Wall clock time and date at job start Sat Apr 11 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 119.99986 * 2 1 4 4 H 1.48501 * 109.47020 * 85.01574 * 3 2 1 5 5 H 1.48500 * 109.47256 * 205.01740 * 3 2 1 6 6 H 1.48499 * 109.47251 * 325.02132 * 3 2 1 7 7 C 1.38811 * 119.99858 * 179.73403 * 2 1 3 8 8 H 1.08001 * 120.00046 * 189.07100 * 7 2 1 9 9 N 1.36931 * 120.00089 * 9.06041 * 7 2 1 10 10 C 1.47027 * 125.64779 * 190.75026 * 9 7 2 11 11 C 1.54331 * 107.26870 * 181.02448 * 10 9 7 12 12 H 1.09000 * 110.71500 * 140.55707 * 11 10 9 13 13 N 1.46494 * 110.72180 * 263.65238 * 11 10 9 14 14 C 1.34779 * 120.00231 * 273.54781 * 13 11 10 15 15 O 1.21575 * 119.99703 * 0.02562 * 14 13 11 16 16 C 1.47660 * 120.00015 * 180.02562 * 14 13 11 17 17 N 1.31830 * 126.46290 * 0.02562 * 16 14 13 18 18 N 1.28469 * 110.13944 * 180.02562 * 17 16 14 19 19 H 0.96996 * 124.93776 * 180.02562 * 18 17 16 20 20 C 1.35645 * 110.12745 * 0.02562 * 18 17 16 21 21 C 1.50701 * 126.43264 * 180.02562 * 20 18 17 22 22 C 1.53001 * 117.49868 * 8.59151 * 21 20 18 23 23 C 1.52990 * 60.00166 * 252.51584 * 22 21 20 24 24 C 1.35458 * 107.13469 * 359.72402 * 20 18 17 25 25 Cl 1.73600 * 127.24230 * 180.25358 * 24 20 18 26 26 C 1.55156 * 102.94195 * 22.19623 * 11 10 9 27 27 H 1.09004 * 110.99912 * 82.57000 * 26 11 10 28 28 O 1.42902 * 111.00222 * 206.38059 * 26 11 10 29 29 C 1.47430 * 125.64936 * 10.45140 * 9 7 2 30 30 H 0.96996 * 119.99990 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.88447 * 300.44373 * 10 9 7 32 32 H 1.08996 * 109.87984 * 61.61484 * 10 9 7 33 33 H 0.97006 * 119.99769 * 93.55205 * 13 11 10 34 34 H 1.08994 * 115.55376 * 154.30829 * 21 20 18 35 35 H 1.09003 * 117.49721 * 0.02562 * 22 21 20 36 36 H 1.08997 * 117.49722 * 145.02040 * 22 21 20 37 37 H 1.09005 * 117.49778 * 252.50776 * 23 22 21 38 38 H 1.09006 * 117.50245 * 107.49507 * 23 22 21 39 39 H 0.96700 * 113.99624 * 180.02562 * 28 26 11 40 40 H 1.09006 * 110.36387 * 274.73985 * 29 9 7 41 41 H 1.08994 * 110.36753 * 37.06093 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5964 1.4120 -0.5921 6 1 1.5042 2.6200 -0.8026 7 6 2.0102 -1.2021 0.0056 8 1 3.0801 -1.2073 0.1531 9 7 1.3384 -2.3815 -0.1757 10 6 1.8978 -3.7261 0.0262 11 6 0.7881 -4.7408 -0.3212 12 1 1.2014 -5.5963 -0.8554 13 7 0.0872 -5.1771 0.8890 14 6 0.5673 -6.2091 1.6107 15 8 1.5823 -6.7777 1.2577 16 6 -0.1395 -6.6492 2.8302 17 7 -1.2438 -6.1280 3.3270 18 7 -1.5852 -6.7521 4.3967 19 1 -2.3650 -6.5457 4.9353 20 6 -0.6967 -7.7418 4.6635 21 6 -0.7451 -8.6982 5.8270 22 6 -2.0025 -8.6874 6.6986 23 6 -0.6951 -8.1011 7.2348 24 6 0.2384 -7.7133 3.6839 25 17 1.6135 -8.7591 3.5133 26 6 -0.1554 -3.9224 -1.2418 27 1 0.2127 -3.9116 -2.2678 28 8 -1.4911 -4.4272 -1.1849 29 6 -0.0675 -2.5130 -0.5996 30 1 -0.4850 0.8400 0.0004 31 1 2.7543 -3.8738 -0.6314 32 1 2.2004 -3.8494 1.0660 33 1 -0.7224 -4.7232 1.1708 34 1 -0.2502 -9.6564 5.6689 35 1 -2.7950 -7.9888 6.4302 36 1 -2.3352 -9.6387 7.1139 37 1 -0.1676 -8.6666 8.0030 38 1 -0.6272 -7.0164 7.3194 39 1 -2.1170 -3.9474 -1.7445 40 1 -0.7316 -2.4442 0.2620 41 1 -0.3159 -1.7462 -1.3333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083603689.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:19 Heat of formation + Delta-G solvation = 44.478648 kcal Electronic energy + Delta-G solvation = -27190.597330 eV Core-core repulsion = 23135.066442 eV Total energy + Delta-G solvation = -4055.530888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.95516 -39.42614 -37.76520 -37.50108 -36.48393 -35.04887 -33.69324 -32.09329 -31.43894 -30.66771 -28.40630 -27.12857 -24.79376 -24.16300 -23.36607 -22.87952 -21.31875 -20.48514 -20.14072 -19.58583 -18.17137 -17.18788 -16.90730 -16.53784 -16.27753 -15.92000 -15.48105 -14.94078 -14.76426 -14.35844 -14.27592 -13.91517 -13.77295 -12.98664 -12.88534 -12.68848 -12.33809 -12.26459 -12.12875 -12.11265 -11.56383 -11.37925 -11.29564 -11.15081 -11.04526 -10.89361 -10.81437 -10.65556 -10.17648 -10.13097 -9.85371 -9.67843 -9.48410 -9.22330 -8.83126 -8.64922 -8.51692 -6.84547 -5.78244 -3.11341 1.38717 1.67057 1.93452 2.74440 3.33689 3.37987 3.40226 3.44459 3.46590 3.57942 3.98792 4.21379 4.36060 4.42110 4.47469 4.59441 4.61703 5.06919 5.08860 5.24985 5.29633 5.36939 5.40596 5.50024 5.56412 5.58830 5.72313 5.80150 5.84905 6.17081 6.24145 6.53814 6.60829 6.71353 7.03438 7.29523 7.46846 7.50871 7.71898 7.98755 8.07427 8.21192 8.56317 9.14886 9.76388 10.42392 11.34752 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014886 B = 0.002870 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.483854 B = 9753.362300 C =10137.070317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.599 5.599 10 C 0.125 3.875 11 C 0.146 3.854 12 H 0.094 0.906 13 N -0.682 5.682 14 C 0.597 3.403 15 O -0.526 6.526 16 C 0.015 3.985 17 N -0.234 5.234 18 N -0.376 5.376 19 H 0.449 0.551 20 C 0.056 3.944 21 C -0.090 4.090 22 C -0.175 4.175 23 C -0.163 4.163 24 C -0.094 4.094 25 Cl -0.006 7.006 26 C 0.062 3.938 27 H 0.072 0.928 28 O -0.563 6.563 29 C 0.149 3.851 30 H 0.253 0.747 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.412 0.588 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.378 0.622 40 H 0.036 0.964 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.731 -17.958 10.656 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.205 1.205 6 H -0.216 1.216 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.327 5.327 10 C -0.002 4.002 11 C 0.041 3.959 12 H 0.112 0.888 13 N -0.332 5.332 14 C 0.379 3.621 15 O -0.400 6.400 16 C -0.148 4.148 17 N -0.069 5.069 18 N -0.091 5.091 19 H 0.294 0.706 20 C -0.070 4.070 21 C -0.109 4.109 22 C -0.212 4.212 23 C -0.201 4.201 24 C -0.131 4.131 25 Cl 0.022 6.978 26 C 0.002 3.998 27 H 0.090 0.910 28 O -0.368 6.368 29 C 0.024 3.976 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.248 0.752 34 H 0.153 0.847 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.117 0.883 39 H 0.225 0.775 40 H 0.054 0.946 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.393 -17.799 10.538 21.650 hybrid contribution 0.002 1.054 0.287 1.092 sum -6.391 -16.746 10.826 20.939 Atomic orbital electron populations 1.69934 1.04951 1.25196 1.56593 1.24831 0.95675 0.97854 1.02037 0.86097 0.78780 0.83361 0.77506 1.21637 1.20521 1.21637 1.19046 0.91139 0.82437 1.42908 0.90411 1.44324 1.09082 0.99995 1.79268 1.21780 0.94060 0.85408 0.98913 1.22023 0.92637 0.96727 0.84542 0.88828 1.45512 1.29471 1.32518 1.25738 1.16708 0.83751 0.80422 0.81171 1.90814 1.23753 1.56212 1.69242 1.21982 0.95417 0.97783 0.99627 1.73772 1.14422 1.19652 0.99066 1.43148 1.22586 1.23577 1.19801 0.70550 1.20099 0.93014 0.95221 0.98654 1.20499 1.04166 0.98727 0.87541 1.23042 0.91138 1.03839 1.03169 1.23126 1.00198 1.01584 0.95164 1.20365 0.95398 0.99249 0.98096 1.98353 1.38934 1.63188 1.97299 1.23723 0.81894 0.96291 0.97921 0.90976 1.86375 1.19214 1.59959 1.71219 1.22065 0.86773 0.90960 0.97852 0.93720 0.94395 0.94816 0.75219 0.84727 0.88950 0.87318 0.87377 0.88292 0.77547 0.94583 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.45 10.68 55.49 0.59 -25.86 16 2 C -0.01 -0.21 5.40 -17.43 -0.09 -0.30 16 3 Si 0.91 21.98 29.56 -169.99 -5.03 16.96 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.23 -6.33 10.24 -15.06 -0.15 -6.48 16 8 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 9 N -0.60 -15.24 3.39 -169.93 -0.58 -15.82 16 10 C 0.13 2.76 6.98 -3.06 -0.02 2.74 16 11 C 0.15 2.81 3.13 -66.10 -0.21 2.60 16 12 H 0.09 1.74 7.69 -51.93 -0.40 1.34 16 13 N -0.68 -12.74 4.78 -53.03 -0.25 -12.99 16 14 C 0.60 11.17 7.82 -12.41 -0.10 11.07 16 15 O -0.53 -10.78 15.60 5.30 0.08 -10.69 16 16 C 0.01 0.24 7.13 -82.76 -0.59 -0.35 16 17 N -0.23 -3.36 11.91 33.42 0.40 -2.96 16 18 N -0.38 -3.89 6.77 33.62 0.23 -3.66 16 19 H 0.45 2.92 7.94 -190.44 -1.51 1.41 16 20 C 0.06 0.60 6.75 -81.90 -0.55 0.05 16 21 C -0.09 -0.65 6.13 -91.77 -0.56 -1.21 16 22 C -0.17 -0.83 10.14 -26.74 -0.27 -1.10 16 23 C -0.16 -0.92 10.23 -26.74 -0.27 -1.19 16 24 C -0.09 -1.32 6.79 -39.31 -0.27 -1.59 16 25 Cl -0.01 -0.09 28.02 -51.86 -1.45 -1.54 16 26 C 0.06 1.15 4.23 -24.47 -0.10 1.05 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 28 O -0.56 -9.18 12.65 -35.23 -0.45 -9.63 16 29 C 0.15 3.46 5.14 -2.41 -0.01 3.45 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.03 0.80 8.04 -51.93 -0.42 0.38 16 33 H 0.41 7.71 7.93 -40.82 -0.32 7.38 16 34 H 0.13 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.09 0.35 7.16 -51.93 -0.37 -0.02 16 36 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.38 4.65 9.12 45.56 0.42 5.06 16 40 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 41 H 0.07 1.84 6.95 -51.93 -0.36 1.48 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -33.87 362.69 -9.66 -43.53 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.47 Total: 8.47 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: -3.21 Total: 8.73 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.39 Total: -61.29 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.36 Total: -20.32 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.96 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.45 Total: -1.54 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.87 -9.66 -43.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083603689.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.012 kcal (2) G-P(sol) polarization free energy of solvation -33.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds