Wall clock time and date at job start Sat Apr 11 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35908 * 117.00329 * 2 1 4 4 C 1.38824 * 119.97743 * 0.02562 * 3 2 1 5 5 C 1.38348 * 120.22822 * 179.97438 * 4 3 2 6 6 Cl 1.73606 * 119.91089 * 179.97438 * 5 4 3 7 7 C 1.38128 * 120.17835 * 359.97438 * 5 4 3 8 8 C 1.39541 * 119.95597 * 0.02562 * 7 5 4 9 9 C 1.47860 * 120.11959 * 180.02562 * 8 7 5 10 10 O 1.21553 * 120.00288 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99422 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72375 * 11 9 8 13 13 H 1.08997 * 110.64575 * 34.57494 * 12 11 9 14 14 C 1.54330 * 110.71995 * 271.43484 * 12 11 9 15 15 N 1.47020 * 107.27017 * 219.44336 * 14 12 11 16 16 C 1.36942 * 125.64728 * 178.97836 * 15 14 12 17 17 H 1.07996 * 120.00137 * 0.02562 * 16 15 14 18 18 C 1.38818 * 119.99917 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00115 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99914 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47073 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47160 * 119.99458 * 20 18 16 23 23 H 1.48501 * 109.46888 * 239.99702 * 20 18 16 24 24 C 1.47422 * 108.70501 * 358.94342 * 15 14 12 25 25 C 1.55117 * 104.94236 * 23.99999 * 24 15 14 26 26 H 1.09000 * 110.93651 * 81.21583 * 25 24 15 27 27 O 1.42904 * 111.16416 * 205.12973 * 25 24 15 28 28 C 1.38465 * 119.97489 * 180.28038 * 3 2 1 29 29 H 1.09005 * 109.46567 * 299.99702 * 1 2 3 30 30 H 1.09000 * 109.46915 * 59.99650 * 1 2 3 31 31 H 1.08997 * 109.47729 * 179.97438 * 1 2 3 32 32 H 1.08008 * 119.88363 * 359.97183 * 4 3 2 33 33 H 1.08004 * 120.02307 * 180.02562 * 7 5 4 34 34 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 35 35 H 1.08999 * 109.88505 * 338.85997 * 14 12 11 36 36 H 1.09000 * 109.87946 * 99.87271 * 14 12 11 37 37 H 0.97000 * 120.00380 * 180.02562 * 19 18 16 38 38 H 1.08999 * 110.36891 * 142.96707 * 24 15 14 39 39 H 1.09011 * 110.36727 * 265.28734 * 24 15 14 40 40 H 0.96702 * 114.00453 * 292.17554 * 27 25 24 41 41 H 1.07991 * 120.09423 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2896 2.3749 0.0005 5 6 1.9124 3.6103 0.0011 6 17 0.9583 5.0607 0.0011 7 6 3.2912 3.6929 0.0016 8 6 4.0590 2.5277 0.0011 9 6 5.5352 2.6118 0.0022 10 8 6.2019 1.5955 0.0013 11 7 6.1414 3.8155 0.0043 12 6 7.6040 3.8990 0.0116 13 1 8.0384 3.0819 -0.5644 14 6 8.1440 3.8951 1.4573 15 7 9.2596 4.8513 1.5091 16 6 9.9977 5.1569 2.6214 17 1 9.7772 4.6784 3.5641 18 6 11.0293 6.0820 2.5371 19 7 11.2984 6.6649 1.3881 20 14 12.0357 6.4995 4.0544 21 1 11.5360 5.7139 5.2113 22 1 13.4622 6.1673 3.8091 23 1 11.9086 7.9494 4.3491 24 6 9.4526 5.4258 0.1653 25 6 8.0784 5.2704 -0.5373 26 1 7.3966 6.0672 -0.2399 27 8 8.2269 5.2300 -1.9580 28 6 3.4289 1.2827 -0.0059 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2111 2.3159 0.0005 33 1 3.7747 4.6586 0.0025 34 1 5.6094 4.6266 0.0054 35 1 7.3587 4.2040 2.1472 36 1 8.4956 2.8971 1.7190 37 1 12.0194 7.3110 1.3290 38 1 9.7254 6.4786 0.2384 39 1 10.2180 4.8715 -0.3780 40 1 8.5219 6.0649 -2.3467 41 1 4.0181 0.3777 -0.0109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077879987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:54 Heat of formation + Delta-G solvation = -64.625963 kcal Electronic energy + Delta-G solvation = -26693.553284 eV Core-core repulsion = 22600.998514 eV Total energy + Delta-G solvation = -4092.554770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.81138 -39.67745 -38.12315 -37.57532 -36.51406 -35.11009 -34.20315 -31.97954 -31.33105 -30.65877 -28.40221 -27.76659 -27.03651 -24.81305 -23.64728 -22.90714 -20.92627 -20.59748 -20.02343 -18.88781 -17.22252 -17.16261 -16.87695 -16.43182 -16.29616 -16.22083 -15.67473 -15.17324 -14.81667 -14.68654 -14.18177 -14.05223 -13.91478 -13.56002 -13.32529 -12.93853 -12.74847 -12.47628 -12.35663 -12.27300 -11.94064 -11.62517 -11.54219 -11.41764 -11.32584 -11.16044 -11.00679 -10.86662 -10.19008 -10.03853 -9.94039 -9.75521 -9.34667 -9.31436 -8.85675 -8.74302 -8.70488 -6.94333 -5.74367 -3.16801 0.38869 0.81644 1.65420 2.63338 2.68973 3.23518 3.36525 3.42513 3.44918 3.51415 4.26824 4.39114 4.42828 4.55609 4.61059 4.67264 4.71163 4.81681 4.92365 5.02971 5.13791 5.24656 5.39611 5.58456 5.61124 5.63285 5.69819 5.82014 5.86159 5.99362 6.07401 6.15138 6.39643 6.64308 6.85218 6.85916 7.29171 7.49397 7.57767 7.70096 8.07093 8.21223 8.26040 9.11869 9.72199 10.34231 11.30031 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016270 B = 0.002469 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.585871 B =11339.951691 C =11640.368567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.135 3.865 4 C -0.183 4.183 5 C -0.002 4.002 6 Cl -0.059 7.059 7 C -0.115 4.115 8 C -0.073 4.073 9 C 0.559 3.441 10 O -0.527 6.527 11 N -0.705 5.705 12 C 0.141 3.859 13 H 0.104 0.896 14 C 0.130 3.870 15 N -0.600 5.600 16 C -0.221 4.221 17 H 0.081 0.919 18 C -0.011 4.011 19 N -0.924 5.924 20 Si 0.918 3.082 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.130 3.870 25 C 0.067 3.933 26 H 0.062 0.938 27 O -0.565 6.565 28 C -0.088 4.088 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.398 0.602 35 H 0.031 0.969 36 H 0.035 0.965 37 H 0.253 0.747 38 H 0.114 0.886 39 H 0.026 0.974 40 H 0.378 0.622 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.916 -5.612 -5.602 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.089 3.911 4 C -0.202 4.202 5 C -0.029 4.029 6 Cl -0.030 7.030 7 C -0.135 4.135 8 C -0.077 4.077 9 C 0.344 3.656 10 O -0.404 6.404 11 N -0.356 5.356 12 C 0.037 3.963 13 H 0.122 0.878 14 C 0.002 3.998 15 N -0.328 5.328 16 C -0.349 4.349 17 H 0.099 0.901 18 C -0.207 4.207 19 N -0.573 5.573 20 Si 0.748 3.252 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.004 3.996 25 C 0.006 3.994 26 H 0.080 0.920 27 O -0.370 6.370 28 C -0.107 4.107 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.234 0.766 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.131 0.869 39 H 0.044 0.956 40 H 0.225 0.775 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -23.442 -6.897 -5.446 25.035 hybrid contribution 0.035 1.496 0.697 1.651 sum -23.407 -5.400 -4.749 24.486 Atomic orbital electron populations 1.23153 0.77903 1.04475 1.01594 1.86147 1.21723 1.25773 1.88475 1.18650 0.91778 0.84130 0.96568 1.21224 1.00948 0.90564 1.07481 1.20435 0.91508 0.87654 1.03263 1.98394 1.71788 1.36071 1.96796 1.21134 0.91669 0.98945 1.01710 1.19712 0.93532 0.92660 1.01787 1.17974 0.86508 0.84050 0.77029 1.90808 1.65596 1.34710 1.49237 1.45907 1.07983 1.07702 1.74008 1.22089 0.77771 0.98796 0.97676 0.87834 1.21630 0.91258 0.94402 0.92461 1.44292 1.35719 1.46130 1.06620 1.19157 1.09315 1.18920 0.87557 0.90103 1.24807 0.98954 0.99449 0.97445 1.69738 1.32815 1.31823 1.22917 0.85945 0.79835 0.77820 0.81586 1.20433 1.21644 1.21688 1.22590 0.89835 1.03075 0.84090 1.23670 1.00103 0.94986 0.80628 0.92007 1.86415 1.90705 1.39573 1.20274 1.20606 0.91248 0.98700 1.00184 0.92325 0.92355 0.87766 0.83971 0.84162 0.76626 0.95102 0.94665 0.93623 0.86882 0.95599 0.77508 0.82940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.86 10.49 -19.45 -0.20 -3.07 16 3 C 0.13 1.37 6.68 -39.28 -0.26 1.11 16 4 C -0.18 -1.61 8.81 -39.32 -0.35 -1.95 16 5 C 0.00 -0.02 6.31 -39.58 -0.25 -0.27 16 6 Cl -0.06 -0.52 28.95 -51.86 -1.50 -2.02 16 7 C -0.11 -1.21 9.32 -39.14 -0.36 -1.57 16 8 C -0.07 -0.92 5.87 -104.99 -0.62 -1.54 16 9 C 0.56 8.77 7.77 -12.32 -0.10 8.67 16 10 O -0.53 -10.12 16.03 5.32 0.09 -10.03 16 11 N -0.71 -10.68 5.07 -52.97 -0.27 -10.95 16 12 C 0.14 2.64 3.00 -66.10 -0.20 2.44 16 13 H 0.10 2.14 7.62 -51.93 -0.40 1.75 16 14 C 0.13 2.79 7.00 -3.06 -0.02 2.77 16 15 N -0.60 -15.17 3.40 -169.93 -0.58 -15.74 16 16 C -0.22 -6.09 10.27 -15.05 -0.15 -6.24 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 18 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 19 N -0.92 -26.15 10.09 55.49 0.56 -25.59 16 20 Si 0.92 21.75 29.55 -169.99 -5.02 16.73 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.13 3.05 5.63 -2.42 -0.01 3.03 16 25 C 0.07 1.22 4.06 -24.47 -0.10 1.12 16 26 H 0.06 1.04 8.00 -51.93 -0.42 0.62 16 27 O -0.56 -9.48 13.48 -35.23 -0.47 -9.95 16 28 C -0.09 -1.05 9.53 -39.01 -0.37 -1.43 16 29 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 30 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.14 0.91 6.28 -52.48 -0.33 0.58 16 33 H 0.14 1.26 6.40 -52.48 -0.34 0.93 16 34 H 0.40 4.90 6.57 -40.82 -0.27 4.64 16 35 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.11 2.90 5.87 -51.93 -0.30 2.59 16 39 H 0.03 0.67 8.14 -51.92 -0.42 0.24 16 40 H 0.38 4.78 9.12 45.56 0.42 5.19 16 41 H 0.15 1.91 7.65 -52.49 -0.40 1.50 16 LS Contribution 359.35 15.07 5.42 5.42 Total: -1.00 -32.88 359.35 -7.95 -40.83 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -4.06 Total: 7.53 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -1.90 Total: 6.85 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.29 Total: -52.28 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.59 Total: -23.05 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.88 -7.95 -40.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077879987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.796 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds