Wall clock time and date at job start Sat Apr 11 2020 05:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35703 * 117.00316 * 2 1 4 4 C 1.39060 * 119.90493 * 179.97438 * 3 2 1 5 5 C 1.37645 * 120.12720 * 179.97438 * 4 3 2 6 6 C 1.39775 * 119.92534 * 0.02562 * 5 4 3 7 7 C 1.47523 * 120.10255 * 180.02562 * 6 5 4 8 8 O 1.21589 * 120.00353 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99878 * 0.02562 * 7 6 5 10 10 C 1.46493 * 120.00377 * 179.97438 * 9 7 6 11 11 H 1.09005 * 110.64291 * 36.68711 * 10 9 7 12 12 C 1.54318 * 110.72500 * 273.54611 * 10 9 7 13 13 N 1.47012 * 107.27705 * 219.44269 * 12 10 9 14 14 C 1.36939 * 125.65243 * 178.90307 * 13 12 10 15 15 H 1.08000 * 119.99955 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99836 * 179.97438 * 14 13 12 17 17 N 1.31611 * 120.00350 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99752 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46835 * 90.00266 * 18 16 14 20 20 H 1.48495 * 109.47125 * 210.00004 * 18 16 14 21 21 H 1.48499 * 109.47014 * 330.00147 * 18 16 14 22 22 C 1.47424 * 108.70010 * 358.93742 * 13 12 10 23 23 C 1.54906 * 104.83431 * 24.12706 * 22 13 12 24 24 H 1.09006 * 111.00001 * 81.06621 * 23 22 13 25 25 O 1.42901 * 111.00854 * 204.91599 * 23 22 13 26 26 C 1.39859 * 119.79955 * 0.02562 * 6 5 4 27 27 Cl 1.73605 * 120.06183 * 180.02562 * 26 6 5 28 28 C 1.37891 * 119.87753 * 359.97438 * 26 6 5 29 29 H 1.08997 * 109.47737 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47692 * 300.00384 * 1 2 3 31 31 H 1.09003 * 109.47154 * 59.99809 * 1 2 3 32 32 H 1.07999 * 119.93335 * 0.27882 * 4 3 2 33 33 H 1.08001 * 120.03695 * 180.02562 * 5 4 3 34 34 H 0.97003 * 120.00035 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.87583 * 338.86066 * 12 10 9 36 36 H 1.09004 * 109.88635 * 99.86584 * 12 10 9 37 37 H 0.97001 * 120.00271 * 179.97438 * 17 16 14 38 38 H 1.09003 * 110.37123 * 142.96882 * 22 13 12 39 39 H 1.09005 * 110.36716 * 265.17939 * 22 13 12 40 40 H 0.96706 * 113.99767 * 292.20193 * 25 23 22 41 41 H 1.07995 * 119.96311 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4339 1.2795 0.0005 5 6 4.0636 2.5034 0.0000 6 6 3.3055 3.6777 -0.0005 7 6 3.9763 4.9916 -0.0017 8 8 3.3150 6.0119 -0.0017 9 7 5.3223 5.0609 -0.0027 10 6 5.9886 6.3656 -0.0044 11 1 5.4353 7.0804 0.6048 12 6 6.1564 6.8912 -1.4456 13 7 7.4792 7.5276 -1.5270 14 6 8.0213 8.1015 -2.6459 15 1 7.4652 8.1104 -3.5716 16 6 9.2856 8.6719 -2.5901 17 7 9.9635 8.6606 -1.4621 18 14 10.0254 9.4542 -4.1166 19 1 9.6515 10.8905 -4.1675 20 1 11.5044 9.3291 -4.0697 21 1 9.5085 8.7649 -5.3261 22 6 8.1257 7.4448 -0.2047 23 6 7.4532 6.2348 0.4905 24 1 7.8962 5.2965 0.1564 25 8 7.5261 6.3554 1.9126 26 6 1.9089 3.6033 0.0000 27 17 0.9605 5.0574 -0.0013 28 6 1.2865 2.3728 0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 4.0195 0.3720 -0.0036 33 1 5.1424 2.5564 0.0000 34 1 5.8500 4.2469 -0.0023 35 1 6.0997 6.0624 -2.1513 36 1 5.3773 7.6206 -1.6673 37 1 10.8472 9.0588 -1.4232 38 1 9.1961 7.2716 -0.3158 39 1 7.9469 8.3580 0.3630 40 1 8.4223 6.2801 2.2682 41 1 0.2082 2.3137 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077854412.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:51 Heat of formation + Delta-G solvation = -55.169640 kcal Electronic energy + Delta-G solvation = -26893.668617 eV Core-core repulsion = 22801.523905 eV Total energy + Delta-G solvation = -4092.144713 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.76257 -39.64449 -38.11535 -37.20835 -36.38438 -35.07322 -34.07108 -31.91765 -31.27839 -30.70483 -28.38292 -27.84827 -26.91938 -24.64056 -23.42872 -22.94955 -20.90477 -20.54756 -19.91210 -18.82429 -17.81936 -17.12881 -16.81193 -16.60987 -16.26478 -15.57796 -15.40235 -15.00124 -14.76779 -14.49684 -14.20529 -14.05502 -13.86326 -13.38814 -13.24252 -13.01866 -12.79252 -12.52216 -12.30433 -12.14424 -11.88796 -11.54561 -11.49224 -11.27553 -11.14579 -11.09679 -10.97738 -10.83376 -10.18102 -9.92207 -9.72903 -9.55245 -9.27579 -9.22330 -8.82967 -8.71804 -8.55965 -6.91707 -5.72179 -3.14345 0.54546 0.78652 1.97306 2.73661 2.76144 3.26476 3.38276 3.43380 3.45013 3.59705 4.28800 4.39921 4.44010 4.61142 4.62991 4.69235 4.69920 4.81284 5.01972 5.05855 5.17931 5.27220 5.41871 5.61546 5.63857 5.66002 5.73431 5.80710 5.87008 6.07307 6.11266 6.20420 6.49056 6.70327 6.80489 6.93799 7.31822 7.52749 7.67016 7.73967 8.09539 8.25372 8.41215 9.14192 9.74650 10.37102 11.32167 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018552 B = 0.002530 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.908988 B =11066.523909 C =11197.568327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.309 6.309 3 C 0.162 3.838 4 C -0.156 4.156 5 C -0.034 4.034 6 C -0.162 4.162 7 C 0.554 3.446 8 O -0.516 6.516 9 N -0.710 5.710 10 C 0.145 3.855 11 H 0.101 0.899 12 C 0.130 3.870 13 N -0.600 5.600 14 C -0.221 4.221 15 H 0.080 0.920 16 C -0.011 4.011 17 N -0.925 5.925 18 Si 0.917 3.083 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.130 3.870 23 C 0.067 3.933 24 H 0.062 0.938 25 O -0.565 6.565 26 C 0.055 3.945 27 Cl -0.024 7.024 28 C -0.215 4.215 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.395 0.605 35 H 0.030 0.970 36 H 0.035 0.965 37 H 0.253 0.747 38 H 0.113 0.887 39 H 0.026 0.974 40 H 0.377 0.623 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.326 -19.056 5.738 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.222 6.222 3 C 0.115 3.885 4 C -0.175 4.175 5 C -0.053 4.053 6 C -0.166 4.166 7 C 0.341 3.659 8 O -0.392 6.392 9 N -0.362 5.362 10 C 0.040 3.960 11 H 0.119 0.881 12 C 0.003 3.997 13 N -0.328 5.328 14 C -0.349 4.349 15 H 0.098 0.902 16 C -0.207 4.207 17 N -0.574 5.574 18 Si 0.748 3.252 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.004 3.996 23 C 0.007 3.993 24 H 0.079 0.921 25 O -0.370 6.370 26 C 0.026 3.974 27 Cl 0.006 6.994 28 C -0.235 4.235 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.230 0.770 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.130 0.870 39 H 0.044 0.956 40 H 0.224 0.776 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.277 -18.178 5.600 25.035 hybrid contribution 0.864 0.183 -0.735 1.149 sum -15.413 -17.995 4.866 24.188 Atomic orbital electron populations 1.23178 0.77724 1.04452 1.01905 1.86066 1.21981 1.26276 1.87830 1.19079 0.92220 0.83867 0.93345 1.20435 0.91221 0.98942 1.06863 1.21126 1.00104 0.90235 0.93815 1.19788 0.92243 0.94584 1.09969 1.17908 0.82424 0.88302 0.77309 1.90879 1.64106 1.35691 1.48549 1.45884 1.05878 1.09461 1.74962 1.22007 0.92063 0.84207 0.97705 0.88097 1.21625 0.89484 0.95973 0.92599 1.44291 1.13082 1.67596 1.07834 1.19109 0.98412 1.29262 0.88137 0.90205 1.24797 0.97183 1.01128 0.97550 1.69730 1.13213 1.50241 1.24170 0.86024 0.78230 0.79216 0.81751 1.21525 1.21615 1.20631 1.22543 1.00312 0.92193 0.84564 1.23635 0.94939 1.00164 0.80584 0.92062 1.86421 1.33376 1.96437 1.20771 1.20727 0.90937 0.88708 0.96987 1.98435 1.70580 1.34636 1.95765 1.21061 1.00934 0.90342 1.11136 0.87776 0.92168 0.92154 0.83878 0.83874 0.77000 0.95202 0.94741 0.93607 0.86975 0.95620 0.77588 0.83874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.54 10.48 -18.81 -0.20 -2.73 16 3 C 0.16 1.51 6.69 -39.03 -0.26 1.25 16 4 C -0.16 -1.38 9.97 -39.49 -0.39 -1.77 16 5 C -0.03 -0.33 9.53 -39.22 -0.37 -0.71 16 6 C -0.16 -2.10 5.88 -104.93 -0.62 -2.72 16 7 C 0.55 8.96 7.75 -12.47 -0.10 8.86 16 8 O -0.52 -10.04 13.68 5.29 0.07 -9.97 16 9 N -0.71 -10.91 5.08 -53.08 -0.27 -11.18 16 10 C 0.14 2.74 2.97 -66.11 -0.20 2.55 16 11 H 0.10 2.13 7.69 -51.93 -0.40 1.73 16 12 C 0.13 2.85 6.99 -3.07 -0.02 2.83 16 13 N -0.60 -15.35 3.39 -170.08 -0.58 -15.93 16 14 C -0.22 -6.13 10.27 -15.06 -0.15 -6.29 16 15 H 0.08 2.16 7.83 -52.49 -0.41 1.74 16 16 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 17 N -0.92 -26.33 10.09 55.49 0.56 -25.77 16 18 Si 0.92 21.89 29.55 -169.99 -5.02 16.86 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.13 3.07 5.62 -2.53 -0.01 3.05 16 23 C 0.07 1.24 4.04 -24.59 -0.10 1.14 16 24 H 0.06 1.04 8.00 -51.93 -0.42 0.62 16 25 O -0.57 -9.56 13.47 -35.23 -0.47 -10.04 16 26 C 0.05 0.69 6.35 -39.10 -0.25 0.44 16 27 Cl -0.02 -0.33 26.01 -51.86 -1.35 -1.68 16 28 C -0.22 -2.12 8.80 -39.46 -0.35 -2.46 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 31 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 32 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.14 1.07 6.39 -52.49 -0.34 0.73 16 34 H 0.39 4.83 6.54 -40.82 -0.27 4.56 16 35 H 0.03 0.64 8.03 -51.93 -0.42 0.22 16 36 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.11 2.89 5.87 -51.93 -0.31 2.59 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.38 4.81 9.12 45.56 0.42 5.23 16 41 H 0.14 1.09 6.27 -52.49 -0.33 0.76 16 LS Contribution 355.08 15.07 5.35 5.35 Total: -1.00 -33.91 355.08 -7.92 -41.83 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -4.08 Total: 6.38 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -1.93 Total: 6.86 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.29 Total: -52.87 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.60 Total: -22.74 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.35 Total: -1.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.91 -7.92 -41.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077854412.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.336 kcal (2) G-P(sol) polarization free energy of solvation -33.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds