Wall clock time and date at job start Sat Apr 11 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.64259 * 2 1 4 4 C 1.54337 * 110.99946 * 236.92296 * 2 1 3 5 5 N 1.47018 * 107.26210 * 219.60015 * 4 2 1 6 6 C 1.34784 * 125.64699 * 178.85159 * 5 4 2 7 7 O 1.21283 * 119.99649 * 359.71689 * 6 5 4 8 8 C 1.50697 * 119.99774 * 179.44586 * 6 5 4 9 9 S 1.81008 * 109.46759 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99946 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99996 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00252 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00327 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 119.99735 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47351 * 90.00094 * 14 12 10 16 16 H 1.48496 * 109.47299 * 210.00069 * 14 12 10 17 17 H 1.48507 * 109.47281 * 330.00181 * 14 12 10 18 18 C 1.47426 * 108.70612 * 358.58787 * 5 4 2 19 19 C 1.54906 * 104.82959 * 24.35650 * 18 5 4 20 20 H 1.09005 * 111.00459 * 204.92032 * 19 18 5 21 21 N 1.46503 * 111.00676 * 81.06332 * 19 18 5 22 22 C 1.34780 * 119.99395 * 86.45281 * 21 19 18 23 23 O 1.21492 * 120.00516 * 0.02562 * 22 21 19 24 24 C 1.48285 * 119.99311 * 180.02562 * 22 21 19 25 25 C 1.47493 * 128.70769 * 180.02562 * 24 22 21 26 26 N 1.30651 * 102.71352 * 180.02562 * 25 24 22 27 27 O 1.20833 * 109.61842 * 359.97438 * 26 25 24 28 28 N 1.20911 * 115.91258 * 359.69674 * 27 26 25 29 29 H 1.08995 * 109.47245 * 296.85699 * 1 2 3 30 30 H 1.08997 * 109.47049 * 56.85812 * 1 2 3 31 31 H 1.09001 * 109.47016 * 176.85677 * 1 2 3 32 32 H 1.09004 * 109.98978 * 100.12893 * 4 2 1 33 33 H 1.08996 * 109.78305 * 338.96008 * 4 2 1 34 34 H 1.09001 * 109.46809 * 299.99238 * 8 6 5 35 35 H 1.08993 * 109.47525 * 59.99679 * 8 6 5 36 36 H 0.97000 * 120.00223 * 180.02562 * 13 12 10 37 37 H 1.09004 * 110.36390 * 143.19122 * 18 5 4 38 38 H 1.08999 * 110.36503 * 265.51479 * 18 5 4 39 39 H 0.96998 * 119.99966 * 266.45290 * 21 19 18 40 40 H 1.07995 * 128.64207 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0831 -0.7864 -1.2074 5 7 3.2494 -1.5470 -0.7354 6 6 4.0005 -2.3785 -1.4845 7 8 3.7296 -2.5526 -2.6538 8 6 5.1803 -3.0871 -0.8706 9 16 5.9798 -4.1226 -2.1216 10 6 7.2853 -4.8116 -1.1596 11 1 7.3884 -4.5436 -0.1185 12 6 8.1813 -5.6988 -1.7398 13 7 9.1563 -6.2139 -1.0211 14 14 8.0034 -6.1618 -3.5407 15 1 8.7851 -5.2140 -4.3751 16 1 8.5123 -7.5410 -3.7499 17 1 6.5715 -6.0983 -3.9291 18 6 3.4652 -1.2447 0.6913 19 6 2.0790 -0.7935 1.2151 20 1 2.1820 -0.1490 2.0882 21 7 1.2294 -1.9487 1.5150 22 6 1.2990 -2.5404 2.7240 23 8 2.0659 -2.1156 3.5651 24 6 0.4395 -3.7101 3.0274 25 6 0.3582 -4.4967 4.2724 26 7 -0.5476 -5.3939 3.9869 27 8 -0.9430 -5.2263 2.8575 28 7 -0.4463 -4.3028 2.2555 29 1 -0.3633 0.4642 0.9168 30 1 -0.3633 0.5618 -0.8605 31 1 -0.3633 -1.0261 -0.0564 32 1 2.3849 -0.0960 -1.9951 33 1 1.3217 -1.4701 -1.5824 34 1 5.8932 -2.3510 -0.4992 35 1 4.8396 -3.7118 -0.0450 36 1 9.7827 -6.8336 -1.4267 37 1 3.7992 -2.1365 1.2217 38 1 4.1930 -0.4410 0.8029 39 1 0.6169 -2.2876 0.8436 40 1 0.9100 -4.3641 5.1911 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071662260.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:14 Heat of formation + Delta-G solvation = 55.639615 kcal Electronic energy + Delta-G solvation = -26915.337228 eV Core-core repulsion = 22862.334022 eV Total energy + Delta-G solvation = -4053.003205 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.33202 -40.94227 -39.49345 -37.78267 -35.27232 -34.90721 -34.31607 -32.90679 -32.45615 -29.68700 -29.49856 -26.51080 -26.32419 -25.58782 -24.54682 -23.31393 -21.68441 -20.50965 -19.56581 -19.43916 -19.03142 -18.15702 -17.70268 -17.08488 -16.71201 -15.92587 -15.57028 -15.52338 -15.05153 -14.84093 -14.79190 -14.41411 -13.98305 -13.80879 -13.43069 -13.27361 -13.08662 -12.84526 -12.67614 -12.54889 -12.34894 -12.14170 -11.80031 -11.75368 -11.48551 -11.27947 -11.25851 -11.21433 -11.02441 -10.90406 -10.63578 -9.89577 -9.85543 -9.55564 -9.02153 -8.67367 -8.53010 -6.94969 -6.30432 -4.02832 0.29266 0.91760 2.09824 2.44577 2.61525 2.86631 2.95243 3.06595 3.13620 3.31614 3.47710 3.48777 3.56152 3.81847 4.08537 4.30488 4.31372 4.33938 4.37823 4.62872 4.75721 4.86060 4.92467 5.00889 5.08429 5.10009 5.14413 5.26958 5.39439 5.41275 5.54349 5.60322 5.69104 5.76690 5.85606 5.96893 6.21308 6.76106 7.41919 7.44189 7.92537 7.97495 8.34925 8.40195 9.15522 10.78814 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010612 B = 0.003192 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.859564 B = 8768.895061 C =10317.209177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 H 0.106 0.894 4 C 0.109 3.891 5 N -0.625 5.625 6 C 0.548 3.452 7 O -0.515 6.515 8 C -0.118 4.118 9 S -0.141 6.141 10 C -0.522 4.522 11 H 0.088 0.912 12 C 0.097 3.903 13 N -0.880 5.880 14 Si 0.856 3.144 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.088 3.912 19 C 0.135 3.865 20 H 0.118 0.882 21 N -0.698 5.698 22 C 0.610 3.390 23 O -0.507 6.507 24 C -0.044 4.044 25 C 0.041 3.959 26 N -0.351 5.351 27 O 0.345 5.655 28 N -0.319 5.319 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.271 0.729 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.410 0.590 40 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.761 12.722 9.557 26.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 H 0.124 0.876 4 C -0.014 4.014 5 N -0.362 5.362 6 C 0.336 3.664 7 O -0.389 6.389 8 C -0.269 4.269 9 S 0.085 5.915 10 C -0.669 4.669 11 H 0.106 0.894 12 C -0.112 4.112 13 N -0.516 5.516 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C -0.036 4.036 19 C 0.030 3.970 20 H 0.136 0.864 21 N -0.351 5.351 22 C 0.393 3.607 23 O -0.380 6.380 24 C -0.210 4.210 25 C -0.145 4.145 26 N -0.074 5.074 27 O 0.118 5.882 28 N -0.039 5.039 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.248 0.752 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -22.205 11.937 7.839 26.401 hybrid contribution 1.013 0.156 0.878 1.350 sum -21.192 12.093 8.717 25.910 Atomic orbital electron populations 1.21733 0.93137 1.02302 1.02907 1.22581 0.97086 1.00051 0.93089 0.87608 1.22001 0.88309 0.94797 0.96281 1.48452 1.30826 1.46033 1.10922 1.19997 0.82745 0.77751 0.85858 1.90714 1.70022 1.62242 1.15903 1.23257 0.97438 1.02254 1.03905 1.84775 1.35586 1.54705 1.16400 1.22301 1.13230 1.31639 0.99774 0.89394 1.24700 0.93764 0.94268 0.98474 1.69935 1.15187 1.29814 1.36664 0.86744 0.81582 0.78739 0.84845 1.19160 1.19883 1.15948 1.22790 0.96648 1.02442 0.81761 1.22258 0.89352 0.86572 0.98780 0.86391 1.45772 1.42683 1.32134 1.14492 1.16422 0.81182 0.80363 0.82766 1.90874 1.37386 1.62747 1.46945 1.26186 1.00330 1.01935 0.92499 1.27781 0.96259 0.89886 1.00592 1.75105 1.12886 1.21297 0.98125 1.85107 1.48905 1.36365 1.17828 1.75393 1.08093 0.99456 1.20942 0.91613 0.91361 0.92436 0.90862 0.91284 0.88492 0.88774 0.91907 0.89602 0.89541 0.75235 0.75455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 8.73 37.16 0.32 -0.34 16 2 C -0.11 -0.65 3.40 -88.78 -0.30 -0.95 16 3 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 4 C 0.11 1.05 6.47 -3.06 -0.02 1.03 16 5 N -0.62 -7.99 3.33 -170.51 -0.57 -8.56 16 6 C 0.55 9.88 7.87 -10.98 -0.09 9.79 16 7 O -0.51 -11.14 16.19 5.56 0.09 -11.05 16 8 C -0.12 -2.34 5.17 36.00 0.19 -2.15 16 9 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 10 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 11 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 12 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 13 N -0.88 -26.65 13.97 55.49 0.78 -25.87 16 14 Si 0.86 21.86 27.74 -169.99 -4.71 17.15 16 15 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 18 C 0.09 0.88 6.38 -2.53 -0.02 0.86 16 19 C 0.14 1.00 3.07 -65.78 -0.20 0.79 16 20 H 0.12 0.77 7.73 -51.93 -0.40 0.37 16 21 N -0.70 -5.66 4.69 -52.53 -0.25 -5.91 16 22 C 0.61 5.90 7.85 -12.13 -0.10 5.81 16 23 O -0.51 -5.99 16.79 5.37 0.09 -5.90 16 24 C -0.04 -0.40 7.56 -80.06 -0.61 -1.01 16 25 C 0.04 0.32 12.63 -14.28 -0.18 0.14 16 26 N -0.35 -3.14 12.22 30.71 0.38 -2.76 16 27 O 0.35 3.14 11.65 27.26 0.32 3.46 16 28 N -0.32 -2.97 12.13 33.49 0.41 -2.56 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.29 6.37 -51.93 -0.33 -0.04 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.70 7.78 -51.93 -0.40 0.30 16 34 H 0.10 1.80 8.14 -51.91 -0.42 1.38 16 35 H 0.09 1.79 7.84 -51.92 -0.41 1.38 16 36 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.09 0.99 7.48 -51.93 -0.39 0.61 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.41 3.12 6.75 -40.82 -0.28 2.85 16 40 H 0.23 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -35.58 360.07 -5.57 -41.14 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -4.74 Total: -0.85 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -0.78 Total: 1.89 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.74 Total: -45.67 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.50 Total: -13.48 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.58 -5.57 -41.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071662260.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.782 kcal (2) G-P(sol) polarization free energy of solvation -35.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds