Wall clock time and date at job start Sat Apr 11 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35527 * 116.99863 * 2 1 4 4 C 1.39325 * 120.48023 * 179.97438 * 3 2 1 5 5 C 1.39204 * 118.23951 * 180.02562 * 4 3 2 6 6 C 1.48557 * 120.51317 * 179.97438 * 5 4 3 7 7 N 1.30784 * 126.30116 * 0.04365 * 6 5 4 8 8 O 1.21271 * 110.37069 * 180.02562 * 7 6 5 9 9 C 1.34244 * 109.89851 * 359.97438 * 8 7 6 10 10 C 1.47601 * 126.58707 * 180.02562 * 9 8 7 11 11 C 1.39603 * 120.19344 * 179.97438 * 10 9 8 12 12 C 1.37880 * 119.91773 * 179.97438 * 11 10 9 13 13 C 1.38534 * 120.31443 * 0.02865 * 12 11 10 14 14 C 1.38061 * 120.38983 * 359.97438 * 13 12 11 15 15 C 1.38787 * 120.07027 * 359.67869 * 14 13 12 16 16 O 1.35570 * 120.15480 * 180.29852 * 15 14 13 17 17 C 1.34802 * 117.00447 * 354.40774 * 16 15 14 18 18 H 1.08007 * 119.99998 * 5.05356 * 17 16 15 19 19 C 1.38679 * 120.00431 * 185.06339 * 17 16 15 20 20 N 1.31530 * 119.99891 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00022 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47168 * 90.00059 * 21 19 17 23 23 H 1.48506 * 109.47109 * 209.99670 * 21 19 17 24 24 H 1.48496 * 109.47420 * 329.99580 * 21 19 17 25 25 N 1.32073 * 106.83022 * 359.73678 * 9 8 7 26 26 N 1.33253 * 118.97471 * 359.97438 * 5 4 3 27 27 C 1.31613 * 120.86309 * 0.02562 * 26 5 4 28 28 N 1.31833 * 121.94831 * 0.27085 * 27 26 5 29 29 H 1.09002 * 109.47269 * 60.00445 * 1 2 3 30 30 H 1.09005 * 109.46856 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47625 * 299.99328 * 1 2 3 32 32 H 1.08002 * 120.88013 * 0.02562 * 4 3 2 33 33 H 1.07998 * 120.03931 * 0.02972 * 11 10 9 34 34 H 1.08004 * 119.83737 * 179.97438 * 12 11 10 35 35 H 1.08009 * 119.80025 * 179.97438 * 13 12 11 36 36 H 1.08000 * 119.96400 * 179.97438 * 14 13 12 37 37 H 0.97009 * 120.00115 * 179.97438 * 20 19 17 38 38 H 1.08000 * 119.02610 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 3.4349 1.2922 0.0005 5 6 4.0178 2.5563 0.0011 6 6 5.4959 2.7052 0.0022 7 7 6.3720 1.7342 0.0020 8 8 7.4989 2.1823 0.0037 9 6 7.4570 3.5241 0.0046 10 6 8.6142 4.4404 0.0061 11 6 8.4155 5.8222 0.0063 12 6 9.5006 6.6730 0.0083 13 6 10.7887 6.1633 0.0094 14 6 11.0000 4.7989 0.0091 15 6 9.9195 3.9279 0.0144 16 8 10.1250 2.5879 0.0202 17 6 11.3992 2.1635 -0.0965 18 1 12.2079 2.8793 -0.1069 19 6 11.6716 0.8080 -0.2035 20 7 10.6868 -0.0637 -0.1905 21 14 13.4373 0.2201 -0.3660 22 1 14.0034 -0.0259 0.9847 23 1 13.4694 -1.0389 -1.1529 24 1 14.2427 1.2576 -1.0588 25 7 6.1816 3.8669 -0.0025 26 7 3.2296 3.6306 0.0005 27 6 1.9193 3.5067 0.0000 28 7 1.3302 2.3273 0.0053 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 4.0445 0.4006 0.0005 33 1 7.4132 6.2243 0.0059 34 1 9.3454 7.7418 0.0081 35 1 11.6327 6.8373 0.0105 36 1 12.0072 4.4091 0.0095 37 1 10.8773 -1.0120 -0.2657 38 1 1.3087 4.3975 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000904785338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:42 Heat of formation + Delta-G solvation = 94.707688 kcal Electronic energy + Delta-G solvation = -27666.036570 eV Core-core repulsion = 23479.283532 eV Total energy + Delta-G solvation = -4186.753038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.100 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.86940 -41.34746 -39.29328 -38.74229 -36.71664 -35.46332 -33.65581 -32.70622 -32.48784 -31.70575 -29.81351 -29.04346 -27.86442 -25.68967 -25.24573 -24.71343 -23.67370 -22.50286 -21.56170 -20.87227 -18.88565 -18.26514 -18.19636 -17.46503 -17.41055 -16.45239 -16.31717 -15.61695 -15.57020 -15.22040 -14.92759 -14.76701 -14.52670 -14.45448 -14.02509 -13.95981 -13.73538 -13.22360 -12.84215 -12.35383 -12.12014 -12.00914 -11.87225 -11.75907 -11.55422 -11.17535 -11.09067 -11.02028 -10.89915 -10.58672 -10.57781 -10.49646 -9.77415 -9.67657 -9.64353 -9.30689 -9.04119 -8.21669 -7.46741 -6.65582 -4.24144 0.39786 0.86551 1.15181 2.15943 2.27827 2.53686 2.89341 3.02744 3.04033 3.09067 3.26057 3.42297 3.70353 3.78322 3.78914 4.06083 4.36059 4.59032 4.71195 4.84183 4.91834 4.95952 4.98021 5.09864 5.26112 5.32622 5.42458 5.51560 5.59084 5.77174 5.88362 6.05112 6.13083 6.35773 6.44826 6.52679 6.60909 6.82071 6.86859 6.96837 7.07584 7.15083 7.50413 7.73963 7.84158 8.64660 8.75532 9.36625 10.48370 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.002951 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.261659 B = 9485.516639 C =11629.578217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.298 6.298 3 C 0.367 3.633 4 C -0.211 4.211 5 C 0.296 3.704 6 C 0.185 3.815 7 N -0.365 5.365 8 O 0.132 5.868 9 C 0.264 3.736 10 C -0.135 4.135 11 C -0.008 4.008 12 C -0.222 4.222 13 C -0.044 4.044 14 C -0.231 4.231 15 C 0.177 3.823 16 O -0.146 6.146 17 C -0.397 4.397 18 H 0.100 0.900 19 C 0.046 3.954 20 N -0.834 5.834 21 Si 0.944 3.056 22 H -0.271 1.271 23 H -0.275 1.275 24 H -0.265 1.265 25 N -0.472 5.472 26 N -0.506 5.506 27 C 0.338 3.662 28 N -0.575 5.575 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.163 0.837 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.137 0.863 37 H 0.276 0.724 38 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.022 4.879 0.185 12.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.201 6.201 3 C 0.180 3.820 4 C -0.236 4.236 5 C 0.152 3.848 6 C -0.085 4.085 7 N -0.069 5.069 8 O 0.064 5.936 9 C 0.051 3.949 10 C -0.140 4.140 11 C -0.028 4.028 12 C -0.241 4.241 13 C -0.063 4.063 14 C -0.250 4.250 15 C 0.117 3.883 16 O -0.045 6.045 17 C -0.472 4.472 18 H 0.117 0.883 19 C -0.163 4.163 20 N -0.466 5.466 21 Si 0.768 3.232 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.189 1.189 25 N -0.207 5.207 26 N -0.226 5.226 27 C 0.050 3.950 28 N -0.307 5.307 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.180 0.820 33 H 0.148 0.852 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.154 0.846 37 H 0.086 0.914 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -13.286 4.244 0.184 13.949 hybrid contribution 1.263 -0.901 -0.064 1.553 sum -12.023 3.343 0.120 12.480 Atomic orbital electron populations 1.22983 0.76434 1.03498 1.02833 1.86271 1.23521 1.23633 1.86718 1.19843 0.88933 0.85134 0.88105 1.21803 0.93108 1.00217 1.08504 1.17876 0.88223 0.88021 0.90644 1.22876 0.93991 0.85682 1.05955 1.74883 0.90414 1.22478 1.19098 1.85689 1.22216 1.21568 1.64122 1.26205 0.92720 0.82374 0.93600 1.16259 0.84894 0.90306 1.22523 1.20752 0.99380 0.89809 0.92882 1.20556 0.92180 0.98841 1.12566 1.21011 0.96661 0.94548 0.94055 1.21093 0.99223 0.93079 1.11605 1.19267 0.91809 0.85288 0.91893 1.83953 1.30933 1.15395 1.74173 1.21485 0.80634 0.92423 1.52658 0.88309 1.25409 1.00331 0.94673 0.95864 1.70059 1.31771 1.02727 1.41996 0.85664 0.79778 0.78865 0.78911 1.19606 1.20026 1.18908 1.72278 1.00454 1.25070 1.22908 1.68325 1.05905 1.32578 1.15772 1.24738 0.87732 0.93802 0.88767 1.68070 1.41916 0.99284 1.21380 0.91875 0.88116 0.91859 0.81980 0.85238 0.86469 0.86648 0.84570 0.91432 0.77631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.41 101.05 1.05 1.35 16 2 O -0.30 -3.56 10.49 -18.27 -0.19 -3.75 16 3 C 0.37 4.97 7.53 -16.73 -0.13 4.84 16 4 C -0.21 -3.23 9.78 -38.82 -0.38 -3.61 16 5 C 0.30 5.11 6.79 -82.63 -0.56 4.55 16 6 C 0.19 3.77 7.92 -156.34 -1.24 2.53 16 7 N -0.36 -8.05 11.90 31.21 0.37 -7.68 16 8 O 0.13 3.16 9.99 -1.99 -0.02 3.14 16 9 C 0.26 5.81 7.95 -13.86 -0.11 5.70 16 10 C -0.14 -2.82 5.89 -104.82 -0.62 -3.43 16 11 C -0.01 -0.15 9.70 -39.20 -0.38 -0.53 16 12 C -0.22 -3.44 10.03 -39.60 -0.40 -3.84 16 13 C -0.04 -0.69 10.03 -39.54 -0.40 -1.09 16 14 C -0.23 -4.43 9.16 -39.44 -0.36 -4.79 16 15 C 0.18 3.95 6.66 -38.63 -0.26 3.69 16 16 O -0.15 -3.81 8.20 -17.85 -0.15 -3.96 16 17 C -0.40 -10.09 9.49 30.90 0.29 -9.80 16 18 H 0.10 2.26 5.21 -52.48 -0.27 1.99 16 19 C 0.05 1.16 5.49 -17.52 -0.10 1.06 16 20 N -0.83 -22.91 13.67 55.48 0.76 -22.15 16 21 Si 0.94 18.96 29.55 -169.99 -5.02 13.94 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 25 N -0.47 -9.90 11.27 -10.25 -0.12 -10.01 16 26 N -0.51 -7.96 10.40 -11.16 -0.12 -8.08 16 27 C 0.34 4.09 12.28 -92.28 -1.13 2.96 16 28 N -0.58 -7.16 9.37 -14.68 -0.14 -7.30 16 29 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.16 2.44 7.94 -52.49 -0.42 2.02 16 33 H 0.13 2.09 7.87 -52.49 -0.41 1.68 16 34 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.14 2.54 5.64 -52.49 -0.30 2.24 16 37 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.21 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 348.78 15.07 5.26 5.26 Total: -1.00 -30.53 348.78 -7.14 -37.67 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -3.07 Total: 3.34 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -4.71 Total: -0.41 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.76 Total: -55.23 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.36 Total: -4.57 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.53 -7.14 -37.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904785338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.378 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds