Wall clock time and date at job start Sat Apr 11 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35673 * 117.00018 * 2 1 4 4 C 1.38700 * 120.13543 * 0.02562 * 3 2 1 5 5 C 1.38058 * 120.09716 * 180.02562 * 4 3 2 6 6 C 1.38636 * 120.37808 * 359.97438 * 5 4 3 7 7 Cl 1.73605 * 119.86338 * 179.97438 * 6 5 4 8 8 C 1.37896 * 120.27590 * 359.71635 * 6 5 4 9 9 C 1.39720 * 119.88845 * 0.58197 * 8 6 5 10 10 C 1.47529 * 120.18225 * 179.69430 * 9 8 6 11 11 O 1.21588 * 120.00438 * 179.72372 * 10 9 8 12 12 N 1.34778 * 120.00023 * 359.72895 * 10 9 8 13 13 C 1.46505 * 120.00074 * 180.02562 * 12 10 9 14 14 H 1.09004 * 110.88554 * 37.42252 * 13 12 10 15 15 C 1.54914 * 111.00202 * 273.54598 * 13 12 10 16 16 N 1.47426 * 104.82992 * 204.91694 * 15 13 12 17 17 C 1.36936 * 125.64583 * 204.09666 * 16 15 13 18 18 H 1.08004 * 120.00261 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00145 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99550 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00112 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47291 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46906 * 120.00302 * 21 19 17 24 24 H 1.48501 * 109.47001 * 239.99832 * 21 19 17 25 25 C 1.47018 * 108.70517 * 24.12623 * 16 15 13 26 26 C 1.54325 * 107.40412 * 358.86539 * 25 16 15 27 27 H 1.09000 * 110.72188 * 96.24097 * 26 25 16 28 28 O 1.42893 * 110.72271 * 219.52456 * 26 25 16 29 29 H 1.08998 * 109.46550 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46568 * 299.99630 * 1 2 3 31 31 H 1.08996 * 109.47288 * 59.99860 * 1 2 3 32 32 H 1.08004 * 119.95258 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.80506 * 180.02562 * 5 4 3 34 34 H 1.07995 * 120.05788 * 180.27878 * 8 6 5 35 35 H 0.96998 * 120.00184 * 359.97438 * 12 10 9 36 36 H 1.08999 * 110.37121 * 86.07429 * 15 13 12 37 37 H 1.09003 * 110.36718 * 323.75334 * 15 13 12 38 38 H 0.97004 * 119.99606 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.88241 * 118.36067 * 25 16 15 40 40 H 1.09000 * 109.88049 * 239.37196 * 25 16 15 41 41 H 0.96708 * 113.99585 * 298.54470 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2924 2.3739 0.0005 5 6 1.9200 3.6036 0.0000 6 6 3.3040 3.6843 -0.0005 7 17 4.0792 5.2376 -0.0019 8 6 4.0674 2.5360 0.0053 9 6 3.4441 1.2855 -0.0004 10 6 4.2546 0.0528 -0.0010 11 8 3.7088 -1.0337 -0.0009 12 7 5.6001 0.1309 -0.0014 13 6 6.4049 -1.0932 -0.0026 14 1 5.9424 -1.8619 -0.6218 15 6 6.6358 -1.6073 1.4405 16 7 7.8794 -2.3954 1.3659 17 6 8.2404 -3.3998 2.2238 18 1 7.5884 -3.6729 3.0404 19 6 9.4442 -4.0671 2.0440 20 7 10.2389 -3.7341 1.0491 21 14 9.9369 -5.4368 3.2148 22 1 8.8784 -5.6157 4.2407 23 1 10.1071 -6.7007 2.4542 24 1 11.2167 -5.0830 3.8797 25 6 8.6682 -1.9241 0.2182 26 6 7.8588 -0.8046 -0.4697 27 1 8.1866 0.1760 -0.1248 28 8 7.9654 -0.9040 -1.8912 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.2137 2.3190 0.0005 33 1 1.3293 4.5077 0.0008 34 1 5.1452 2.6030 0.0095 35 1 6.0356 0.9976 -0.0018 36 1 5.8050 -2.2384 1.7559 37 1 6.7584 -0.7692 2.1266 38 1 11.0804 -4.2001 0.9237 39 1 9.6252 -1.5317 0.5623 40 1 8.8336 -2.7446 -0.4800 41 1 8.8679 -0.8094 -2.2254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078123245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:57 Heat of formation + Delta-G solvation = -62.971273 kcal Electronic energy + Delta-G solvation = -27113.599597 eV Core-core repulsion = 23021.116580 eV Total energy + Delta-G solvation = -4092.483017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.83422 -39.24065 -38.00499 -37.62916 -36.41536 -35.03976 -34.04707 -32.17335 -31.29586 -30.28677 -28.39786 -27.58246 -26.95003 -24.77910 -23.85677 -22.46469 -20.93818 -20.50324 -20.05868 -18.72653 -17.54841 -17.09289 -16.73736 -16.54895 -16.08414 -15.65954 -15.57917 -15.08719 -14.66951 -14.53690 -14.13640 -14.00732 -13.80511 -13.53909 -13.10706 -12.87403 -12.69260 -12.47833 -12.34004 -12.15267 -12.01103 -11.64126 -11.43055 -11.28614 -11.23112 -10.98527 -10.86601 -10.81267 -10.11924 -9.88467 -9.81797 -9.74456 -9.53248 -9.30860 -8.81008 -8.62306 -8.45217 -6.89392 -5.74889 -3.08950 0.47628 0.83107 1.81270 2.73731 2.94954 3.24992 3.40326 3.46181 3.48667 3.59978 4.26417 4.29248 4.46249 4.60159 4.64045 4.80524 4.86448 4.87599 5.03668 5.17846 5.24744 5.31197 5.41485 5.46046 5.61234 5.66953 5.73003 5.73991 5.84415 6.06645 6.12361 6.15116 6.55384 6.66797 6.91411 7.02599 7.33760 7.47894 7.69892 7.76280 8.13073 8.18958 8.44359 9.16927 9.76945 10.40112 11.37089 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014632 B = 0.002782 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.115591 B =10062.232896 C =11067.286301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.273 6.273 3 C 0.190 3.810 4 C -0.209 4.209 5 C -0.046 4.046 6 C -0.084 4.084 7 Cl -0.067 7.067 8 C -0.037 4.037 9 C -0.153 4.153 10 C 0.559 3.441 11 O -0.511 6.511 12 N -0.713 5.713 13 C 0.142 3.858 14 H 0.103 0.897 15 C 0.130 3.870 16 N -0.600 5.600 17 C -0.226 4.226 18 H 0.081 0.919 19 C -0.009 4.009 20 N -0.924 5.924 21 Si 0.915 3.085 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.153 3.847 26 C 0.068 3.932 27 H 0.058 0.942 28 O -0.563 6.563 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.394 0.606 36 H 0.052 0.948 37 H 0.024 0.976 38 H 0.252 0.748 39 H 0.049 0.951 40 H 0.061 0.939 41 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.950 18.183 -4.375 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.183 6.183 3 C 0.141 3.859 4 C -0.228 4.228 5 C -0.065 4.065 6 C -0.110 4.110 7 Cl -0.038 7.038 8 C -0.057 4.057 9 C -0.157 4.157 10 C 0.345 3.655 11 O -0.387 6.387 12 N -0.364 5.364 13 C 0.037 3.963 14 H 0.121 0.879 15 C 0.003 3.997 16 N -0.328 5.328 17 C -0.354 4.354 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.572 5.572 21 Si 0.745 3.255 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.027 3.973 26 C 0.008 3.992 27 H 0.076 0.924 28 O -0.368 6.368 29 H 0.123 0.877 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.229 0.771 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -17.668 17.054 -4.295 24.928 hybrid contribution 1.036 0.216 0.558 1.197 sum -16.632 17.270 -3.736 24.266 Atomic orbital electron populations 1.23225 0.78481 1.04721 1.01179 1.86450 1.20935 1.24886 1.86048 1.19117 0.90980 0.85168 0.90627 1.21196 1.00687 0.91177 1.09758 1.20967 0.92354 0.98165 0.94998 1.20587 0.92910 0.86827 1.10718 1.98377 1.81103 1.27077 1.97249 1.21084 1.00395 0.89386 0.94803 1.19396 0.91032 0.93778 1.11508 1.17767 0.82085 0.88240 0.77411 1.90853 1.71404 1.28235 1.48193 1.45832 1.05639 1.09738 1.75227 1.22299 0.89280 0.86218 0.98546 0.87875 1.21857 0.90662 0.94731 0.92469 1.44252 1.17241 1.39550 1.31733 1.19149 1.02196 1.08299 1.05801 0.90070 1.24812 0.97060 0.99938 0.98638 1.69931 1.12221 1.43612 1.31437 0.85989 0.78090 0.81509 0.79866 1.20415 1.21687 1.21743 1.21837 0.92681 0.93140 0.89629 1.23482 0.95510 0.99065 0.81102 0.92442 1.86456 1.33210 1.96314 1.20860 0.87662 0.92433 0.92462 0.83849 0.84265 0.83855 0.77109 0.92985 0.95843 0.93734 0.93285 0.92077 0.77565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.14 16 2 O -0.27 -3.58 8.57 -40.61 -0.35 -3.93 16 3 C 0.19 2.29 6.70 -38.71 -0.26 2.03 16 4 C -0.21 -1.78 9.03 -39.48 -0.36 -2.13 16 5 C -0.05 -0.36 9.81 -39.50 -0.39 -0.75 16 6 C -0.08 -0.78 6.31 -39.56 -0.25 -1.03 16 7 Cl -0.07 -0.58 28.94 -51.86 -1.50 -2.08 16 8 C -0.04 -0.39 9.31 -39.15 -0.36 -0.75 16 9 C -0.15 -2.01 5.89 -104.85 -0.62 -2.62 16 10 C 0.56 9.29 7.76 -12.47 -0.10 9.20 16 11 O -0.51 -10.48 14.90 -16.60 -0.25 -10.73 16 12 N -0.71 -11.15 5.18 -52.63 -0.27 -11.42 16 13 C 0.14 2.73 3.05 -65.64 -0.20 2.53 16 14 H 0.10 2.28 7.73 -51.93 -0.40 1.88 16 15 C 0.13 2.85 6.93 -2.53 -0.02 2.83 16 16 N -0.60 -15.52 3.39 -170.07 -0.58 -16.10 16 17 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 18 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 20 N -0.92 -26.85 10.31 55.49 0.57 -26.28 16 21 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.15 3.63 5.14 -3.07 -0.02 3.62 16 26 C 0.07 1.27 3.97 -24.76 -0.10 1.17 16 27 H 0.06 0.94 8.00 -51.93 -0.42 0.52 16 28 O -0.56 -9.79 13.40 -35.23 -0.47 -10.26 16 29 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 32 H 0.14 0.80 6.30 -52.48 -0.33 0.47 16 33 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 34 H 0.14 1.27 6.40 -52.49 -0.34 0.93 16 35 H 0.39 4.91 6.55 -40.82 -0.27 4.64 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.05 1.25 7.50 -51.93 -0.39 0.86 16 40 H 0.06 1.63 7.29 -51.93 -0.38 1.26 16 41 H 0.38 5.02 9.11 45.56 0.42 5.44 16 LS Contribution 357.87 15.07 5.39 5.39 Total: -1.00 -34.95 357.87 -8.53 -43.49 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.14 Total: 6.36 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: -1.92 Total: 8.35 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.28 Total: -53.80 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -1.07 Total: -24.92 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.95 -8.53 -43.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078123245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.483 kcal (2) G-P(sol) polarization free energy of solvation -34.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds