Wall clock time and date at job start Sat Apr 11 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00456 * 2 1 4 4 H 1.48507 * 109.47081 * 264.98937 * 3 2 1 5 5 H 1.48502 * 109.47308 * 144.98913 * 3 2 1 6 6 H 1.48499 * 109.47100 * 24.98684 * 3 2 1 7 7 C 1.38812 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00054 * 187.37604 * 7 2 1 9 9 N 1.36941 * 120.00565 * 7.38012 * 7 2 1 10 10 C 1.47021 * 125.64137 * 6.32996 * 9 7 2 11 11 C 1.54340 * 107.26384 * 178.85109 * 10 9 7 12 12 H 1.09001 * 110.50937 * 96.45359 * 11 10 9 13 13 O 1.42896 * 111.00357 * 219.60371 * 11 10 9 14 14 C 1.55153 * 103.01975 * 338.14806 * 11 10 9 15 15 H 1.09002 * 111.00288 * 277.22868 * 14 11 10 16 16 N 1.46497 * 111.03951 * 153.39185 * 14 11 10 17 17 C 1.34773 * 120.00358 * 161.32679 * 16 14 11 18 18 O 1.21576 * 119.99833 * 0.02562 * 17 16 14 19 19 C 1.47670 * 120.00180 * 180.02562 * 17 16 14 20 20 N 1.31823 * 126.46164 * 0.02877 * 19 17 16 21 21 N 1.28463 * 110.13622 * 179.97438 * 20 19 17 22 22 H 0.96998 * 124.93555 * 179.97438 * 21 20 19 23 23 C 1.35641 * 110.13323 * 359.97438 * 21 20 19 24 24 C 1.50698 * 126.43554 * 179.97438 * 23 21 20 25 25 C 1.52996 * 117.49777 * 8.72584 * 24 23 21 26 26 C 1.53001 * 117.50074 * 300.06379 * 24 23 21 27 27 C 1.35461 * 107.12783 * 359.72536 * 23 21 20 28 28 Cl 1.73608 * 127.23649 * 180.25472 * 27 23 21 29 29 C 1.47414 * 125.65304 * 186.64665 * 9 7 2 30 30 H 0.97004 * 119.99432 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.88851 * 298.40020 * 10 9 7 32 32 H 1.09007 * 109.88284 * 59.56743 * 10 9 7 33 33 H 0.96698 * 114.00012 * 293.78373 * 13 11 10 34 34 H 0.97001 * 119.99529 * 341.33230 * 16 14 11 35 35 H 1.08998 * 115.55303 * 154.39162 * 24 23 21 36 36 H 1.09000 * 117.50221 * 359.97438 * 25 24 23 37 37 H 1.09002 * 117.49826 * 145.01873 * 25 24 23 38 38 H 1.09001 * 117.49888 * 214.97959 * 26 24 23 39 39 H 1.08997 * 117.49710 * 359.97438 * 26 24 23 40 40 H 1.09003 * 110.36883 * 322.92426 * 29 9 7 41 41 H 1.09002 * 110.37021 * 85.24693 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6037 1.9851 -1.3948 5 1 3.4909 1.4729 0.8033 6 1 1.3988 2.6809 0.5914 7 6 2.0101 -1.2022 0.0005 8 1 3.0835 -1.2061 0.1206 9 7 1.3339 -2.3833 -0.1513 10 6 -0.0986 -2.5176 -0.4534 11 6 -0.4047 -4.0266 -0.5603 12 1 -0.7972 -4.4045 0.3838 13 8 -1.3183 -4.2896 -1.6271 14 6 0.9858 -4.6447 -0.8634 15 1 1.2192 -4.5792 -1.9261 16 7 1.0577 -6.0317 -0.3974 17 6 2.0068 -6.8570 -0.8816 18 8 2.8036 -6.4502 -1.7048 19 6 2.0789 -8.2553 -0.4123 20 7 1.2845 -8.8272 0.4706 21 7 1.6279 -10.0526 0.6461 22 1 1.1883 -10.6717 1.2497 23 6 2.6946 -10.3550 -0.1353 24 6 3.3944 -11.6870 -0.2181 25 6 2.7440 -12.8724 0.4978 26 6 4.0166 -12.2392 1.0660 27 6 3.0091 -9.2363 -0.8315 28 17 4.2877 -9.0447 -1.9901 29 6 1.9203 -3.7306 -0.0323 30 1 -0.4849 0.8401 0.0004 31 1 -0.6897 -2.0733 0.3473 32 1 -0.3254 -2.0274 -1.4002 33 1 -2.2025 -3.9242 -1.4867 34 1 0.4221 -6.3561 0.2596 35 1 3.9130 -11.8883 -1.1555 36 1 1.8101 -12.6888 1.0291 37 1 2.8350 -13.8535 0.0317 38 1 4.9443 -12.8040 0.9733 39 1 3.9201 -11.6388 1.9705 40 1 2.9289 -3.7432 -0.4456 41 1 1.9327 -4.0483 1.0103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077302817.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:42 Heat of formation + Delta-G solvation = 44.568933 kcal Electronic energy + Delta-G solvation = -26785.464742 eV Core-core repulsion = 22729.937770 eV Total energy + Delta-G solvation = -4055.526973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.10396 -39.45355 -37.84342 -37.60235 -36.57625 -35.03298 -34.00204 -32.18877 -31.53159 -30.81291 -28.37423 -27.06821 -24.90080 -24.18992 -23.32879 -22.95682 -21.44999 -20.58907 -20.28811 -19.77946 -18.30743 -17.28479 -16.95653 -16.53770 -16.35503 -16.05075 -15.62611 -15.01097 -14.65839 -14.46425 -14.35967 -13.94655 -13.88895 -13.15812 -12.90577 -12.64772 -12.42498 -12.22941 -12.21282 -12.02735 -11.70761 -11.54138 -11.42135 -11.19726 -11.13492 -10.88779 -10.78590 -10.77509 -10.15674 -9.92958 -9.84887 -9.75656 -9.62375 -9.31266 -8.95122 -8.77990 -8.59032 -6.86124 -5.72163 -3.08089 1.22987 1.53609 1.82247 2.60648 3.21229 3.25401 3.42569 3.43398 3.47947 3.49161 3.86908 4.10815 4.23864 4.34047 4.47604 4.48591 4.66331 4.90734 4.97561 5.12695 5.21828 5.27404 5.40781 5.47027 5.48524 5.61510 5.63199 5.72255 5.86589 6.13182 6.18319 6.45625 6.56817 6.68541 6.93442 7.33563 7.34616 7.50943 7.73686 7.79215 8.14045 8.21556 8.39863 9.18192 9.78993 10.42579 11.38395 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.021112 B = 0.002459 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.971648 B =11384.010298 C =11903.612118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.287 1.287 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.080 0.920 9 N -0.598 5.598 10 C 0.149 3.851 11 C 0.070 3.930 12 H 0.059 0.941 13 O -0.563 6.563 14 C 0.140 3.860 15 H 0.105 0.895 16 N -0.700 5.700 17 C 0.597 3.403 18 O -0.512 6.512 19 C 0.014 3.986 20 N -0.241 5.241 21 N -0.376 5.376 22 H 0.449 0.551 23 C 0.059 3.941 24 C -0.091 4.091 25 C -0.174 4.174 26 C -0.163 4.163 27 C -0.094 4.094 28 Cl -0.003 7.003 29 C 0.130 3.870 30 H 0.253 0.747 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.376 0.624 34 H 0.403 0.597 35 H 0.136 0.864 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.053 0.947 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.749 -27.777 2.772 27.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.098 0.902 9 N -0.326 5.326 10 C 0.024 3.976 11 C 0.010 3.990 12 H 0.077 0.923 13 O -0.368 6.368 14 C 0.035 3.965 15 H 0.123 0.877 16 N -0.350 5.350 17 C 0.379 3.621 18 O -0.384 6.384 19 C -0.148 4.148 20 N -0.076 5.076 21 N -0.091 5.091 22 H 0.295 0.705 23 C -0.067 4.067 24 C -0.110 4.110 25 C -0.212 4.212 26 C -0.200 4.200 27 C -0.131 4.131 28 Cl 0.026 6.974 29 C 0.002 3.998 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.223 0.777 34 H 0.237 0.763 35 H 0.153 0.847 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.002 -27.238 2.481 27.424 hybrid contribution 0.050 0.516 0.382 0.644 sum 2.052 -26.722 2.862 26.953 Atomic orbital electron populations 1.69913 1.04973 1.25200 1.56965 1.24815 0.95735 0.97817 1.02102 0.86088 0.78548 0.83086 0.77758 1.21452 1.20652 1.21730 1.19081 0.91036 0.82316 1.43036 0.90172 1.44238 1.05018 0.99906 1.83448 1.21870 0.86485 0.88010 1.01258 1.23437 0.88508 0.98446 0.88598 0.92298 1.86465 1.24856 1.80045 1.45441 1.22285 0.95034 0.78500 1.00676 0.87718 1.45740 1.32929 1.11685 1.44685 1.16719 0.81711 0.82111 0.81526 1.90865 1.40165 1.75165 1.32220 1.21998 0.96553 0.96510 0.99761 1.73678 1.22909 0.93177 1.17858 1.43113 1.23566 1.09074 1.33362 0.70542 1.20107 0.93288 0.95996 0.97353 1.20518 1.03313 0.87846 0.99361 1.23058 0.97126 0.97411 1.03561 1.23136 0.97750 1.02871 0.96264 1.20403 0.98035 0.93300 1.01365 1.98370 1.46290 1.97327 1.55432 1.21854 0.96117 0.85641 0.96156 0.93692 0.91595 0.93668 0.77668 0.76264 0.84650 0.88977 0.87255 0.87320 0.88327 0.92874 0.95826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.97 10.48 55.49 0.58 -26.39 16 2 C -0.01 -0.24 5.45 -17.43 -0.09 -0.34 16 3 Si 0.91 22.40 29.56 -169.99 -5.02 17.38 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.23 -6.43 10.26 -15.06 -0.15 -6.59 16 8 H 0.08 2.21 7.84 -52.48 -0.41 1.80 16 9 N -0.60 -15.62 3.39 -170.06 -0.58 -16.20 16 10 C 0.15 3.59 5.21 -3.06 -0.02 3.58 16 11 C 0.07 1.33 3.94 -24.89 -0.10 1.23 16 12 H 0.06 1.00 8.00 -51.93 -0.42 0.58 16 13 O -0.56 -9.90 13.40 -35.23 -0.47 -10.38 16 14 C 0.14 2.74 3.04 -65.79 -0.20 2.54 16 15 H 0.10 2.30 7.73 -51.93 -0.40 1.90 16 16 N -0.70 -11.57 5.23 -52.73 -0.28 -11.85 16 17 C 0.60 10.32 7.82 -12.41 -0.10 10.22 16 18 O -0.51 -10.37 15.62 5.30 0.08 -10.29 16 19 C 0.01 0.21 7.13 -82.76 -0.59 -0.38 16 20 N -0.24 -2.84 11.91 33.42 0.40 -2.44 16 21 N -0.38 -3.12 6.76 33.62 0.23 -2.89 16 22 H 0.45 1.98 7.94 -190.45 -1.51 0.47 16 23 C 0.06 0.54 6.75 -81.90 -0.55 -0.01 16 24 C -0.09 -0.55 6.12 -91.77 -0.56 -1.11 16 25 C -0.17 -0.62 10.15 -26.69 -0.27 -0.89 16 26 C -0.16 -0.71 10.24 -26.69 -0.27 -0.98 16 27 C -0.09 -1.20 6.79 -39.31 -0.27 -1.47 16 28 Cl 0.00 -0.04 28.02 -51.86 -1.45 -1.49 16 29 C 0.13 2.88 6.92 -2.54 -0.02 2.86 16 30 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.07 1.72 6.99 -51.93 -0.36 1.35 16 32 H 0.05 1.21 7.83 -51.93 -0.41 0.80 16 33 H 0.38 5.00 9.12 45.56 0.42 5.42 16 34 H 0.40 5.75 8.24 -40.82 -0.34 5.42 16 35 H 0.14 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.22 7.16 -51.93 -0.37 -0.15 16 37 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 363.53 15.07 5.48 5.48 Total: -1.00 -34.89 363.53 -9.70 -44.59 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.47 Total: 5.82 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: -3.19 Total: 8.66 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: 0.35 Total: -59.77 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.39 Total: -20.66 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.45 Total: -1.49 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.89 -9.70 -44.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077302817.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.163 kcal (2) G-P(sol) polarization free energy of solvation -34.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds