Wall clock time and date at job start Sat Apr 11 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21279 * 120.00398 * 2 1 4 4 N 1.34783 * 120.00228 * 179.97438 * 2 1 3 5 5 C 1.38896 * 120.00360 * 180.02562 * 4 2 1 6 6 N 1.29512 * 125.27016 * 179.97438 * 5 4 2 7 7 C 1.33634 * 115.66764 * 180.02562 * 6 5 4 8 8 C 1.47202 * 122.50063 * 179.97438 * 7 6 5 9 9 O 1.21646 * 120.00078 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99765 * 0.02562 * 8 7 6 11 11 C 1.46505 * 119.99500 * 179.97438 * 10 8 7 12 12 H 1.09002 * 110.64189 * 34.30160 * 11 10 8 13 13 C 1.54321 * 110.72218 * 271.15678 * 11 10 8 14 14 N 1.47019 * 107.27531 * 219.26939 * 13 11 10 15 15 C 1.36934 * 125.65046 * 178.97751 * 14 13 11 16 16 H 1.08004 * 119.99872 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99970 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00204 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99812 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47425 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47247 * 120.00114 * 19 17 15 22 22 H 1.48501 * 109.46963 * 239.99435 * 19 17 15 23 23 C 1.47431 * 108.70142 * 358.94050 * 14 13 11 24 24 C 1.55157 * 110.71610 * 157.44358 * 11 10 8 25 25 H 1.09001 * 111.00741 * 35.97140 * 24 11 10 26 26 O 1.42905 * 111.00350 * 272.11375 * 24 11 10 27 27 C 1.34891 * 114.99672 * 0.24785 * 7 6 5 28 28 S 1.70974 * 109.19538 * 359.63214 * 27 7 6 29 29 H 1.08994 * 109.47396 * 240.00161 * 1 2 3 30 30 H 1.08995 * 109.47275 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.46865 * 120.00019 * 1 2 3 32 32 H 0.97003 * 119.99209 * 0.02562 * 4 2 1 33 33 H 0.96996 * 120.00112 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.88480 * 338.69050 * 13 11 10 35 35 H 1.09003 * 109.88132 * 99.69456 * 13 11 10 36 36 H 0.96999 * 120.00486 * 180.02562 * 18 17 15 37 37 H 1.08999 * 110.36190 * 142.96411 * 23 14 13 38 38 H 1.08999 * 110.36356 * 265.28933 * 23 14 13 39 39 H 0.96704 * 113.99865 * 180.02562 * 26 24 11 40 40 H 1.08003 * 125.39573 * 179.75040 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5699 -1.1673 0.0011 6 7 4.3177 -2.2247 0.0021 7 6 5.6353 -2.0018 0.0030 8 6 6.6222 -3.0939 0.0047 9 8 7.8117 -2.8389 0.0059 10 7 6.2080 -4.3765 0.0049 11 6 7.1903 -5.4634 0.0061 12 1 8.0727 -5.1833 0.5815 13 6 7.5791 -5.8496 -1.4365 14 7 7.7055 -7.3138 -1.4775 15 6 8.0186 -8.0572 -2.5841 16 1 8.1962 -7.5682 -3.5306 17 6 8.1068 -9.4392 -2.4896 18 7 7.8899 -10.0352 -1.3363 19 14 8.5348 -10.4532 -3.9989 20 1 8.7300 -9.5511 -5.1623 21 1 9.7851 -11.2137 -3.7463 22 1 7.4289 -11.4011 -4.2883 23 6 7.4400 -7.8491 -0.1297 24 6 6.5635 -6.7690 0.5629 25 1 5.5198 -6.8606 0.2621 26 8 6.6923 -6.8333 1.9847 27 6 5.9934 -0.7013 0.0080 28 16 4.5860 0.2694 0.0013 29 1 -0.3634 -0.5138 0.8899 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8901 32 1 1.6958 -2.0073 0.0005 33 1 5.2596 -4.5798 0.0036 34 1 6.8026 -5.5250 -2.1293 35 1 8.5292 -5.3856 -1.7012 36 1 7.9519 -11.0009 -1.2701 37 1 6.8973 -8.7920 -0.1963 38 1 8.3743 -7.9857 0.4149 39 1 6.3153 -7.6322 2.3781 40 1 7.0083 -0.3319 0.0133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077291549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:38 Heat of formation + Delta-G solvation = -34.896265 kcal Electronic energy + Delta-G solvation = -26559.722393 eV Core-core repulsion = 22502.793257 eV Total energy + Delta-G solvation = -4056.929136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.91592 -40.20239 -38.80216 -37.57808 -35.37170 -35.05664 -34.01281 -31.71353 -31.26148 -29.55508 -28.51949 -27.15510 -25.53404 -24.28574 -22.76266 -21.87259 -20.66854 -20.11458 -19.77169 -18.84668 -17.55642 -17.26206 -17.13991 -16.75739 -16.43319 -16.34430 -15.51780 -15.14933 -14.88788 -14.66155 -14.16657 -14.09064 -13.72483 -13.50335 -13.30748 -13.20538 -12.94212 -12.88666 -12.31056 -12.22111 -11.89718 -11.49270 -11.43378 -11.25399 -10.97771 -10.85053 -10.67379 -10.25569 -10.15799 -9.99907 -9.90029 -9.70926 -9.65007 -9.26891 -8.79810 -8.71856 -8.52826 -6.91109 -5.71706 -3.13990 0.34823 0.72204 1.50016 1.51043 2.10970 2.19218 3.37167 3.40793 3.44027 3.46601 3.47106 3.97632 4.21307 4.41702 4.59781 4.63742 4.69306 5.03582 5.13219 5.20109 5.29397 5.37353 5.42748 5.65601 5.66506 5.75313 5.87921 6.11340 6.21537 6.31188 6.50400 6.69130 6.93544 7.20315 7.22617 7.33206 7.53925 7.70639 7.79952 8.11878 8.26039 8.39535 9.14590 9.74896 10.37612 11.32642 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017724 B = 0.002370 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.364667 B =11813.532256 C =12093.961743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.512 3.488 3 O -0.511 6.511 4 N -0.622 5.622 5 C 0.246 3.754 6 N -0.474 5.474 7 C 0.034 3.966 8 C 0.591 3.409 9 O -0.534 6.534 10 N -0.695 5.695 11 C 0.140 3.860 12 H 0.102 0.898 13 C 0.130 3.870 14 N -0.600 5.600 15 C -0.220 4.220 16 H 0.081 0.919 17 C -0.012 4.012 18 N -0.924 5.924 19 Si 0.918 3.082 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.131 3.869 24 C 0.067 3.933 25 H 0.062 0.938 26 O -0.565 6.565 27 C -0.260 4.260 28 S 0.270 5.730 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.427 0.573 33 H 0.406 0.594 34 H 0.031 0.969 35 H 0.035 0.965 36 H 0.253 0.747 37 H 0.113 0.887 38 H 0.026 0.974 39 H 0.377 0.623 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.640 19.161 5.501 26.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.299 3.701 3 O -0.385 6.385 4 N -0.273 5.273 5 C -0.123 4.123 6 N -0.198 5.198 7 C -0.100 4.100 8 C 0.374 3.626 9 O -0.411 6.411 10 N -0.344 5.344 11 C 0.035 3.965 12 H 0.120 0.880 13 C 0.003 3.997 14 N -0.328 5.328 15 C -0.348 4.348 16 H 0.099 0.901 17 C -0.207 4.207 18 N -0.573 5.573 19 Si 0.748 3.252 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.217 1.217 23 C 0.005 3.995 24 C 0.007 3.993 25 H 0.080 0.920 26 O -0.370 6.370 27 C -0.403 4.403 28 S 0.521 5.479 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.266 0.734 33 H 0.242 0.758 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.131 0.869 38 H 0.044 0.956 39 H 0.224 0.776 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -16.541 21.011 5.336 27.268 hybrid contribution -0.068 -2.475 -0.689 2.570 sum -16.609 18.535 4.647 25.318 Atomic orbital electron populations 1.21893 0.88490 1.06782 1.05408 1.21360 0.91724 0.82079 0.74922 1.90695 1.69641 1.30679 1.47470 1.42870 1.01547 1.11609 1.71242 1.24296 0.89777 0.93793 1.04434 1.67019 1.03344 1.29463 1.19953 1.19909 0.88511 0.93760 1.07822 1.17092 0.86754 0.81999 0.76772 1.90826 1.15859 1.83707 1.50683 1.45800 1.10786 1.04833 1.73025 1.22079 0.92162 0.84677 0.97537 0.88009 1.21626 0.98643 0.86802 0.92635 1.44295 1.82590 0.99270 1.06619 1.19160 1.39574 0.88435 0.87656 0.90136 1.24804 1.02099 0.96405 0.97411 1.69744 1.56296 1.08645 1.22651 0.85945 0.77639 0.80051 0.81554 1.20457 1.21658 1.21713 1.22630 0.96766 0.96046 0.84068 1.23721 0.98829 0.96317 0.80477 0.91982 1.86418 1.84193 1.46172 1.20170 1.26923 1.07800 0.97678 1.07915 1.84835 0.91139 1.05360 1.66532 0.88298 0.87771 0.88280 0.73367 0.75822 0.95133 0.94732 0.93655 0.86942 0.95604 0.77616 0.79199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.27 10.32 36.00 0.37 0.10 16 2 C 0.51 3.21 7.90 -10.99 -0.09 3.12 16 3 O -0.51 -5.03 14.59 5.56 0.08 -4.94 16 4 N -0.62 -4.23 5.40 -11.91 -0.06 -4.29 16 5 C 0.25 2.63 8.36 -87.54 -0.73 1.89 16 6 N -0.47 -6.11 10.11 -10.51 -0.11 -6.21 16 7 C 0.03 0.50 6.66 -84.63 -0.56 -0.06 16 8 C 0.59 10.42 7.79 -12.62 -0.10 10.32 16 9 O -0.53 -10.93 16.34 5.24 0.09 -10.85 16 10 N -0.69 -11.95 5.11 -53.17 -0.27 -12.22 16 11 C 0.14 2.80 3.00 -66.09 -0.20 2.60 16 12 H 0.10 2.22 7.62 -51.93 -0.40 1.82 16 13 C 0.13 2.93 6.99 -3.07 -0.02 2.91 16 14 N -0.60 -15.59 3.40 -169.76 -0.58 -16.17 16 15 C -0.22 -6.16 10.27 -15.06 -0.15 -6.32 16 16 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 17 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 18 N -0.92 -26.51 10.09 55.49 0.56 -25.95 16 19 Si 0.92 21.99 29.55 -169.99 -5.02 16.97 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 C 0.13 3.16 5.65 -2.26 -0.01 3.14 16 24 C 0.07 1.30 4.07 -24.32 -0.10 1.20 16 25 H 0.06 1.12 8.01 -51.93 -0.42 0.71 16 26 O -0.56 -9.99 13.48 -35.23 -0.48 -10.47 16 27 C -0.26 -3.26 10.55 29.54 0.31 -2.95 16 28 S 0.27 2.81 20.29 -107.50 -2.18 0.63 16 29 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.10 0.18 8.12 -51.93 -0.42 -0.24 16 31 H 0.10 0.00 8.14 -51.92 -0.42 -0.42 16 32 H 0.43 1.71 8.82 -40.82 -0.36 1.35 16 33 H 0.41 6.24 8.02 -40.82 -0.33 5.92 16 34 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.11 2.95 5.87 -51.93 -0.30 2.64 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.38 5.04 9.12 45.56 0.42 5.46 16 40 H 0.19 2.20 7.99 -52.48 -0.42 1.78 16 LS Contribution 357.04 15.07 5.38 5.38 Total: -1.00 -36.07 357.04 -7.85 -43.93 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -3.88 Total: 8.67 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: -1.38 Total: 15.53 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -0.46 Total: -64.85 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.31 Total: -26.26 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -2.18 Total: 0.63 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.07 -7.85 -43.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077291549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.031 kcal (2) G-P(sol) polarization free energy of solvation -36.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds