Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21279 * 120.00398 * 2 1 4 4 N 1.34783 * 120.00228 * 179.97438 * 2 1 3 5 5 C 1.38896 * 120.00360 * 180.02562 * 4 2 1 6 6 N 1.29512 * 125.27016 * 179.97438 * 5 4 2 7 7 C 1.33634 * 115.66764 * 180.02562 * 6 5 4 8 8 C 1.47202 * 122.50063 * 179.97438 * 7 6 5 9 9 O 1.21646 * 120.00078 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99765 * 0.02562 * 8 7 6 11 11 C 1.46505 * 119.99500 * 179.97438 * 10 8 7 12 12 H 1.09002 * 110.64189 * 34.30160 * 11 10 8 13 13 C 1.54321 * 110.72218 * 271.15678 * 11 10 8 14 14 N 1.47019 * 107.27531 * 219.26939 * 13 11 10 15 15 C 1.36934 * 125.65046 * 178.97751 * 14 13 11 16 16 H 1.08004 * 119.99872 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99970 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00204 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99812 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47425 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47247 * 120.00114 * 19 17 15 22 22 H 1.48501 * 109.46963 * 239.99435 * 19 17 15 23 23 C 1.47431 * 108.70142 * 358.94050 * 14 13 11 24 24 C 1.55157 * 110.71610 * 157.44358 * 11 10 8 25 25 H 1.09001 * 111.00741 * 35.97140 * 24 11 10 26 26 O 1.42905 * 111.00350 * 272.11375 * 24 11 10 27 27 C 1.34891 * 114.99672 * 0.24785 * 7 6 5 28 28 S 1.70974 * 109.19538 * 359.63214 * 27 7 6 29 29 H 1.08994 * 109.47396 * 240.00161 * 1 2 3 30 30 H 1.08995 * 109.47275 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.46865 * 120.00019 * 1 2 3 32 32 H 0.97003 * 119.99209 * 0.02562 * 4 2 1 33 33 H 0.96996 * 120.00112 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.88480 * 338.69050 * 13 11 10 35 35 H 1.09003 * 109.88132 * 99.69456 * 13 11 10 36 36 H 0.96999 * 120.00486 * 180.02562 * 18 17 15 37 37 H 1.08999 * 110.36190 * 142.96411 * 23 14 13 38 38 H 1.08999 * 110.36356 * 265.28933 * 23 14 13 39 39 H 0.96704 * 113.99865 * 180.02562 * 26 24 11 40 40 H 1.08003 * 125.39573 * 179.75040 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5699 -1.1673 0.0011 6 7 4.3177 -2.2247 0.0021 7 6 5.6353 -2.0018 0.0030 8 6 6.6222 -3.0939 0.0047 9 8 7.8117 -2.8389 0.0059 10 7 6.2080 -4.3765 0.0049 11 6 7.1903 -5.4634 0.0061 12 1 8.0727 -5.1833 0.5815 13 6 7.5791 -5.8496 -1.4365 14 7 7.7055 -7.3138 -1.4775 15 6 8.0186 -8.0572 -2.5841 16 1 8.1962 -7.5682 -3.5306 17 6 8.1068 -9.4392 -2.4896 18 7 7.8899 -10.0352 -1.3363 19 14 8.5348 -10.4532 -3.9989 20 1 8.7300 -9.5511 -5.1623 21 1 9.7851 -11.2137 -3.7463 22 1 7.4289 -11.4011 -4.2883 23 6 7.4400 -7.8491 -0.1297 24 6 6.5635 -6.7690 0.5629 25 1 5.5198 -6.8606 0.2621 26 8 6.6923 -6.8333 1.9847 27 6 5.9934 -0.7013 0.0080 28 16 4.5860 0.2694 0.0013 29 1 -0.3634 -0.5138 0.8899 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8901 32 1 1.6958 -2.0073 0.0005 33 1 5.2596 -4.5798 0.0036 34 1 6.8026 -5.5250 -2.1293 35 1 8.5292 -5.3856 -1.7012 36 1 7.9519 -11.0009 -1.2701 37 1 6.8973 -8.7920 -0.1963 38 1 8.3743 -7.9857 0.4149 39 1 6.3153 -7.6322 2.3781 40 1 7.0083 -0.3319 0.0133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077291549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = -65.499028 kcal Electronic energy + Delta-G solvation = -26561.049428 eV Core-core repulsion = 22502.793257 eV Total energy + Delta-G solvation = -4058.256171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.77066 -41.19089 -40.09575 -39.07678 -36.71692 -36.05577 -35.65608 -33.64120 -31.86468 -30.39338 -30.12831 -28.90721 -26.96803 -25.85133 -23.79126 -22.58070 -22.44120 -21.76054 -21.00859 -19.75801 -19.06453 -18.58402 -18.14415 -17.85907 -17.63256 -17.17730 -17.05555 -16.53661 -16.28506 -15.78468 -15.58072 -15.22456 -15.02314 -14.94252 -14.75222 -14.34449 -14.03605 -13.75518 -13.42023 -13.25087 -13.19399 -13.12991 -13.08177 -12.84440 -12.75873 -12.21427 -12.03694 -11.95412 -11.53056 -11.47079 -11.25382 -11.11058 -10.92986 -10.78930 -10.52307 -10.28435 -9.43525 -8.99175 -7.83156 -5.29736 -0.56268 -0.10083 0.58256 0.61178 1.46762 1.47311 1.48091 1.48389 1.58819 2.04873 2.23494 2.46353 3.04533 3.18034 3.28749 3.59045 3.70351 3.79926 3.99807 4.07298 4.13776 4.18371 4.39056 4.50051 4.54250 4.56100 4.67913 4.80300 4.87235 4.92545 5.15322 5.34558 5.36473 5.42806 5.65812 5.74488 6.19364 6.28253 6.54239 6.71928 6.85134 7.02377 7.04656 7.66791 8.29530 9.19001 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017724 B = 0.002370 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.364667 B =11813.532256 C =12093.961743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.510 3.490 3 O -0.548 6.548 4 N -0.611 5.611 5 C 0.246 3.754 6 N -0.488 5.488 7 C 0.012 3.988 8 C 0.589 3.411 9 O -0.570 6.570 10 N -0.685 5.685 11 C 0.153 3.847 12 H 0.081 0.919 13 C 0.132 3.868 14 N -0.618 5.618 15 C -0.244 4.244 16 H 0.081 0.919 17 C -0.061 4.061 18 N -0.946 5.946 19 Si 0.985 3.015 20 H -0.270 1.270 21 H -0.292 1.292 22 H -0.285 1.285 23 C 0.136 3.864 24 C 0.092 3.908 25 H 0.086 0.914 26 O -0.567 6.567 27 C -0.263 4.263 28 S 0.309 5.691 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.441 0.559 33 H 0.418 0.582 34 H 0.038 0.962 35 H 0.018 0.982 36 H 0.251 0.749 37 H 0.093 0.907 38 H -0.006 1.006 39 H 0.398 0.602 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.431 20.033 5.324 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.300 3.700 3 O -0.425 6.425 4 N -0.264 5.264 5 C -0.125 4.125 6 N -0.212 5.212 7 C -0.122 4.122 8 C 0.374 3.626 9 O -0.450 6.450 10 N -0.336 5.336 11 C 0.047 3.953 12 H 0.099 0.901 13 C 0.006 3.994 14 N -0.346 5.346 15 C -0.372 4.372 16 H 0.098 0.902 17 C -0.254 4.254 18 N -0.596 5.596 19 Si 0.813 3.187 20 H -0.194 1.194 21 H -0.219 1.219 22 H -0.211 1.211 23 C 0.010 3.990 24 C 0.032 3.968 25 H 0.104 0.896 26 O -0.374 6.374 27 C -0.407 4.407 28 S 0.561 5.439 29 H 0.141 0.859 30 H 0.124 0.876 31 H 0.140 0.860 32 H 0.284 0.716 33 H 0.255 0.745 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.012 0.988 39 H 0.248 0.752 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -19.407 21.880 5.178 29.701 hybrid contribution 0.728 -2.642 -0.598 2.805 sum -18.679 19.238 4.579 27.202 Atomic orbital electron populations 1.21987 0.84371 1.07636 1.07570 1.22359 0.93386 0.81036 0.73181 1.90671 1.70576 1.31972 1.49251 1.43081 0.99861 1.12866 1.70587 1.24593 0.91404 0.93484 1.02993 1.66960 1.02597 1.30290 1.21311 1.19523 0.88949 0.93160 1.10600 1.17521 0.86937 0.82498 0.75596 1.90798 1.17618 1.84270 1.52306 1.45600 1.10743 1.04218 1.72992 1.21658 0.92313 0.85809 0.95494 0.90079 1.21648 0.98050 0.85110 0.94627 1.44540 1.82593 1.00653 1.06800 1.19476 1.40103 0.89179 0.88438 0.90163 1.25647 1.02111 0.97336 1.00329 1.69955 1.56644 1.08653 1.24310 0.84920 0.77041 0.78304 0.78461 1.19408 1.21908 1.21128 1.22451 0.95878 0.97019 0.83688 1.23321 0.98726 0.93726 0.81065 0.89634 1.86390 1.84597 1.47640 1.18823 1.27132 1.09203 0.97659 1.06702 1.84810 0.89436 1.04197 1.65461 0.85909 0.87616 0.86015 0.71631 0.74478 0.94414 0.96389 0.93899 0.88916 0.98821 0.75175 0.78941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.06 10.32 71.23 0.74 0.80 16 2 C 0.51 5.03 7.90 87.65 0.69 5.72 16 3 O -0.55 -9.72 14.59 -3.03 -0.04 -9.76 16 4 N -0.61 -6.73 5.40 -309.99 -1.67 -8.41 16 5 C 0.25 4.79 8.36 179.27 1.50 6.29 16 6 N -0.49 -11.93 10.11 -187.17 -1.89 -13.82 16 7 C 0.01 0.35 6.66 40.46 0.27 0.62 16 8 C 0.59 20.95 7.79 86.60 0.67 21.63 16 9 O -0.57 -24.01 16.34 -4.18 -0.07 -24.08 16 10 N -0.69 -23.37 5.11 -440.35 -2.25 -25.62 16 11 C 0.15 6.17 3.00 46.18 0.14 6.31 16 12 H 0.08 3.64 7.62 -2.39 -0.02 3.62 16 13 C 0.13 6.09 6.99 86.73 0.61 6.70 16 14 N -0.62 -32.85 3.40 -691.01 -2.35 -35.20 16 15 C -0.24 -13.85 10.27 84.03 0.86 -12.99 16 16 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 17 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 18 N -0.95 -55.11 10.09 21.65 0.22 -54.89 16 19 Si 0.98 45.38 29.55 68.60 2.03 47.40 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 C 0.14 6.69 5.65 87.02 0.49 7.19 16 24 C 0.09 3.54 4.07 32.16 0.13 3.67 16 25 H 0.09 2.93 8.01 -2.39 -0.02 2.91 16 26 O -0.57 -19.41 13.48 -148.98 -2.01 -21.42 16 27 C -0.26 -6.47 10.55 67.05 0.71 -5.77 16 28 S 0.31 6.02 20.29 -56.49 -1.15 4.87 16 29 H 0.12 -0.56 8.14 -2.39 -0.02 -0.58 16 30 H 0.11 0.02 8.12 -2.39 -0.02 0.00 16 31 H 0.12 -0.52 8.14 -2.38 -0.02 -0.54 16 32 H 0.44 2.20 8.82 -92.71 -0.82 1.38 16 33 H 0.42 12.33 8.02 -92.71 -0.74 11.58 16 34 H 0.04 1.68 8.03 -2.39 -0.02 1.66 16 35 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 37 H 0.09 4.97 5.87 -2.39 -0.01 4.96 16 38 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.40 9.97 9.12 -74.05 -0.68 9.30 16 40 H 0.19 4.48 7.99 -2.91 -0.02 4.45 16 Total: -1.00 -79.85 357.04 -3.01 -82.86 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -1.10 Total: 20.90 kcal Atomic # 6 Polarization: 29.89 SS G_CDS: 7.27 Total: 37.17 kcal Atomic # 7 Polarization: -130.00 SS G_CDS: -7.95 Total: -137.94 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -2.12 Total: -55.26 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: 6.02 SS G_CDS: -1.15 Total: 4.87 kcal Total: -79.85 -3.01 -82.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077291549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.364 kcal (2) G-P(sol) polarization free energy of solvation -79.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds