Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47462 * 2 1 4 4 C 1.34775 * 120.00202 * 269.99787 * 3 2 1 5 5 O 1.21284 * 120.00261 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.99920 * 0.02562 * 4 3 2 7 7 S 1.81001 * 109.47277 * 179.97438 * 6 4 3 8 8 C 1.76199 * 99.99753 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00267 * 0.02562 * 8 7 6 10 10 C 1.38804 * 119.99808 * 179.97438 * 8 7 6 11 11 N 1.31633 * 119.99921 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00144 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47222 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47296 * 119.99818 * 12 10 8 15 15 H 1.48503 * 109.47316 * 240.00220 * 12 10 8 16 16 C 1.46507 * 119.99973 * 89.99646 * 3 2 1 17 17 C 1.53493 * 114.20309 * 120.00061 * 16 3 2 18 18 N 1.47069 * 87.98465 * 87.52065 * 17 16 3 19 19 C 1.34775 * 136.06072 * 207.08330 * 18 17 16 20 20 O 1.21502 * 120.00042 * 359.97438 * 19 18 17 21 21 C 1.48274 * 120.00233 * 180.02562 * 19 18 17 22 22 C 1.47490 * 128.71306 * 179.97438 * 21 19 18 23 23 N 1.30644 * 102.72032 * 180.02562 * 22 21 19 24 24 O 1.20843 * 109.61556 * 359.97438 * 23 22 21 25 25 N 1.20900 * 115.90937 * 0.02562 * 24 23 22 26 26 C 1.47071 * 87.88612 * 27.34113 * 18 17 16 27 27 H 1.09002 * 109.46803 * 299.99909 * 1 2 3 28 28 H 1.08995 * 109.46771 * 60.00128 * 1 2 3 29 29 H 1.09000 * 109.46985 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47347 * 239.99667 * 2 1 3 31 31 H 1.09004 * 109.46941 * 120.00135 * 2 1 3 32 32 H 1.09005 * 109.46721 * 300.00090 * 6 4 3 33 33 H 1.08999 * 109.47377 * 59.99103 * 6 4 3 34 34 H 0.96996 * 119.99823 * 179.97438 * 11 10 8 35 35 H 1.09000 * 113.41414 * 346.80039 * 16 3 2 36 36 H 1.09004 * 113.47418 * 332.74394 * 17 16 3 37 37 H 1.08999 * 113.46967 * 202.29556 * 17 16 3 38 38 H 1.07999 * 128.64196 * 359.97438 * 22 21 19 39 39 H 1.08999 * 113.46917 * 87.43641 * 26 18 17 40 40 H 1.08996 * 113.46473 * 217.88284 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2431 2.0165 -1.1672 5 8 2.6470 3.1601 -1.1672 6 6 1.9914 1.3063 -2.4723 7 16 2.3830 2.4154 -3.8481 8 6 2.0098 1.3593 -5.2082 9 1 1.6546 0.3550 -5.0304 10 6 2.1713 1.8184 -6.5081 11 7 2.6037 3.0427 -6.7247 12 14 1.7763 0.6986 -7.9500 13 1 1.3120 -0.6173 -7.4422 14 1 0.7075 1.3145 -8.7768 15 1 2.9947 0.5085 -8.7775 16 6 2.2626 2.0718 1.2688 17 6 3.7126 2.5358 1.4638 18 7 3.3541 3.7790 0.7647 19 6 4.0045 4.6978 0.0236 20 8 5.1944 4.5748 -0.1895 21 6 3.2683 5.8594 -0.5307 22 6 3.7817 6.9677 -1.3574 23 7 2.7155 7.6961 -1.5561 24 8 1.7685 7.1884 -1.0033 25 7 1.9930 6.1602 -0.4083 26 6 1.9748 3.5818 1.2354 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.6213 0.4185 -2.5301 33 1 0.9434 1.0125 -2.5299 34 1 2.7169 3.3634 -7.6330 35 1 1.8382 1.5570 2.1308 36 1 4.4392 1.9283 0.9241 37 1 3.9829 2.6880 2.5088 38 1 4.7885 7.1359 -1.7099 39 1 1.7870 4.0097 2.2202 40 1 1.2209 3.8654 0.5012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079341637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = 127.497975 kcal Electronic energy + Delta-G solvation = -28283.338660 eV Core-core repulsion = 24233.451466 eV Total energy + Delta-G solvation = -4049.887193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.57893 -41.20576 -38.73266 -37.23138 -35.61434 -34.42495 -34.13085 -32.45163 -30.77683 -29.69857 -28.53571 -26.34328 -25.54673 -25.28115 -23.76648 -23.35994 -22.44907 -19.85220 -18.73211 -18.59529 -17.95388 -17.70655 -17.29022 -16.89296 -16.39042 -15.92891 -15.27366 -14.95384 -14.82562 -14.56638 -14.11642 -13.93509 -13.51788 -13.41658 -13.24595 -13.04002 -12.76338 -12.57214 -12.49660 -12.18782 -11.92339 -11.78034 -11.60896 -11.23317 -11.10964 -11.08200 -11.04211 -11.00465 -10.77935 -10.42745 -10.05556 -9.82810 -9.45128 -9.09536 -8.73485 -8.28504 -8.25270 -6.52407 -6.24061 -3.94618 1.12930 1.62490 2.60995 2.74391 2.91788 3.19656 3.22002 3.28680 3.35863 3.51693 3.67225 3.78605 4.08384 4.16598 4.17851 4.54245 4.79760 4.82929 4.90331 5.07019 5.10370 5.10566 5.12656 5.18909 5.27020 5.42158 5.48135 5.52085 5.58482 5.62771 5.69468 5.71066 5.86923 5.94657 5.99441 6.16273 6.59051 7.41622 7.57235 7.72909 8.20287 8.32696 8.51526 8.71948 9.21452 10.83393 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009764 B = 0.004740 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.990606 B = 5906.134758 C = 7878.058647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.110 3.890 3 N -0.604 5.604 4 C 0.534 3.466 5 O -0.500 6.500 6 C -0.148 4.148 7 S -0.061 6.061 8 C -0.534 4.534 9 H 0.072 0.928 10 C 0.074 3.926 11 N -0.867 5.867 12 Si 0.918 3.082 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.280 1.280 16 C 0.112 3.888 17 C 0.093 3.907 18 N -0.600 5.600 19 C 0.668 3.332 20 O -0.530 6.530 21 C -0.006 4.006 22 C 0.033 3.967 23 N -0.358 5.358 24 O 0.331 5.669 25 N -0.318 5.318 26 C 0.097 3.903 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.268 0.732 35 H 0.120 0.880 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.222 0.778 39 H 0.091 0.909 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.925 -2.460 20.390 20.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.013 4.013 3 N -0.340 5.340 4 C 0.322 3.678 5 O -0.372 6.372 6 C -0.299 4.299 7 S 0.165 5.835 8 C -0.682 4.682 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.502 5.502 12 Si 0.744 3.256 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.205 1.205 16 C 0.006 3.994 17 C -0.031 4.031 18 N -0.334 5.334 19 C 0.456 3.544 20 O -0.406 6.406 21 C -0.172 4.172 22 C -0.153 4.153 23 N -0.082 5.082 24 O 0.107 5.893 25 N -0.040 5.040 26 C -0.027 4.027 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.138 0.862 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.239 0.761 39 H 0.109 0.891 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.618 -0.085 19.969 20.140 hybrid contribution 0.094 -2.544 -1.160 2.797 sum -2.524 -2.629 18.809 19.159 Atomic orbital electron populations 1.22233 0.95797 1.02274 1.02788 1.21561 0.94501 0.81828 1.03433 1.47748 1.67741 1.14238 1.04259 1.20328 0.76233 0.86815 0.84387 1.90652 1.42675 1.17456 1.86459 1.23580 1.04537 1.04479 0.97291 1.85385 1.86895 1.17816 0.93379 1.22871 1.51725 1.01444 0.92179 0.90981 1.24992 0.94649 0.95529 0.98395 1.70026 1.42968 1.15646 1.21581 0.86125 0.78203 0.80067 0.81157 1.19617 1.20547 1.20536 1.22325 0.95973 0.93402 0.87703 1.23496 0.98092 0.84278 0.97258 1.48692 1.11656 1.23984 1.49024 1.15300 0.84107 0.78289 0.76716 1.90797 1.14092 1.75807 1.59859 1.25872 0.89423 0.99353 1.02566 1.27629 1.00944 0.89669 0.97057 1.74993 0.96294 1.21904 1.14977 1.85035 1.32323 1.26321 1.45606 1.75298 1.16544 0.99918 1.12242 1.23372 0.86221 0.93211 0.99941 0.92382 0.91944 0.91543 0.89814 0.90390 0.89574 0.89405 0.92231 0.86226 0.89988 0.88793 0.76126 0.89145 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.24 37.16 0.38 -1.04 16 2 C 0.11 0.97 5.95 -4.04 -0.02 0.94 16 3 N -0.60 -7.18 2.74 -165.73 -0.45 -7.63 16 4 C 0.53 9.25 7.25 -10.99 -0.08 9.17 16 5 O -0.50 -10.02 8.89 5.55 0.05 -9.97 16 6 C -0.15 -2.91 4.71 36.01 0.17 -2.74 16 7 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 8 C -0.53 -15.18 9.50 30.94 0.29 -14.88 16 9 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 10 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 11 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 12 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.11 1.02 4.88 -67.68 -0.33 0.69 16 17 C 0.09 0.99 8.18 -8.50 -0.07 0.92 16 18 N -0.60 -8.69 2.09 -186.01 -0.39 -9.08 16 19 C 0.67 12.04 5.94 -12.13 -0.07 11.97 16 20 O -0.53 -11.01 17.82 5.36 0.10 -10.91 16 21 C -0.01 -0.11 6.86 -80.07 -0.55 -0.66 16 22 C 0.03 0.51 12.63 -14.29 -0.18 0.33 16 23 N -0.36 -5.72 12.22 30.71 0.38 -5.34 16 24 O 0.33 5.28 11.65 27.26 0.32 5.59 16 25 N -0.32 -5.22 11.12 33.49 0.37 -4.85 16 26 C 0.10 1.07 6.85 -8.36 -0.06 1.02 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.67 7.22 -51.93 -0.37 0.29 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.82 6.44 -51.93 -0.33 0.49 16 31 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 32 H 0.09 1.61 7.40 -51.91 -0.38 1.22 16 33 H 0.09 1.62 7.18 -51.92 -0.37 1.25 16 34 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.12 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.22 2.81 8.06 -52.49 -0.42 2.39 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.09 1.30 6.84 -51.93 -0.36 0.94 16 LS Contribution 355.82 15.07 5.36 5.36 Total: -1.00 -37.04 355.82 -6.13 -43.17 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.74 Total: -1.08 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -0.61 Total: 7.73 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.64 Total: -52.52 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.46 Total: -15.29 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.04 -6.13 -43.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079341637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.668 kcal (2) G-P(sol) polarization free energy of solvation -37.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds