * 120.00116 * 180.02562 * 11 10 8 35 35 H 1.08991 * 109.47236 * 64.36060 * 18 16 7 36 36 H 1.09006 * 109.46724 * 304.35702 * 18 16 7 37 37 H 1.09004 * 109.46914 * 58.59389 * 19 18 16 38 38 H 1.08996 * 109.47140 * 298.58932 * 19 18 16 39 39 H 1.07997 * 120.78072 * 0.04848 * 21 20 19 40 40 H 1.07994 * 120.40784 * 180.02562 * 22 21 20 41 41 H 1.07994 * 119.60524 * 180.25777 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7421 0.0011 7 7 5.4630 2.8189 0.0023 8 6 6.1466 2.8546 1.1901 9 1 7.0992 2.3537 1.2802 10 6 5.6140 3.5353 2.2780 11 7 6.0179 3.2476 3.4950 12 14 4.3235 4.8593 2.0107 13 1 2.9698 4.2709 2.1728 14 1 4.5142 5.9443 3.0065 15 1 4.4610 5.4150 0.6406 16 6 6.1369 2.8543 -1.1644 17 8 5.5408 2.7278 -2.2132 18 6 7.6310 3.0510 -1.1659 19 6 8.1294 3.1615 -2.6083 20 6 9.6186 3.3928 -2.6089 21 6 10.4943 2.3272 -2.7463 22 6 11.8564 2.5870 -2.7407 23 6 12.2934 3.8904 -2.5989 24 7 11.4321 4.8807 -2.4703 25 6 10.1290 4.6714 -2.4722 26 17 9.0436 6.0152 -2.2998 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.9563 0.7807 -0.8891 31 1 3.9557 0.7811 0.8908 32 1 3.6100 3.2360 0.8910 33 1 3.6106 3.2364 -0.8889 34 1 5.6459 3.7226 4.2545 35 1 8.1099 2.2010 -0.6802 36 1 7.8776 3.9649 -0.6253 37 1 7.6318 3.9965 -3.1017 38 1 7.9050 2.2380 -3.1420 39 1 10.1244 1.3184 -2.8554 40 1 12.5671 1.7807 -2.8460 41 1 13.3526 4.1008 -2.5979 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871347903.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:14 Heat of formation + Delta-G solvation = -106.825642 kcal Electronic energy + Delta-G solvation = -26922.883108 eV Core-core repulsion = 22828.498423 eV Total energy + Delta-G solvation = -4094.384685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.68557 -41.31331 -40.60573 -37.79307 -37.60950 -37.05081 -35.54258 -34.21514 -33.05969 -32.63195 -30.79334 -28.78054 -27.01302 -26.51155 -24.86312 -24.56115 -22.58649 -21.91555 -20.85078 -19.12114 -18.50276 -18.30156 -18.19542 -17.84108 -17.78793 -17.54041 -16.80248 -16.23911 -16.17430 -15.72632 -15.41212 -15.24351 -14.88613 -14.63811 -14.49213 -14.38651 -14.11597 -13.96694 -13.67589 -13.58106 -13.08179 -13.05857 -12.92483 -12.78509 -12.69525 -12.62702 -12.24889 -12.12701 -11.88883 -11.82472 -11.76902 -11.65308 -11.15138 -10.80122 -10.58755 -10.46867 -9.86395 -9.79467 -8.56733 -6.15655 -0.04817 0.22089 0.89241 1.04773 1.14824 1.27533 1.35273 1.57409 1.86870 2.11528 2.57550 2.73354 2.92148 3.48007 3.69695 3.76248 3.82347 3.88873 4.05447 4.06184 4.15681 4.28034 4.28981 4.31306 4.36568 4.40516 4.44453 4.62730 4.65809 4.68046 4.78943 4.86499 4.96880 5.11294 5.22899 5.24999 5.29741 5.35698 5.61938 6.03551 6.20399 6.60846 6.75264 6.91668 7.36621 7.72482 8.56700 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.003202 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.758229 B = 8742.447432 C = 9606.187130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.359 6.359 3 C 0.473 3.527 4 O -0.542 6.542 5 C -0.114 4.114 6 C 0.112 3.888 7 N -0.474 5.474 8 C -0.334 4.334 9 H 0.101 0.899 10 C 0.043 3.957 11 N -0.884 5.884 12 Si 0.904 3.096 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.481 3.519 17 O -0.609 6.609 18 C -0.104 4.104 19 C -0.056 4.056 20 C -0.119 4.119 21 C -0.061 4.061 22 C -0.151 4.151 23 C 0.102 3.898 24 N -0.508 5.508 25 C 0.152 3.848 26 Cl -0.050 7.050 27 H 0.063 0.937 28 H 0.139 0.861 29 H 0.059 0.941 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.280 0.720 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.171 0.829 40 H 0.184 0.816 41 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.023 -6.999 -9.664 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.317 3.683 4 O -0.432 6.432 5 C -0.152 4.152 6 C -0.011 4.011 7 N -0.195 5.195 8 C -0.461 4.461 9 H 0.119 0.881 10 C -0.163 4.163 11 N -0.521 5.521 12 Si 0.732 3.268 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.197 1.197 16 C 0.272 3.728 17 O -0.495 6.495 18 C -0.143 4.143 19 C -0.094 4.094 20 C -0.122 4.122 21 C -0.087 4.087 22 C -0.171 4.171 23 C -0.055 4.055 24 N -0.219 5.219 25 C -0.011 4.011 26 Cl -0.021 7.021 27 H 0.081 0.919 28 H 0.157 0.843 29 H 0.078 0.922 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.189 0.811 40 H 0.202 0.798 41 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 5.696 -5.755 -9.837 12.741 hybrid contribution -1.507 0.607 0.476 1.693 sum 4.189 -5.148 -9.361 11.475 Atomic orbital electron populations 1.23611 0.74622 1.05998 1.02510 1.86509 1.25247 1.32112 1.83637 1.23845 0.92131 0.81391 0.70926 1.90637 1.67950 1.37502 1.47120 1.21616 0.86861 0.99482 1.07284 1.21336 0.83019 0.95367 1.01388 1.43845 1.03934 1.65637 1.06064 1.19009 1.06904 1.33655 0.86514 0.88103 1.25619 0.98346 0.97424 0.94870 1.69761 1.44017 1.39750 0.98580 0.86511 0.80435 0.81355 0.78456 1.19860 1.21048 1.19662 1.20981 0.91036 0.78317 0.82427 1.90542 1.71400 1.55595 1.31953 1.21279 0.91130 1.04283 0.97622 1.20263 0.89019 1.04166 0.95951 1.20664 0.97822 0.92222 1.01497 1.21959 0.93089 0.99529 0.94100 1.22672 0.96483 0.99084 0.98833 1.23336 1.00048 0.88076 0.94081 1.66979 1.01897 1.38841 1.14201 1.21657 0.89812 0.87908 1.01741 1.98404 1.61025 1.47067 1.95634 0.91863 0.84345 0.92197 0.86140 0.86153 0.92402 0.91464 0.91031 0.88272 0.90204 0.91299 0.88797 0.81125 0.79847 0.78777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.36 -10.58 10.57 -51.39 -0.54 -11.13 16 3 C 0.47 17.01 7.96 71.24 0.57 17.58 16 4 O -0.54 -22.52 15.73 21.95 0.35 -22.18 16 5 C -0.11 -4.20 6.13 29.85 0.18 -4.02 16 6 C 0.11 4.99 3.46 86.37 0.30 5.29 16 7 N -0.47 -21.63 2.21 -635.56 -1.41 -23.04 16 8 C -0.33 -16.35 9.05 84.04 0.76 -15.59 16 9 H 0.10 5.06 7.32 -2.91 -0.02 5.04 16 10 C 0.04 2.21 5.34 84.92 0.45 2.66 16 11 N -0.88 -47.37 13.96 21.66 0.30 -47.07 16 12 Si 0.90 43.21 24.88 68.60 1.71 44.91 16 13 H -0.27 -13.00 6.68 99.48 0.66 -12.34 16 14 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 15 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 16 C 0.48 20.65 7.61 87.66 0.67 21.31 16 17 O -0.61 -27.82 15.63 -3.07 -0.05 -27.87 16 18 C -0.10 -3.69 4.39 29.85 0.13 -3.56 16 19 C -0.06 -1.68 4.16 29.85 0.12 -1.55 16 20 C -0.12 -3.13 5.15 -19.75 -0.10 -3.23 16 21 C -0.06 -1.14 9.84 22.46 0.22 -0.92 16 22 C -0.15 -2.19 10.11 22.36 0.23 -1.96 16 23 C 0.10 1.86 11.18 84.68 0.95 2.81 16 24 N -0.51 -13.86 10.34 -186.69 -1.93 -15.79 16 25 C 0.15 4.50 7.27 84.70 0.62 5.11 16 26 Cl -0.05 -1.61 27.32 -2.72 -0.07 -1.68 16 27 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 30 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 31 H 0.12 4.32 8.14 -2.39 -0.02 4.30 16 32 H 0.06 2.76 2.91 -2.39 -0.01 2.75 16 33 H 0.07 3.11 7.46 -2.39 -0.02 3.09 16 34 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.10 3.25 7.74 -2.39 -0.02 3.23 16 36 H 0.08 3.09 7.80 -2.38 -0.02 3.07 16 37 H 0.07 2.30 7.12 -2.39 -0.02 2.29 16 38 H 0.09 2.59 8.01 -2.39 -0.02 2.57 16 39 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.18 1.09 8.06 -2.91 -0.02 1.06 16 41 H 0.20 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -67.77 365.27 5.66 -62.11 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 1.02 Total: 16.06 kcal Atomic # 6 Polarization: 19.38 SS G_CDS: 6.29 Total: 25.67 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -3.03 Total: -85.90 kcal Atomic # 8 Polarization: -60.92 SS G_CDS: -0.25 Total: -61.17 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.71 Total: 44.91 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.07 Total: -1.68 kcal Total: -67.77 5.66 -62.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871347903.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.715 kcal (2) G-P(sol) polarization free energy of solvation -67.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds