Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35937 * 117.00343 * 2 1 4 4 C 1.38407 * 119.98622 * 0.29508 * 3 2 1 5 5 C 1.39554 * 119.80428 * 180.27862 * 4 3 2 6 6 C 1.47798 * 120.10507 * 179.70056 * 5 4 3 7 7 O 1.21555 * 119.99943 * 359.72576 * 6 5 4 8 8 N 1.34773 * 119.99808 * 179.72444 * 6 5 4 9 9 C 1.46496 * 120.00012 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.64189 * 31.85883 * 9 8 6 11 11 C 1.54327 * 110.87036 * 268.61124 * 9 8 6 12 12 N 1.47028 * 107.26850 * 219.37303 * 11 9 8 13 13 C 1.36941 * 125.64844 * 178.97541 * 12 11 9 14 14 H 1.07996 * 119.99797 * 174.76597 * 13 12 11 15 15 C 1.38814 * 119.99801 * 354.77114 * 13 12 11 16 16 N 1.31622 * 120.00025 * 7.05127 * 15 13 12 17 17 Si 1.86797 * 119.99980 * 187.05721 * 15 13 12 18 18 H 1.48496 * 109.47551 * 94.98082 * 17 15 13 19 19 H 1.48498 * 109.47148 * 214.98647 * 17 15 13 20 20 H 1.48502 * 109.47053 * 334.97956 * 17 15 13 21 21 C 1.47427 * 108.70299 * 358.94021 * 12 11 9 22 22 C 1.54909 * 104.83321 * 24.12871 * 21 12 11 23 23 H 1.09001 * 111.00329 * 81.06387 * 22 21 12 24 24 O 1.42903 * 111.00330 * 204.88039 * 22 21 12 25 25 C 1.39619 * 119.78243 * 359.42392 * 5 4 3 26 26 C 1.37922 * 119.98025 * 0.27655 * 25 5 4 27 27 C 1.38412 * 120.18984 * 0.02562 * 26 25 5 28 28 Cl 1.73604 * 119.89189 * 179.97438 * 27 26 25 29 29 H 1.09003 * 109.46789 * 59.99993 * 1 2 3 30 30 H 1.08998 * 109.47621 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47365 * 300.00838 * 1 2 3 32 32 H 1.08002 * 120.09824 * 359.97438 * 4 3 2 33 33 H 0.97002 * 119.99747 * 359.97438 * 8 6 5 34 34 H 1.08995 * 109.88254 * 338.78679 * 11 9 8 35 35 H 1.08993 * 109.88420 * 99.79891 * 11 9 8 36 36 H 0.96995 * 120.00030 * 180.02562 * 16 15 13 37 37 H 1.09002 * 110.36341 * 265.28808 * 21 12 11 38 38 H 1.08995 * 110.36647 * 142.97304 * 21 12 11 39 39 H 0.96702 * 113.99783 * 298.54985 * 24 22 21 40 40 H 1.08009 * 120.00899 * 180.25564 * 25 5 4 41 41 H 1.07999 * 119.90751 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2922 2.3718 0.0062 5 6 1.9297 3.6132 0.0003 6 6 1.1310 4.8568 0.0001 7 8 -0.0832 4.7993 0.0001 8 7 1.7490 6.0545 0.0000 9 6 0.9573 7.2871 0.0004 10 1 0.0209 7.1423 0.5392 11 6 0.6891 7.7688 -1.4410 12 7 0.8067 9.2344 -1.4405 13 6 0.6598 10.0472 -2.5327 14 1 0.6817 11.1204 -2.4139 15 6 0.4826 9.4917 -3.7924 16 7 0.3168 8.1924 -3.9213 17 14 0.4797 10.5882 -5.3047 18 1 1.8408 10.6174 -5.8978 19 1 -0.4832 10.0545 -6.3012 20 1 0.0790 11.9647 -4.9173 21 6 1.1082 9.6839 -0.0691 22 6 1.7676 8.4597 0.6136 23 1 2.8225 8.3860 0.3491 24 8 1.6004 8.5124 2.0318 25 6 3.3245 3.6765 0.0003 26 6 4.0671 2.5143 0.0005 27 6 3.4338 1.2836 0.0000 28 17 4.3762 -0.1744 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 0.2136 2.3169 0.0106 33 1 2.7179 6.1003 0.0004 34 1 1.4260 7.3381 -2.1189 35 1 -0.3142 7.4752 -1.7493 36 1 0.1933 7.8042 -4.8016 37 1 0.1902 9.9592 0.4502 38 1 1.8004 10.5256 -0.0894 39 1 2.0083 9.2844 2.4475 40 1 3.8217 4.6353 -0.0001 41 1 5.1459 2.5646 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077783738.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -64.267488 kcal Electronic energy + Delta-G solvation = -26993.685912 eV Core-core repulsion = 22901.146687 eV Total energy + Delta-G solvation = -4092.539225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.67615 -39.50061 -38.07516 -37.38725 -36.48494 -35.25571 -34.04592 -31.90174 -31.23195 -30.50938 -28.52955 -27.53105 -26.97210 -24.73775 -23.71119 -22.52961 -20.92408 -20.71063 -20.01987 -18.74581 -17.20595 -17.07412 -16.70641 -16.49243 -16.47869 -16.08102 -15.45982 -14.96214 -14.53163 -14.46556 -14.16020 -14.05410 -13.89094 -13.40886 -13.30105 -12.99669 -12.76061 -12.54330 -12.15727 -12.05997 -11.74371 -11.67608 -11.49573 -11.32948 -11.08837 -11.05108 -10.90804 -10.82817 -10.26907 -10.14469 -9.89621 -9.79692 -9.57569 -9.17605 -8.73861 -8.64164 -8.47793 -6.95799 -5.79602 -3.15203 0.49338 1.02203 1.89899 2.78241 2.89315 3.26904 3.36154 3.41186 3.43903 3.67687 4.32260 4.43694 4.48781 4.60090 4.75289 4.78851 4.95942 4.97706 5.10121 5.15082 5.30460 5.35398 5.40023 5.49105 5.56741 5.61533 5.69683 5.82825 5.99869 6.12754 6.19113 6.23121 6.38852 6.56605 6.68209 6.92984 7.40495 7.48312 7.71484 7.74472 7.86273 8.14039 8.40500 9.10450 9.71096 10.34170 11.31455 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013756 B = 0.002733 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.916828 B =10241.618733 C =10913.752587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.305 6.305 3 C 0.130 3.870 4 C -0.140 4.140 5 C -0.078 4.078 6 C 0.557 3.443 7 O -0.530 6.530 8 N -0.702 5.702 9 C 0.127 3.873 10 H 0.099 0.901 11 C 0.173 3.827 12 N -0.601 5.601 13 C -0.236 4.236 14 H 0.081 0.919 15 C -0.004 4.004 16 N -0.916 5.916 17 Si 0.913 3.087 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.109 3.891 22 C 0.078 3.922 23 H 0.067 0.933 24 O -0.563 6.563 25 C -0.112 4.112 26 C -0.079 4.079 27 C -0.052 4.052 28 Cl -0.056 7.056 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.152 0.848 33 H 0.396 0.604 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.254 0.746 37 H 0.031 0.969 38 H 0.047 0.953 39 H 0.374 0.626 40 H 0.139 0.861 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.933 -13.345 10.874 18.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.218 6.218 3 C 0.083 3.917 4 C -0.160 4.160 5 C -0.081 4.081 6 C 0.343 3.657 7 O -0.407 6.407 8 N -0.352 5.352 9 C 0.022 3.978 10 H 0.117 0.883 11 C 0.048 3.952 12 N -0.330 5.330 13 C -0.364 4.364 14 H 0.099 0.901 15 C -0.201 4.201 16 N -0.562 5.562 17 Si 0.743 3.257 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.206 1.206 21 C -0.019 4.019 22 C 0.018 3.982 23 H 0.085 0.915 24 O -0.367 6.367 25 C -0.131 4.131 26 C -0.097 4.097 27 C -0.079 4.079 28 Cl -0.027 7.027 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.079 0.921 32 H 0.170 0.830 33 H 0.232 0.768 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.221 0.779 40 H 0.157 0.843 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.832 -14.282 10.531 19.014 hybrid contribution 0.628 1.116 -0.848 1.535 sum 7.460 -13.166 9.684 17.966 Atomic orbital electron populations 1.23189 0.77529 1.04359 1.02186 1.86148 1.21965 1.25342 1.88331 1.18524 0.90390 0.85240 0.97499 1.21329 1.01369 0.90059 1.03264 1.19946 0.93589 0.93580 1.01035 1.18028 0.87498 0.83237 0.76937 1.90786 1.13475 1.87098 1.49369 1.45746 1.10005 1.05441 1.74009 1.22480 0.94522 0.81138 0.99696 0.88274 1.21541 1.01786 0.83701 0.88216 1.44282 1.83734 1.02216 1.02728 1.19048 1.43983 0.89161 0.84182 0.90131 1.24865 1.01554 0.96077 0.97605 1.69963 1.54536 1.09401 1.22350 0.86087 0.77412 0.79386 0.82795 1.21529 1.21667 1.20557 1.22181 0.97381 0.94619 0.87689 1.23358 0.98103 0.96823 0.79933 0.91485 1.86516 1.80938 1.49282 1.19991 1.21209 0.92503 0.98683 1.00713 1.20833 1.00805 0.89355 0.98757 1.20363 0.88767 0.88967 1.09846 1.98368 1.71692 1.35707 1.96919 0.91958 0.87796 0.92119 0.83048 0.76833 0.92460 0.92893 0.93530 0.95113 0.93504 0.77900 0.84336 0.83616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.44 9.94 -19.54 -0.19 -3.64 16 3 C 0.13 1.58 6.67 -39.26 -0.26 1.32 16 4 C -0.14 -1.84 8.58 -39.03 -0.33 -2.17 16 5 C -0.08 -1.08 5.87 -104.98 -0.62 -1.69 16 6 C 0.56 9.56 7.77 -12.35 -0.10 9.47 16 7 O -0.53 -11.04 15.99 5.32 0.09 -10.96 16 8 N -0.70 -11.40 5.06 -52.99 -0.27 -11.67 16 9 C 0.13 2.44 3.05 -66.10 -0.20 2.24 16 10 H 0.10 2.11 7.55 -51.93 -0.39 1.72 16 11 C 0.17 4.18 5.14 -3.06 -0.02 4.16 16 12 N -0.60 -14.91 3.40 -170.07 -0.58 -15.49 16 13 C -0.24 -6.40 10.27 -15.06 -0.15 -6.56 16 14 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 15 C 0.00 -0.11 5.48 -17.43 -0.10 -0.21 16 16 N -0.92 -26.66 10.36 55.49 0.57 -26.08 16 17 Si 0.91 21.69 29.56 -169.99 -5.02 16.66 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C 0.11 2.12 6.96 -2.53 -0.02 2.10 16 22 C 0.08 1.30 4.06 -24.58 -0.10 1.20 16 23 H 0.07 1.01 8.01 -51.93 -0.42 0.60 16 24 O -0.56 -8.23 13.47 -35.23 -0.47 -8.70 16 25 C -0.11 -1.22 9.53 -39.18 -0.37 -1.59 16 26 C -0.08 -0.78 9.80 -39.63 -0.39 -1.17 16 27 C -0.05 -0.59 6.34 -39.25 -0.25 -0.84 16 28 Cl -0.06 -0.59 28.49 -51.86 -1.48 -2.07 16 29 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.46 7.65 -51.93 -0.40 0.07 16 32 H 0.15 1.95 5.88 -52.49 -0.31 1.64 16 33 H 0.40 5.15 6.59 -40.82 -0.27 4.88 16 34 H 0.06 1.50 7.19 -51.93 -0.37 1.13 16 35 H 0.05 1.49 7.61 -51.93 -0.40 1.09 16 36 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.37 3.65 9.11 45.56 0.42 4.07 16 40 H 0.14 1.19 6.40 -52.48 -0.34 0.85 16 41 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 359.21 15.07 5.41 5.41 Total: -1.00 -34.06 359.21 -7.96 -42.03 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.11 Total: 7.08 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -1.91 Total: 7.43 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.27 Total: -53.24 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.58 Total: -23.30 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.48 Total: -2.07 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.06 -7.96 -42.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077783738.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.242 kcal (2) G-P(sol) polarization free energy of solvation -34.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds