Wall clock time and date at job start Sat Apr 11 2020 05:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47172 * 2 1 4 4 O 1.45194 * 109.47271 * 120.00827 * 2 1 3 5 5 C 1.34770 * 116.99839 * 269.99355 * 4 2 1 6 6 O 1.21536 * 119.99972 * 0.02562 * 5 4 2 7 7 C 1.47297 * 120.00342 * 179.97438 * 5 4 2 8 8 C 1.39887 * 120.08258 * 359.72795 * 7 5 4 9 9 C 1.36549 * 120.06174 * 179.78323 * 8 7 5 10 10 C 1.39280 * 120.23965 * 0.47117 * 9 8 7 11 11 N 1.39012 * 119.91273 * 179.76499 * 10 9 8 12 12 C 1.39162 * 120.16991 * 359.78348 * 10 9 8 13 13 C 1.37821 * 119.93443 * 359.97438 * 12 10 9 14 14 Cl 1.73606 * 120.11704 * 179.97438 * 13 12 10 15 15 C 1.50704 * 109.46723 * 240.00706 * 2 1 3 16 16 O 1.21280 * 119.99982 * 256.02521 * 15 2 1 17 17 N 1.34773 * 120.00407 * 76.02850 * 15 2 1 18 18 C 1.46508 * 119.99696 * 5.36125 * 17 15 2 19 19 C 1.46499 * 120.00263 * 185.36344 * 17 15 2 20 20 C 1.50703 * 109.46999 * 90.00148 * 19 17 15 21 21 H 1.07993 * 120.00255 * 359.97438 * 20 19 17 22 22 C 1.37879 * 119.99918 * 180.02562 * 20 19 17 23 23 N 1.31517 * 119.99916 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00204 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46781 * 89.99745 * 24 22 20 26 26 H 1.48500 * 109.47304 * 209.99813 * 24 22 20 27 27 H 1.48501 * 109.46921 * 330.00351 * 24 22 20 28 28 H 1.09001 * 109.46936 * 306.13206 * 1 2 3 29 29 H 1.08997 * 109.47212 * 66.13101 * 1 2 3 30 30 H 1.09001 * 109.47312 * 186.13107 * 1 2 3 31 31 H 1.08000 * 119.97313 * 0.02562 * 8 7 5 32 32 H 1.08001 * 119.87973 * 180.21398 * 9 8 7 33 33 H 0.97003 * 120.00061 * 180.02562 * 11 10 9 34 34 H 0.96994 * 120.00742 * 0.02562 * 11 10 9 35 35 H 1.07997 * 120.02851 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47131 * 84.82819 * 18 17 15 37 37 H 1.08998 * 109.46972 * 204.82357 * 18 17 15 38 38 H 1.09000 * 109.47137 * 324.82094 * 18 17 15 39 39 H 1.09000 * 109.46726 * 209.99670 * 19 17 15 40 40 H 1.08993 * 109.46948 * 329.99694 * 19 17 15 41 41 H 0.97001 * 120.00045 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6846 1.1854 5 6 2.2181 0.0668 2.2854 6 8 1.9971 1.2615 2.2548 7 6 2.7079 -0.5600 3.5251 8 6 2.9564 -1.9361 3.5643 9 6 3.4147 -2.5160 4.7124 10 6 3.6276 -1.7436 5.8518 11 7 4.0896 -2.3419 7.0184 12 6 3.3785 -0.3747 5.8253 13 6 2.9206 0.2187 4.6688 14 17 2.6077 1.9260 4.6307 15 6 2.0322 -0.7103 -1.2306 16 8 2.4735 -1.8366 -1.1431 17 7 1.9912 -0.0940 -2.4284 18 6 1.5689 1.3061 -2.5177 19 6 2.3687 -0.8239 -3.6412 20 6 1.1504 -1.4914 -4.2255 21 1 0.1910 -1.3830 -3.7417 22 6 1.2608 -2.2412 -5.3773 23 7 2.4292 -2.3736 -5.9662 24 14 -0.2491 -3.0691 -6.1012 25 1 -0.9070 -2.1466 -7.0610 26 1 0.1576 -4.3106 -6.8073 27 1 -1.1984 -3.4082 -5.0106 28 1 -0.3633 0.6060 0.8300 29 1 -0.3633 0.4158 -0.9397 30 1 -0.3634 -1.0218 0.1098 31 1 2.7894 -2.5398 2.6845 32 1 3.6089 -3.5781 4.7384 33 1 4.2379 -1.8053 7.8128 34 1 4.2637 -3.2959 7.0383 35 1 3.5439 0.2219 6.7102 36 1 2.4229 1.9560 -2.3267 37 1 1.1773 1.5046 -3.5154 38 1 0.7924 1.4993 -1.7776 39 1 2.7859 -0.1280 -4.3690 40 1 3.1134 -1.5801 -3.3931 41 1 2.5070 -2.9015 -6.7763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920541413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:51 Heat of formation + Delta-G solvation = -87.099987 kcal Electronic energy + Delta-G solvation = -26798.695066 eV Core-core repulsion = 22705.165750 eV Total energy + Delta-G solvation = -4093.529316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.68027 -39.62195 -38.67271 -36.79933 -36.10674 -34.90502 -34.83203 -32.79464 -31.61864 -31.15404 -29.50208 -27.75095 -26.02206 -24.73821 -23.72060 -23.22736 -22.28198 -20.80889 -18.77817 -18.33237 -17.67466 -17.34879 -16.65770 -16.49840 -16.03490 -15.86213 -15.26405 -14.87534 -14.74398 -14.58727 -14.32384 -14.06671 -13.99310 -13.41413 -13.31200 -12.87489 -12.64409 -12.27715 -12.24742 -12.06811 -12.02217 -11.77435 -11.66203 -11.41642 -11.27005 -11.20772 -10.90466 -10.80728 -10.62394 -10.50058 -10.16435 -9.94311 -9.64042 -9.19566 -8.85564 -8.44243 -8.12688 -7.68230 -6.05013 -4.10205 0.55035 0.95488 1.89061 2.52186 2.58970 3.28754 3.30033 3.30581 3.37114 3.42165 3.49657 3.96452 4.42429 4.43827 4.65119 4.75188 4.92548 4.95760 5.02571 5.14013 5.21183 5.29605 5.47494 5.56482 5.62294 5.72286 5.79343 5.91308 5.92620 5.98482 6.14560 6.21342 6.30493 6.53973 6.83524 7.02592 7.13646 7.42804 7.50151 7.87277 7.92077 8.21310 8.33602 8.86572 9.02178 9.54852 11.03072 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.002541 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.303384 B =11014.980002 C =11897.545899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.073 3.927 3 H 0.103 0.897 4 O -0.325 6.325 5 C 0.506 3.494 6 O -0.498 6.498 7 C -0.181 4.181 8 C 0.005 3.995 9 C -0.209 4.209 10 C 0.262 3.738 11 N -0.862 5.862 12 C -0.213 4.213 13 C 0.072 3.928 14 Cl -0.031 7.031 15 C 0.511 3.489 16 O -0.522 6.522 17 N -0.597 5.597 18 C 0.074 3.926 19 C 0.245 3.755 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.152 0.848 32 H 0.135 0.865 33 H 0.402 0.598 34 H 0.405 0.595 35 H 0.139 0.861 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.035 0.965 40 H 0.046 0.954 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 4.796 26.207 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.015 3.985 3 H 0.121 0.879 4 O -0.240 6.240 5 C 0.351 3.649 6 O -0.387 6.387 7 C -0.185 4.185 8 C -0.014 4.014 9 C -0.232 4.232 10 C 0.153 3.847 11 N -0.399 5.399 12 C -0.236 4.236 13 C 0.044 3.956 14 Cl -0.002 7.002 15 C 0.295 3.705 16 O -0.398 6.398 17 N -0.331 5.331 18 C -0.070 4.070 19 C 0.127 3.873 20 C -0.567 4.567 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.198 1.198 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.170 0.830 32 H 0.153 0.847 33 H 0.231 0.769 34 H 0.234 0.766 35 H 0.156 0.844 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.702 4.621 26.003 26.465 hybrid contribution -0.754 -0.308 -0.229 0.846 sum 0.948 4.313 25.774 26.150 Atomic orbital electron populations 1.22156 0.92204 1.04069 1.03718 1.22624 0.95942 0.97415 0.82535 0.87929 1.86650 1.76930 1.41033 1.19416 1.20880 0.74951 0.85200 0.83892 1.90892 1.48267 1.15341 1.84158 1.18616 1.14015 0.94233 0.91605 1.21077 0.89642 0.92547 0.98161 1.20453 1.09704 1.00588 0.92427 1.17830 0.88653 0.91187 0.86983 1.42468 1.73840 1.12083 1.11493 1.20288 1.11559 0.93348 0.98439 1.20672 0.95597 0.86269 0.93075 1.98423 1.93216 1.10071 1.98467 1.19779 0.80082 0.86807 0.83795 1.90680 1.45231 1.18462 1.85384 1.48070 1.65348 1.11912 1.07724 1.21832 0.99035 0.82666 1.03488 1.19359 0.96669 0.92074 0.79219 1.21432 0.94804 1.31367 1.09110 0.92353 1.24941 0.96238 0.96157 0.96761 1.69935 1.23170 1.40503 1.19668 0.86486 0.82799 0.78991 0.79088 1.20627 1.21078 1.19849 0.91201 0.89602 0.90732 0.83039 0.84683 0.76882 0.76631 0.84360 0.93425 0.90140 0.92194 0.94669 0.93570 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.19 37.16 0.34 -2.11 16 2 C 0.07 1.28 2.14 -27.88 -0.06 1.22 16 3 H 0.10 1.66 6.32 -51.93 -0.33 1.33 16 4 O -0.32 -5.66 8.70 -47.21 -0.41 -6.07 16 5 C 0.51 7.99 7.85 34.41 0.27 8.26 16 6 O -0.50 -8.32 13.22 -19.29 -0.26 -8.57 16 7 C -0.18 -2.38 5.88 -104.94 -0.62 -3.00 16 8 C 0.00 0.06 9.55 -39.57 -0.38 -0.32 16 9 C -0.21 -1.78 9.82 -39.80 -0.39 -2.17 16 10 C 0.26 1.97 6.75 -83.87 -0.57 1.41 16 11 N -0.86 -3.36 9.05 32.40 0.29 -3.07 16 12 C -0.21 -1.86 9.66 -39.39 -0.38 -2.24 16 13 C 0.07 0.84 6.35 -39.08 -0.25 0.59 16 14 Cl -0.03 -0.39 26.02 -51.86 -1.35 -1.74 16 15 C 0.51 11.17 6.95 -10.99 -0.08 11.09 16 16 O -0.52 -13.59 16.13 -13.54 -0.22 -13.80 16 17 N -0.60 -12.94 2.86 -182.95 -0.52 -13.46 16 18 C 0.07 1.20 9.79 59.85 0.59 1.78 16 19 C 0.25 6.46 5.18 -5.19 -0.03 6.43 16 20 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 21 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 24 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.22 6.33 -51.93 -0.33 0.89 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.15 1.75 7.60 -52.49 -0.40 1.36 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.40 0.85 8.83 -40.82 -0.36 0.49 16 34 H 0.40 0.89 8.83 -40.82 -0.36 0.53 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.30 8.03 -51.93 -0.42 0.89 16 38 H 0.06 0.82 4.92 -51.93 -0.26 0.57 16 39 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 40 H 0.05 1.37 7.35 -51.93 -0.38 0.99 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 367.04 15.07 5.53 5.53 Total: -1.00 -35.39 367.04 -8.09 -43.48 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -4.91 Total: -0.62 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -1.97 Total: 7.39 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.51 Total: -42.31 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.88 Total: -28.45 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.35 Total: -1.74 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.39 -8.09 -43.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920541413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.623 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds