Wall clock time and date at job start Sat Apr 11 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35658 * 116.99778 * 2 1 4 4 C 1.38638 * 120.14521 * 0.02562 * 3 2 1 5 5 C 1.38205 * 120.07393 * 180.02562 * 4 3 2 6 6 Cl 1.73599 * 119.81947 * 179.97438 * 5 4 3 7 7 C 1.38698 * 120.36262 * 0.02562 * 5 4 3 8 8 C 1.37733 * 120.28461 * 359.67782 * 7 5 4 9 9 C 1.39742 * 119.92033 * 0.61783 * 8 7 5 10 10 C 1.47478 * 120.18138 * 179.68020 * 9 8 7 11 11 O 1.21597 * 120.00253 * 179.73161 * 10 9 8 12 12 N 1.34782 * 119.99750 * 359.72290 * 10 9 8 13 13 C 1.46496 * 120.00001 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.64085 * 31.86174 * 13 12 10 15 15 C 1.54326 * 110.72058 * 268.52400 * 13 12 10 16 16 N 1.47283 * 107.30758 * 219.45595 * 15 13 12 17 17 C 1.36940 * 125.79385 * 178.92945 * 16 15 13 18 18 H 1.07998 * 120.00050 * 341.51182 * 17 16 15 19 19 C 1.38813 * 119.99845 * 161.52064 * 17 16 15 20 20 N 1.31625 * 119.99502 * 157.60351 * 19 17 16 21 21 Si 1.86792 * 120.00162 * 337.60447 * 19 17 16 22 22 H 1.48498 * 109.47196 * 84.54220 * 21 19 17 23 23 H 1.48510 * 109.47106 * 204.53762 * 21 19 17 24 24 H 1.48492 * 109.47267 * 324.53766 * 21 19 17 25 25 C 1.47426 * 108.55833 * 358.92209 * 16 15 13 26 26 C 1.54908 * 104.92948 * 24.15781 * 25 16 15 27 27 H 1.08995 * 111.00473 * 81.00582 * 26 25 16 28 28 O 1.42890 * 111.00650 * 204.82346 * 26 25 16 29 29 H 1.09003 * 109.46792 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47202 * 299.99764 * 1 2 3 31 31 H 1.08994 * 109.46976 * 60.00305 * 1 2 3 32 32 H 1.08004 * 119.95866 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.85843 * 179.97438 * 7 5 4 34 34 H 1.07992 * 120.04121 * 180.30156 * 8 7 5 35 35 H 0.97005 * 119.99936 * 0.02562 * 12 10 9 36 36 H 1.09004 * 109.87914 * 338.86268 * 15 13 12 37 37 H 1.09000 * 109.88029 * 99.86970 * 15 13 12 38 38 H 0.97002 * 119.99552 * 179.97438 * 20 19 17 39 39 H 1.09001 * 110.36505 * 265.26095 * 25 16 15 40 40 H 1.09001 * 110.36209 * 143.05158 * 25 16 15 41 41 H 0.96699 * 114.00164 * 298.54516 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2927 2.3733 0.0005 5 6 1.9216 3.6040 0.0000 6 17 0.9733 5.0581 0.0000 7 6 3.3063 3.6837 -0.0016 8 6 4.0681 2.5362 0.0040 9 6 3.4446 1.2856 -0.0017 10 6 4.2547 0.0532 -0.0029 11 8 3.7087 -1.0333 -0.0029 12 7 5.6002 0.1313 -0.0041 13 6 6.4050 -1.0928 -0.0058 14 1 5.8917 -1.8893 -0.5444 15 6 6.7374 -1.5298 1.4365 16 7 8.1273 -2.0167 1.4375 17 6 8.8138 -2.4773 2.5292 18 1 8.4694 -2.2375 3.5243 19 6 9.9525 -3.2523 2.3568 20 7 10.8474 -3.3301 3.3188 21 14 10.2147 -4.1847 0.7596 22 1 10.8373 -3.2835 -0.2432 23 1 11.1085 -5.3450 1.0047 24 1 8.9069 -4.6667 0.2474 25 6 8.6574 -1.9257 0.0648 26 6 7.8050 -0.8285 -0.6202 27 1 8.1651 0.1664 -0.3582 28 8 7.7849 -1.0060 -2.0378 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2140 2.3187 0.0005 33 1 3.7893 4.6497 -0.0024 34 1 5.1459 2.6028 0.0076 35 1 6.0358 0.9981 -0.0038 36 1 6.6423 -0.6799 2.1125 37 1 6.0625 -2.3275 1.7470 38 1 11.6430 -3.8720 3.1985 39 1 8.5369 -2.8777 -0.4522 40 1 9.7076 -1.6346 0.0824 41 1 8.6557 -0.9467 -2.4541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077587341.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:45 Heat of formation + Delta-G solvation = -59.016576 kcal Electronic energy + Delta-G solvation = -27107.752049 eV Core-core repulsion = 23015.440521 eV Total energy + Delta-G solvation = -4092.311528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.89827 -39.44079 -38.10579 -37.87994 -36.66239 -35.36522 -34.17607 -32.14851 -31.40131 -30.65079 -28.84892 -27.79461 -27.43036 -24.73732 -23.69797 -22.63906 -21.30126 -20.88130 -20.10232 -18.85511 -17.63986 -17.30312 -16.90963 -16.75668 -16.14177 -15.94923 -15.60735 -15.25621 -14.85848 -14.69016 -14.30728 -14.05369 -13.82219 -13.65444 -13.58693 -13.10738 -12.87391 -12.84407 -12.37423 -12.28387 -12.14175 -11.95821 -11.73580 -11.42304 -11.40613 -11.30907 -11.18377 -10.89133 -10.44568 -10.09489 -9.91502 -9.63866 -9.46474 -9.38063 -8.96445 -8.71191 -8.60391 -7.13492 -5.99677 -3.31598 0.33507 0.89124 1.58697 2.65524 2.89705 3.12475 3.28243 3.46072 3.49878 3.53791 4.19090 4.24283 4.46515 4.49722 4.57010 4.62399 4.81534 4.85112 4.88763 5.02521 5.07282 5.14889 5.24937 5.29264 5.32191 5.41256 5.53142 5.67597 5.73879 5.83324 5.85233 6.07163 6.31602 6.35489 6.46283 6.60295 6.76583 6.96318 7.56511 7.60510 7.78927 8.25144 8.33393 8.76158 9.61969 10.07286 11.16005 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020017 B = 0.002550 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.467410 B =10976.257500 C =11287.633888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.272 6.272 3 C 0.198 3.802 4 C -0.215 4.215 5 C 0.028 3.972 6 Cl -0.062 7.062 7 C -0.158 4.158 8 C -0.033 4.033 9 C -0.162 4.162 10 C 0.560 3.440 11 O -0.513 6.513 12 N -0.713 5.713 13 C 0.144 3.856 14 H 0.107 0.893 15 C 0.128 3.872 16 N -0.603 5.603 17 C -0.243 4.243 18 H 0.095 0.905 19 C 0.023 3.977 20 N -0.906 5.906 21 Si 0.882 3.118 22 H -0.286 1.286 23 H -0.301 1.301 24 H -0.274 1.274 25 C 0.084 3.916 26 C 0.082 3.918 27 H 0.073 0.927 28 O -0.561 6.561 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.396 0.604 36 H 0.042 0.958 37 H 0.044 0.956 38 H 0.264 0.736 39 H 0.039 0.961 40 H 0.066 0.934 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.654 16.855 -9.949 27.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.182 6.182 3 C 0.149 3.851 4 C -0.234 4.234 5 C 0.001 3.999 6 Cl -0.033 7.033 7 C -0.177 4.177 8 C -0.052 4.052 9 C -0.166 4.166 10 C 0.346 3.654 11 O -0.388 6.388 12 N -0.365 5.365 13 C 0.039 3.961 14 H 0.125 0.875 15 C 0.001 3.999 16 N -0.332 5.332 17 C -0.369 4.369 18 H 0.113 0.887 19 C -0.176 4.176 20 N -0.549 5.549 21 Si 0.712 3.288 22 H -0.213 1.213 23 H -0.228 1.228 24 H -0.200 1.200 25 C -0.042 4.042 26 C 0.021 3.979 27 H 0.091 0.909 28 O -0.366 6.366 29 H 0.124 0.876 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.232 0.768 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -19.521 15.788 -9.686 26.910 hybrid contribution 0.739 0.192 -0.886 1.170 sum -18.781 15.980 -10.573 26.831 Atomic orbital electron populations 1.23237 0.78408 1.04765 1.01293 1.86450 1.21011 1.24556 1.86179 1.18852 0.90801 0.84628 0.90794 1.21060 1.01026 0.90295 1.11061 1.20834 0.91975 0.87303 0.99837 1.98392 1.72370 1.36026 1.96522 1.20877 0.91274 0.99771 1.05740 1.21161 1.00290 0.90042 0.93738 1.19536 0.90893 0.94457 1.11709 1.17823 0.81994 0.88436 0.77106 1.90849 1.71405 1.28444 1.48152 1.45802 1.05661 1.09512 1.75534 1.21994 0.89730 0.87268 0.97132 0.87504 1.21781 0.87260 0.98086 0.92747 1.44652 1.08393 1.75894 1.04256 1.18650 1.06075 1.26736 0.85477 0.88709 1.25013 0.96529 0.99064 0.97009 1.69839 1.09536 1.41750 1.33807 0.87005 0.77417 0.80282 0.84090 1.21331 1.22848 1.20016 1.22624 0.97875 0.96282 0.87422 1.23297 0.95647 0.98519 0.80395 0.90931 1.86474 1.34718 1.95793 1.19607 0.87572 0.92366 0.92432 0.83725 0.84024 0.83799 0.76837 0.94038 0.93778 0.92600 0.94402 0.91634 0.77443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.27 -3.49 8.57 -40.56 -0.35 -3.84 16 3 C 0.20 2.34 6.70 -38.70 -0.26 2.09 16 4 C -0.21 -1.97 8.80 -39.45 -0.35 -2.32 16 5 C 0.03 0.24 6.32 -39.42 -0.25 -0.01 16 6 Cl -0.06 -0.48 28.94 -51.86 -1.50 -1.98 16 7 C -0.16 -1.27 9.80 -39.60 -0.39 -1.66 16 8 C -0.03 -0.30 9.53 -39.20 -0.37 -0.67 16 9 C -0.16 -1.98 5.89 -104.84 -0.62 -2.60 16 10 C 0.56 8.66 7.76 -12.49 -0.10 8.57 16 11 O -0.51 -9.94 14.80 -16.61 -0.25 -10.19 16 12 N -0.71 -10.09 5.05 -53.09 -0.27 -10.36 16 13 C 0.14 2.51 3.06 -66.10 -0.20 2.31 16 14 H 0.11 2.09 7.55 -51.93 -0.39 1.70 16 15 C 0.13 2.61 7.01 -2.92 -0.02 2.59 16 16 N -0.60 -14.47 3.22 -169.86 -0.55 -15.01 16 17 C -0.24 -6.82 10.58 -15.06 -0.16 -6.98 16 18 H 0.10 2.82 8.06 -52.49 -0.42 2.40 16 19 C 0.02 0.65 5.43 -17.43 -0.09 0.56 16 20 N -0.91 -27.61 13.97 55.49 0.78 -26.83 16 21 Si 0.88 22.35 24.27 -169.99 -4.13 18.23 16 22 H -0.29 -6.80 6.48 56.52 0.37 -6.43 16 23 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 24 H -0.27 -7.01 6.65 56.52 0.38 -6.64 16 25 C 0.08 1.77 4.42 -2.53 -0.01 1.76 16 26 C 0.08 1.34 4.06 -24.58 -0.10 1.24 16 27 H 0.07 1.04 8.01 -51.93 -0.42 0.63 16 28 O -0.56 -8.39 13.47 -35.23 -0.47 -8.87 16 29 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 31 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 32 H 0.15 1.02 6.30 -52.48 -0.33 0.69 16 33 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.14 0.93 6.40 -52.49 -0.34 0.59 16 35 H 0.40 4.29 6.59 -40.82 -0.27 4.02 16 36 H 0.04 0.82 8.03 -51.93 -0.42 0.40 16 37 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 39 H 0.04 0.86 5.57 -51.93 -0.29 0.57 16 40 H 0.07 1.41 6.63 -51.93 -0.34 1.07 16 41 H 0.38 4.04 9.11 45.56 0.42 4.46 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -35.60 351.93 -7.42 -43.01 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -4.06 Total: 4.53 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -1.93 Total: 6.00 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.04 Total: -52.21 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -1.07 Total: -22.89 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.13 Total: 18.23 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.50 Total: -1.98 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.60 -7.42 -43.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077587341.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.003 kcal (2) G-P(sol) polarization free energy of solvation -35.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds