Wall clock time and date at job start Sat Apr 11 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35658 * 116.99778 * 2 1 4 4 C 1.38638 * 120.14521 * 0.02562 * 3 2 1 5 5 C 1.38205 * 120.07393 * 180.02562 * 4 3 2 6 6 Cl 1.73599 * 119.81947 * 179.97438 * 5 4 3 7 7 C 1.38698 * 120.36262 * 0.02562 * 5 4 3 8 8 C 1.37733 * 120.28461 * 359.67782 * 7 5 4 9 9 C 1.39742 * 119.92033 * 0.61783 * 8 7 5 10 10 C 1.47478 * 120.18138 * 179.68020 * 9 8 7 11 11 O 1.21597 * 120.00253 * 179.73161 * 10 9 8 12 12 N 1.34782 * 119.99750 * 359.72290 * 10 9 8 13 13 C 1.46496 * 120.00001 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.64085 * 31.86174 * 13 12 10 15 15 C 1.54326 * 110.72058 * 268.52400 * 13 12 10 16 16 N 1.47283 * 107.30758 * 219.45595 * 15 13 12 17 17 C 1.36940 * 125.79385 * 178.92945 * 16 15 13 18 18 H 1.07998 * 120.00050 * 341.51182 * 17 16 15 19 19 C 1.38813 * 119.99845 * 161.52064 * 17 16 15 20 20 N 1.31625 * 119.99502 * 157.60351 * 19 17 16 21 21 Si 1.86792 * 120.00162 * 337.60447 * 19 17 16 22 22 H 1.48498 * 109.47196 * 84.54220 * 21 19 17 23 23 H 1.48510 * 109.47106 * 204.53762 * 21 19 17 24 24 H 1.48492 * 109.47267 * 324.53766 * 21 19 17 25 25 C 1.47426 * 108.55833 * 358.92209 * 16 15 13 26 26 C 1.54908 * 104.92948 * 24.15781 * 25 16 15 27 27 H 1.08995 * 111.00473 * 81.00582 * 26 25 16 28 28 O 1.42890 * 111.00650 * 204.82346 * 26 25 16 29 29 H 1.09003 * 109.46792 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47202 * 299.99764 * 1 2 3 31 31 H 1.08994 * 109.46976 * 60.00305 * 1 2 3 32 32 H 1.08004 * 119.95866 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.85843 * 179.97438 * 7 5 4 34 34 H 1.07992 * 120.04121 * 180.30156 * 8 7 5 35 35 H 0.97005 * 119.99936 * 0.02562 * 12 10 9 36 36 H 1.09004 * 109.87914 * 338.86268 * 15 13 12 37 37 H 1.09000 * 109.88029 * 99.86970 * 15 13 12 38 38 H 0.97002 * 119.99552 * 179.97438 * 20 19 17 39 39 H 1.09001 * 110.36505 * 265.26095 * 25 16 15 40 40 H 1.09001 * 110.36209 * 143.05158 * 25 16 15 41 41 H 0.96699 * 114.00164 * 298.54516 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2927 2.3733 0.0005 5 6 1.9216 3.6040 0.0000 6 17 0.9733 5.0581 0.0000 7 6 3.3063 3.6837 -0.0016 8 6 4.0681 2.5362 0.0040 9 6 3.4446 1.2856 -0.0017 10 6 4.2547 0.0532 -0.0029 11 8 3.7087 -1.0333 -0.0029 12 7 5.6002 0.1313 -0.0041 13 6 6.4050 -1.0928 -0.0058 14 1 5.8917 -1.8893 -0.5444 15 6 6.7374 -1.5298 1.4365 16 7 8.1273 -2.0167 1.4375 17 6 8.8138 -2.4773 2.5292 18 1 8.4694 -2.2375 3.5243 19 6 9.9525 -3.2523 2.3568 20 7 10.8474 -3.3301 3.3188 21 14 10.2147 -4.1847 0.7596 22 1 10.8373 -3.2835 -0.2432 23 1 11.1085 -5.3450 1.0047 24 1 8.9069 -4.6667 0.2474 25 6 8.6574 -1.9257 0.0648 26 6 7.8050 -0.8285 -0.6202 27 1 8.1651 0.1664 -0.3582 28 8 7.7849 -1.0060 -2.0378 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2140 2.3187 0.0005 33 1 3.7893 4.6497 -0.0024 34 1 5.1459 2.6028 0.0076 35 1 6.0358 0.9981 -0.0038 36 1 6.6423 -0.6799 2.1125 37 1 6.0625 -2.3275 1.7470 38 1 11.6430 -3.8720 3.1985 39 1 8.5369 -2.8777 -0.4522 40 1 9.7076 -1.6346 0.0824 41 1 8.6557 -0.9467 -2.4541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077587341.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:44 Heat of formation + Delta-G solvation = -86.907795 kcal Electronic energy + Delta-G solvation = -27108.961503 eV Core-core repulsion = 23015.440521 eV Total energy + Delta-G solvation = -4093.520982 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.79215 -40.65053 -39.35186 -38.70266 -37.35139 -36.81029 -35.61245 -34.01264 -32.43968 -31.35608 -30.43383 -29.26730 -28.22103 -26.33835 -24.83014 -23.37834 -22.94710 -22.08479 -21.52465 -19.74830 -19.06494 -18.65862 -18.20919 -17.83795 -17.34096 -16.90387 -16.52527 -16.36016 -16.17741 -15.88964 -15.63366 -15.39022 -15.01249 -14.82402 -14.72698 -14.45471 -14.30998 -13.97733 -13.67281 -13.56746 -13.25937 -12.99586 -12.96782 -12.77255 -12.72898 -12.40164 -12.33567 -12.03885 -11.85982 -11.67004 -11.65760 -11.23945 -10.93398 -10.79316 -10.24991 -10.03489 -9.38997 -9.15400 -8.21547 -5.50787 -0.44691 0.20170 0.93134 1.25765 1.39752 1.47712 1.70602 1.95348 2.23220 2.37150 2.62936 2.80738 3.07831 3.36423 3.52085 3.59392 3.70330 3.86799 3.87390 3.97162 3.99071 4.23097 4.25992 4.32020 4.33670 4.40247 4.47673 4.68501 4.69187 4.78624 4.83353 4.90686 4.94078 5.03063 5.06047 5.37727 5.43602 5.58745 6.05519 6.23970 6.51073 6.65926 6.80515 7.20667 7.45810 7.99088 8.97725 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020017 B = 0.002550 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.467410 B =10976.257500 C =11287.633888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.309 6.309 3 C 0.182 3.818 4 C -0.212 4.212 5 C 0.028 3.972 6 Cl -0.050 7.050 7 C -0.152 4.152 8 C -0.023 4.023 9 C -0.189 4.189 10 C 0.558 3.442 11 O -0.562 6.562 12 N -0.699 5.699 13 C 0.155 3.845 14 H 0.083 0.917 15 C 0.128 3.872 16 N -0.619 5.619 17 C -0.239 4.239 18 H 0.063 0.937 19 C -0.030 4.030 20 N -0.950 5.950 21 Si 0.943 3.057 22 H -0.255 1.255 23 H -0.307 1.307 24 H -0.281 1.281 25 C 0.076 3.924 26 C 0.107 3.893 27 H 0.107 0.893 28 O -0.563 6.563 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.163 0.837 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.416 0.584 36 H 0.050 0.950 37 H 0.020 0.980 38 H 0.265 0.735 39 H 0.026 0.974 40 H 0.064 0.936 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.149 19.743 -12.125 30.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.221 6.221 3 C 0.133 3.867 4 C -0.232 4.232 5 C 0.000 4.000 6 Cl -0.021 7.021 7 C -0.171 4.171 8 C -0.042 4.042 9 C -0.193 4.193 10 C 0.347 3.653 11 O -0.441 6.441 12 N -0.352 5.352 13 C 0.049 3.951 14 H 0.101 0.899 15 C 0.002 3.998 16 N -0.347 5.347 17 C -0.367 4.367 18 H 0.080 0.920 19 C -0.226 4.226 20 N -0.597 5.597 21 Si 0.772 3.228 22 H -0.180 1.180 23 H -0.235 1.235 24 H -0.208 1.208 25 C -0.050 4.050 26 C 0.047 3.953 27 H 0.125 0.875 28 O -0.371 6.371 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.180 0.820 33 H 0.187 0.813 34 H 0.188 0.812 35 H 0.255 0.745 36 H 0.068 0.932 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -20.015 18.746 -11.911 29.898 hybrid contribution 0.749 -0.614 -0.160 0.982 sum -19.266 18.132 -12.071 29.080 Atomic orbital electron populations 1.23488 0.76376 1.05710 1.02856 1.86398 1.23404 1.25771 1.86483 1.19095 0.91024 0.85118 0.91468 1.21189 1.01844 0.89659 1.10474 1.21035 0.92599 0.87529 0.98807 1.98403 1.72174 1.35156 1.96362 1.21202 0.91004 1.00585 1.04304 1.21421 1.01649 0.88850 0.92278 1.19459 0.90990 0.94084 1.14783 1.18374 0.82197 0.89021 0.75749 1.90820 1.72286 1.30563 1.50457 1.45560 1.05260 1.09275 1.75094 1.21554 0.90775 0.88170 0.94629 0.89859 1.21824 0.85146 0.97449 0.95367 1.44689 1.09827 1.75625 1.04583 1.18567 1.05993 1.26327 0.85844 0.91954 1.25607 0.96497 1.00058 1.00410 1.69950 1.10384 1.43104 1.36212 0.86007 0.76870 0.78971 0.80981 1.18050 1.23490 1.20752 1.22764 0.98713 0.97570 0.85943 1.23000 0.93187 0.98202 0.80939 0.87536 1.86453 1.36730 1.95738 1.18224 0.87108 0.90872 0.90680 0.81954 0.81271 0.81183 0.74546 0.93190 0.96177 0.92609 0.95594 0.91757 0.74856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.26 16 2 O -0.31 -8.06 8.57 -68.80 -0.59 -8.65 16 3 C 0.18 4.17 6.70 22.84 0.15 4.32 16 4 C -0.21 -3.49 8.80 22.36 0.20 -3.29 16 5 C 0.03 0.40 6.32 22.37 0.14 0.54 16 6 Cl -0.05 -0.62 28.94 -2.72 -0.08 -0.70 16 7 C -0.15 -1.91 9.80 22.26 0.22 -1.69 16 8 C -0.02 -0.35 9.53 22.51 0.21 -0.13 16 9 C -0.19 -4.42 5.89 -20.01 -0.12 -4.54 16 10 C 0.56 17.11 7.76 86.68 0.67 17.78 16 11 O -0.56 -22.53 14.80 16.91 0.25 -22.28 16 12 N -0.70 -18.66 5.05 -440.12 -2.22 -20.89 16 13 C 0.16 5.27 3.06 46.18 0.14 5.41 16 14 H 0.08 3.29 7.55 -2.39 -0.02 3.27 16 15 C 0.13 5.30 7.01 86.68 0.61 5.91 16 16 N -0.62 -29.75 3.22 -691.31 -2.22 -31.97 16 17 C -0.24 -13.79 10.58 84.03 0.89 -12.90 16 18 H 0.06 3.90 8.06 -2.91 -0.02 3.88 16 19 C -0.03 -1.79 5.43 84.86 0.46 -1.33 16 20 N -0.95 -59.28 13.97 21.65 0.30 -58.98 16 21 Si 0.94 46.46 24.27 68.60 1.66 48.13 16 22 H -0.26 -11.20 6.48 99.48 0.65 -10.56 16 23 H -0.31 -15.29 7.11 99.48 0.71 -14.59 16 24 H -0.28 -14.04 6.65 99.48 0.66 -13.37 16 25 C 0.08 3.05 4.42 86.85 0.38 3.44 16 26 C 0.11 3.22 4.06 31.99 0.13 3.35 16 27 H 0.11 2.56 8.01 -2.39 -0.02 2.54 16 28 O -0.56 -14.84 13.47 -148.98 -2.01 -16.85 16 29 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 31 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 32 H 0.16 1.93 6.30 -2.91 -0.02 1.92 16 33 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 34 H 0.17 1.49 6.40 -2.91 -0.02 1.47 16 35 H 0.42 7.66 6.59 -92.70 -0.61 7.05 16 36 H 0.05 1.97 8.03 -2.39 -0.02 1.95 16 37 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.03 1.14 5.57 -2.39 -0.01 1.12 16 40 H 0.06 2.61 6.63 -2.39 -0.02 2.60 16 41 H 0.40 6.82 9.11 -74.06 -0.67 6.15 16 Total: -1.00 -80.72 351.93 0.01 -80.71 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -0.29 Total: 13.36 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 5.20 Total: 18.13 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -4.14 Total: -111.84 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -2.35 Total: -47.79 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.66 Total: 48.13 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -80.72 0.01 -80.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077587341.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.196 kcal (2) G-P(sol) polarization free energy of solvation -80.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds