Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.64259 * 2 1 4 4 C 1.54337 * 110.99946 * 236.92296 * 2 1 3 5 5 N 1.47018 * 107.26210 * 219.60015 * 4 2 1 6 6 C 1.34784 * 125.64699 * 178.85159 * 5 4 2 7 7 O 1.21283 * 119.99649 * 359.71689 * 6 5 4 8 8 C 1.50697 * 119.99774 * 179.44586 * 6 5 4 9 9 S 1.81008 * 109.46759 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99946 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99996 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00252 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00327 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 119.99735 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47351 * 90.00094 * 14 12 10 16 16 H 1.48496 * 109.47299 * 210.00069 * 14 12 10 17 17 H 1.48507 * 109.47281 * 330.00181 * 14 12 10 18 18 C 1.47426 * 108.70612 * 358.58787 * 5 4 2 19 19 C 1.54906 * 104.82959 * 24.35650 * 18 5 4 20 20 H 1.09005 * 111.00459 * 204.92032 * 19 18 5 21 21 N 1.46503 * 111.00676 * 81.06332 * 19 18 5 22 22 C 1.34780 * 119.99395 * 86.45281 * 21 19 18 23 23 O 1.21492 * 120.00516 * 0.02562 * 22 21 19 24 24 C 1.48285 * 119.99311 * 180.02562 * 22 21 19 25 25 C 1.47493 * 128.70769 * 180.02562 * 24 22 21 26 26 N 1.30651 * 102.71352 * 180.02562 * 25 24 22 27 27 O 1.20833 * 109.61842 * 359.97438 * 26 25 24 28 28 N 1.20911 * 115.91258 * 359.69674 * 27 26 25 29 29 H 1.08995 * 109.47245 * 296.85699 * 1 2 3 30 30 H 1.08997 * 109.47049 * 56.85812 * 1 2 3 31 31 H 1.09001 * 109.47016 * 176.85677 * 1 2 3 32 32 H 1.09004 * 109.98978 * 100.12893 * 4 2 1 33 33 H 1.08996 * 109.78305 * 338.96008 * 4 2 1 34 34 H 1.09001 * 109.46809 * 299.99238 * 8 6 5 35 35 H 1.08993 * 109.47525 * 59.99679 * 8 6 5 36 36 H 0.97000 * 120.00223 * 180.02562 * 13 12 10 37 37 H 1.09004 * 110.36390 * 143.19122 * 18 5 4 38 38 H 1.08999 * 110.36503 * 265.51479 * 18 5 4 39 39 H 0.96998 * 119.99966 * 266.45290 * 21 19 18 40 40 H 1.07995 * 128.64207 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0831 -0.7864 -1.2074 5 7 3.2494 -1.5470 -0.7354 6 6 4.0005 -2.3785 -1.4845 7 8 3.7296 -2.5526 -2.6538 8 6 5.1803 -3.0871 -0.8706 9 16 5.9798 -4.1226 -2.1216 10 6 7.2853 -4.8116 -1.1596 11 1 7.3884 -4.5436 -0.1185 12 6 8.1813 -5.6988 -1.7398 13 7 9.1563 -6.2139 -1.0211 14 14 8.0034 -6.1618 -3.5407 15 1 8.7851 -5.2140 -4.3751 16 1 8.5123 -7.5410 -3.7499 17 1 6.5715 -6.0983 -3.9291 18 6 3.4652 -1.2447 0.6913 19 6 2.0790 -0.7935 1.2151 20 1 2.1820 -0.1490 2.0882 21 7 1.2294 -1.9487 1.5150 22 6 1.2990 -2.5404 2.7240 23 8 2.0659 -2.1156 3.5651 24 6 0.4395 -3.7101 3.0274 25 6 0.3582 -4.4967 4.2724 26 7 -0.5476 -5.3939 3.9869 27 8 -0.9430 -5.2263 2.8575 28 7 -0.4463 -4.3028 2.2555 29 1 -0.3633 0.4642 0.9168 30 1 -0.3633 0.5618 -0.8605 31 1 -0.3633 -1.0261 -0.0564 32 1 2.3849 -0.0960 -1.9951 33 1 1.3217 -1.4701 -1.5824 34 1 5.8932 -2.3510 -0.4992 35 1 4.8396 -3.7118 -0.0450 36 1 9.7827 -6.8336 -1.4267 37 1 3.7992 -2.1365 1.2217 38 1 4.1930 -0.4410 0.8029 39 1 0.6169 -2.2876 0.8436 40 1 0.9100 -4.3641 5.1911 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071662260.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = 29.485820 kcal Electronic energy + Delta-G solvation = -26916.471341 eV Core-core repulsion = 22862.334022 eV Total energy + Delta-G solvation = -4054.137319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.00855 -41.78106 -40.55234 -38.85264 -35.98840 -35.59296 -35.21560 -34.71245 -33.66621 -31.07221 -30.30056 -27.94445 -27.23369 -27.04221 -25.23070 -24.15608 -22.40454 -21.17140 -20.83812 -20.12927 -19.75261 -19.63249 -18.81729 -18.10491 -17.89101 -17.16601 -16.97911 -16.48974 -16.28972 -16.03011 -15.64355 -15.60363 -15.33721 -14.93101 -14.55270 -14.43484 -13.95863 -13.80134 -13.68913 -13.55715 -13.37197 -13.21282 -13.04175 -13.03108 -12.74042 -12.47813 -12.40152 -12.04471 -11.90745 -11.89627 -11.81181 -11.65952 -11.20559 -11.12821 -10.61032 -10.53276 -9.74409 -9.05762 -8.55055 -6.27285 -0.42386 0.27770 0.91264 1.28769 1.40584 1.41823 1.44709 1.49980 1.71281 1.97788 2.21913 2.27759 2.41435 2.62285 2.82947 2.83139 3.17171 3.36253 3.64386 3.65164 3.70716 3.80272 4.06029 4.13902 4.27911 4.33471 4.40770 4.45986 4.51803 4.61459 4.71124 4.75750 4.99299 5.05939 5.14903 5.29021 5.35599 5.66804 6.06187 6.07092 6.22682 6.70226 6.89558 6.98611 7.29044 8.57562 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010612 B = 0.003192 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.859564 B = 8768.895061 C =10317.209177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 H 0.132 0.868 4 C 0.102 3.898 5 N -0.612 5.612 6 C 0.549 3.451 7 O -0.559 6.559 8 C -0.104 4.104 9 S -0.169 6.169 10 C -0.532 4.532 11 H 0.059 0.941 12 C 0.048 3.952 13 N -0.916 5.916 14 Si 0.914 3.086 15 H -0.260 1.260 16 H -0.257 1.257 17 H -0.238 1.238 18 C 0.078 3.922 19 C 0.140 3.860 20 H 0.138 0.862 21 N -0.692 5.692 22 C 0.612 3.388 23 O -0.530 6.530 24 C -0.055 4.055 25 C 0.051 3.949 26 N -0.363 5.363 27 O 0.339 5.661 28 N -0.324 5.324 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.278 0.722 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.413 0.587 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.246 14.403 9.810 29.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.150 0.850 4 C -0.020 4.020 5 N -0.347 5.347 6 C 0.336 3.664 7 O -0.437 6.437 8 C -0.255 4.255 9 S 0.057 5.943 10 C -0.680 4.680 11 H 0.078 0.922 12 C -0.158 4.158 13 N -0.553 5.553 14 Si 0.736 3.264 15 H -0.184 1.184 16 H -0.181 1.181 17 H -0.161 1.161 18 C -0.045 4.045 19 C 0.036 3.964 20 H 0.155 0.845 21 N -0.345 5.345 22 C 0.395 3.605 23 O -0.404 6.404 24 C -0.220 4.220 25 C -0.135 4.135 26 N -0.088 5.088 27 O 0.114 5.886 28 N -0.043 5.043 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.126 0.874 39 H 0.251 0.749 40 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -23.729 13.649 8.113 28.551 hybrid contribution 1.408 -0.271 0.944 1.716 sum -22.321 13.378 9.057 27.554 Atomic orbital electron populations 1.21743 0.91817 1.02327 1.04004 1.22575 0.97909 1.00288 0.89968 0.84967 1.22297 0.86858 0.94687 0.98185 1.48346 1.30373 1.44135 1.11837 1.19550 0.82776 0.78555 0.85495 1.90693 1.71232 1.64200 1.17581 1.23203 0.98376 1.01785 1.02116 1.84649 1.34886 1.56151 1.18603 1.22433 1.14577 1.31937 0.99017 0.92230 1.25555 0.93429 0.94183 1.02598 1.70012 1.16093 1.30637 1.38603 0.85873 0.81467 0.79289 0.79786 1.18447 1.18140 1.16147 1.23095 0.99120 1.02558 0.79716 1.22364 0.87676 0.86435 0.99968 0.84489 1.45821 1.42443 1.32150 1.14065 1.16473 0.80847 0.80304 0.82882 1.90862 1.38392 1.63500 1.47688 1.26266 1.00494 1.02152 0.93137 1.28275 0.95486 0.88729 1.00973 1.75109 1.13596 1.21939 0.98125 1.85103 1.49084 1.36392 1.18018 1.75369 1.08216 0.99562 1.21190 0.90376 0.90418 0.92997 0.90784 0.91769 0.87249 0.88166 0.91258 0.91260 0.87352 0.74882 0.72809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 8.73 71.98 0.63 -0.22 16 2 C -0.09 -0.74 3.40 -9.60 -0.03 -0.77 16 3 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 4 C 0.10 1.74 6.47 86.73 0.56 2.31 16 5 N -0.61 -14.73 3.33 -811.77 -2.70 -17.43 16 6 C 0.55 19.50 7.87 87.65 0.69 20.19 16 7 O -0.56 -24.20 16.19 -3.04 -0.05 -24.25 16 8 C -0.10 -4.12 5.17 71.24 0.37 -3.75 16 9 S -0.17 -8.74 18.55 -56.49 -1.05 -9.79 16 10 C -0.53 -31.51 10.04 67.95 0.68 -30.83 16 11 H 0.06 3.74 8.03 -2.91 -0.02 3.72 16 12 C 0.05 2.84 5.50 84.86 0.47 3.31 16 13 N -0.92 -56.20 13.97 21.65 0.30 -55.89 16 14 Si 0.91 45.27 27.74 68.60 1.90 47.18 16 15 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 16 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 17 H -0.24 -11.77 6.74 99.48 0.67 -11.10 16 18 C 0.08 1.40 6.38 86.85 0.55 1.95 16 19 C 0.14 1.66 3.07 46.38 0.14 1.80 16 20 H 0.14 1.27 7.73 -2.38 -0.02 1.25 16 21 N -0.69 -9.88 4.69 -438.41 -2.06 -11.94 16 22 C 0.61 10.92 7.85 86.92 0.68 11.61 16 23 O -0.53 -11.67 16.79 -3.69 -0.06 -11.73 16 24 C -0.06 -0.94 7.56 44.30 0.34 -0.61 16 25 C 0.05 0.73 12.63 87.31 1.10 1.83 16 26 N -0.36 -6.16 12.22 -61.43 -0.75 -6.91 16 27 O 0.34 6.00 11.65 140.85 1.64 7.64 16 28 N -0.32 -5.78 12.13 -52.06 -0.63 -6.41 16 29 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.05 0.39 6.37 -2.39 -0.02 0.37 16 32 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.06 1.20 7.78 -2.39 -0.02 1.18 16 34 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 35 H 0.10 3.83 7.84 -2.40 -0.02 3.81 16 36 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 37 H 0.07 1.52 7.48 -2.38 -0.02 1.50 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.41 5.56 6.75 -92.71 -0.63 4.94 16 40 H 0.26 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -78.36 360.07 3.16 -75.20 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.44 Total: 7.52 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 6.18 Total: 6.82 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -5.84 Total: -98.59 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: 1.53 Total: -28.34 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.18 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.05 Total: -9.79 kcal Total: -78.36 3.16 -75.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071662260.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.687 kcal (2) G-P(sol) polarization free energy of solvation -78.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds