Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35733 * 116.99873 * 2 1 4 4 C 1.38973 * 119.91571 * 359.97438 * 3 2 1 5 5 C 1.37704 * 120.10154 * 180.02562 * 4 3 2 6 6 C 1.39739 * 119.93441 * 0.02562 * 5 4 3 7 7 C 1.47607 * 120.08371 * 180.02562 * 6 5 4 8 8 O 1.21582 * 120.00209 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99917 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99704 * 179.97438 * 9 7 6 11 11 H 1.09003 * 110.64277 * 31.85896 * 10 9 7 12 12 C 1.54316 * 110.87374 * 268.60454 * 10 9 7 13 13 N 1.47020 * 107.27568 * 219.37532 * 12 10 9 14 14 C 1.36938 * 125.65236 * 178.97773 * 13 12 10 15 15 H 1.07998 * 120.00058 * 359.97438 * 14 13 12 16 16 C 1.38814 * 119.99997 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00091 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99701 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47071 * 89.99686 * 18 16 14 20 20 H 1.48497 * 109.47157 * 209.99349 * 18 16 14 21 21 H 1.48494 * 109.47207 * 329.99972 * 18 16 14 22 22 C 1.47422 * 108.70191 * 358.94070 * 13 12 10 23 23 C 1.54917 * 104.83074 * 24.12901 * 22 13 12 24 24 H 1.08998 * 111.00524 * 81.06438 * 23 22 13 25 25 O 1.42898 * 111.00398 * 204.87574 * 23 22 13 26 26 C 1.39721 * 119.83437 * 0.28072 * 6 5 4 27 27 C 1.37827 * 119.89008 * 359.41812 * 26 6 5 28 28 Cl 1.73600 * 119.96377 * 180.29804 * 27 26 6 29 29 H 1.08991 * 109.47038 * 60.00213 * 1 2 3 30 30 H 1.09001 * 109.46705 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47073 * 299.99776 * 1 2 3 32 32 H 1.08000 * 119.95077 * 0.02562 * 4 3 2 33 33 H 1.08000 * 120.03329 * 180.02562 * 5 4 3 34 34 H 0.97001 * 119.99595 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.88340 * 338.79879 * 12 10 9 36 36 H 1.09005 * 109.88355 * 99.80639 * 12 10 9 37 37 H 0.96998 * 119.99446 * 180.02562 * 17 16 14 38 38 H 1.08998 * 110.36873 * 265.28987 * 22 13 12 39 39 H 1.09005 * 110.36491 * 142.96394 * 22 13 12 40 40 H 0.96701 * 113.99799 * 298.54877 * 25 23 22 41 41 H 1.07989 * 120.05560 * 179.72320 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2866 2.3738 -0.0005 5 6 1.9077 3.6028 -0.0011 6 6 3.3031 3.6789 -0.0016 7 6 3.9723 4.9945 -0.0016 8 8 3.3095 6.0138 -0.0016 9 7 5.3182 5.0659 -0.0027 10 6 5.9824 6.3717 -0.0032 11 1 5.3848 7.1070 0.5356 12 6 6.2619 6.8458 -1.4449 13 7 7.5861 7.4843 -1.4456 14 6 8.2129 8.0212 -2.5384 15 1 7.7304 7.9956 -3.5043 16 6 9.4683 8.5983 -2.4046 17 7 10.0560 8.6299 -1.2274 18 14 10.3234 9.3299 -3.8955 19 1 9.9525 10.7620 -4.0257 20 1 11.7944 9.2127 -3.7295 21 1 9.9030 8.5969 -5.1166 22 6 8.1273 7.4518 -0.0746 23 6 7.4040 6.2646 0.6091 24 1 7.8729 5.3168 0.3447 25 8 7.3660 6.4361 2.0272 26 6 4.0631 2.5065 -0.0076 27 6 3.4342 1.2801 -0.0007 28 17 4.3767 -0.1777 -0.0002 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2082 2.3147 -0.0005 33 1 1.3171 4.5070 -0.0011 34 1 5.8470 4.2527 -0.0030 35 1 6.2616 5.9920 -2.1225 36 1 5.5016 7.5636 -1.7531 37 1 10.9331 9.0335 -1.1340 38 1 7.9017 8.3832 0.4445 39 1 9.2034 7.2791 -0.0956 40 1 8.2386 6.4739 2.4423 41 1 5.1416 2.5612 -0.0125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078151797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -64.258514 kcal Electronic energy + Delta-G solvation = -26708.807983 eV Core-core repulsion = 22616.269148 eV Total energy + Delta-G solvation = -4092.538836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.80780 -39.70300 -38.10450 -37.34652 -36.54071 -35.08808 -34.18623 -31.96692 -31.25745 -30.71767 -28.41826 -27.86342 -26.96450 -24.68395 -23.48267 -23.00782 -20.89142 -20.57882 -20.01769 -18.85767 -17.85326 -17.16491 -16.78342 -16.63059 -16.30981 -15.67759 -15.54009 -14.94296 -14.75042 -14.48020 -14.35128 -14.10766 -13.87530 -13.49064 -13.42964 -13.05338 -12.81312 -12.49858 -12.35497 -11.95426 -11.90419 -11.52767 -11.48804 -11.45585 -11.28532 -11.20585 -11.03095 -10.84971 -10.20685 -9.99645 -9.92623 -9.71450 -9.36031 -9.33771 -8.87960 -8.73930 -8.56726 -6.94585 -5.74417 -3.16795 0.51911 0.75623 1.83340 2.65793 2.68396 3.21089 3.37050 3.42187 3.43851 3.56056 4.24242 4.36767 4.38984 4.57958 4.63029 4.69018 4.72494 4.77793 4.98575 5.03559 5.19300 5.26559 5.39826 5.48848 5.61276 5.63425 5.72997 5.83910 5.93166 6.06678 6.09165 6.15248 6.42512 6.64050 6.73702 6.88574 7.28757 7.49609 7.61434 7.70089 8.08358 8.22663 8.30922 9.11722 9.72177 10.34304 11.30000 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018100 B = 0.002412 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.553037 B =11604.545305 C =11783.830284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.302 6.302 3 C 0.159 3.841 4 C -0.207 4.207 5 C -0.014 4.014 6 C -0.154 4.154 7 C 0.562 3.438 8 O -0.536 6.536 9 N -0.708 5.708 10 C 0.141 3.859 11 H 0.104 0.896 12 C 0.130 3.870 13 N -0.600 5.600 14 C -0.222 4.222 15 H 0.080 0.920 16 C -0.011 4.011 17 N -0.925 5.925 18 Si 0.918 3.082 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.129 3.871 23 C 0.066 3.934 24 H 0.062 0.938 25 O -0.566 6.566 26 C -0.038 4.038 27 C -0.077 4.077 28 Cl -0.051 7.051 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.397 0.603 35 H 0.031 0.969 36 H 0.034 0.966 37 H 0.254 0.746 38 H 0.026 0.974 39 H 0.114 0.886 40 H 0.378 0.622 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.035 -18.413 5.269 24.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.214 6.214 3 C 0.111 3.889 4 C -0.226 4.226 5 C -0.033 4.033 6 C -0.157 4.157 7 C 0.349 3.651 8 O -0.414 6.414 9 N -0.359 5.359 10 C 0.037 3.963 11 H 0.122 0.878 12 C 0.002 3.998 13 N -0.327 5.327 14 C -0.350 4.350 15 H 0.098 0.902 16 C -0.206 4.206 17 N -0.573 5.573 18 Si 0.748 3.252 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.003 3.997 23 C 0.006 3.994 24 H 0.080 0.920 25 O -0.371 6.371 26 C -0.058 4.058 27 C -0.105 4.105 28 Cl -0.022 7.022 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.079 0.921 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.232 0.768 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.131 0.869 40 H 0.225 0.775 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.784 -17.902 5.099 25.064 hybrid contribution 1.133 0.000 -0.675 1.319 sum -15.650 -17.903 4.424 24.187 Atomic orbital electron populations 1.23188 0.77591 1.04537 1.01830 1.86132 1.21954 1.25827 1.87526 1.18916 0.90500 0.85289 0.94159 1.21192 1.00592 0.91186 1.09604 1.21182 0.93202 0.97985 0.90893 1.19882 0.94255 0.92753 1.08855 1.17959 0.82343 0.88246 0.76549 1.90791 1.64589 1.35951 1.50022 1.45892 1.06000 1.09667 1.74294 1.22060 0.92684 0.84306 0.97289 0.87807 1.21624 0.89286 0.96147 0.92695 1.44282 1.14463 1.68569 1.05432 1.19106 0.98471 1.30232 0.87227 0.90171 1.24804 0.97465 1.01080 0.97273 1.69730 1.16260 1.50067 1.21262 0.86015 0.78672 0.79040 0.81436 1.21511 1.21595 1.20616 1.22582 1.00868 0.92431 0.83831 1.23651 0.95153 1.00065 0.80549 0.92024 1.86406 1.34058 1.96613 1.20010 1.21099 1.00558 0.89302 0.94800 1.19981 0.88825 0.88966 1.12701 1.98381 1.71561 1.35148 1.97138 0.92113 0.87746 0.92139 0.83838 0.83503 0.76764 0.95105 0.94762 0.93571 0.95600 0.86893 0.77469 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.30 -2.66 9.94 -18.91 -0.19 -2.84 16 3 C 0.16 1.55 6.69 -39.00 -0.26 1.29 16 4 C -0.21 -1.79 9.01 -39.50 -0.36 -2.14 16 5 C -0.01 -0.14 9.58 -39.22 -0.38 -0.52 16 6 C -0.15 -1.89 5.87 -104.96 -0.62 -2.51 16 7 C 0.56 8.78 7.76 -12.44 -0.10 8.68 16 8 O -0.54 -10.18 15.98 5.29 0.08 -10.10 16 9 N -0.71 -10.82 5.06 -53.05 -0.27 -11.09 16 10 C 0.14 2.65 3.05 -66.10 -0.20 2.45 16 11 H 0.10 2.16 7.55 -51.93 -0.39 1.77 16 12 C 0.13 2.79 7.00 -3.07 -0.02 2.77 16 13 N -0.60 -15.17 3.39 -170.07 -0.58 -15.75 16 14 C -0.22 -6.11 10.27 -15.06 -0.15 -6.27 16 15 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 16 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 17 N -0.92 -26.15 10.09 55.49 0.56 -25.59 16 18 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.13 3.02 5.62 -2.53 -0.01 3.00 16 23 C 0.07 1.23 4.05 -24.58 -0.10 1.13 16 24 H 0.06 1.06 8.01 -51.93 -0.42 0.64 16 25 O -0.57 -9.63 13.47 -35.23 -0.47 -10.10 16 26 C -0.04 -0.41 9.31 -39.18 -0.36 -0.77 16 27 C -0.08 -0.82 6.33 -39.42 -0.25 -1.07 16 28 Cl -0.05 -0.53 28.49 -51.86 -1.48 -2.01 16 29 H 0.06 0.22 7.65 -51.93 -0.40 -0.17 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 32 H 0.14 0.82 6.28 -52.49 -0.33 0.49 16 33 H 0.15 1.51 7.64 -52.49 -0.40 1.11 16 34 H 0.40 4.98 6.59 -40.82 -0.27 4.71 16 35 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.11 2.90 5.88 -51.93 -0.31 2.59 16 40 H 0.38 4.94 9.11 45.56 0.42 5.35 16 41 H 0.14 1.32 6.39 -52.49 -0.34 0.99 16 LS Contribution 358.50 15.07 5.40 5.40 Total: -1.00 -33.35 358.50 -7.94 -41.28 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -4.06 Total: 7.33 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -1.92 Total: 6.74 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.29 Total: -52.43 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.58 Total: -23.04 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.48 Total: -2.01 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.35 -7.94 -41.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078151797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.975 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds