Wall clock time and date at job start Sat Apr 11 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35652 * 117.00137 * 2 1 4 4 C 1.38647 * 120.14082 * 0.02562 * 3 2 1 5 5 C 1.38204 * 120.07060 * 179.97438 * 4 3 2 6 6 Cl 1.73602 * 119.81895 * 180.02562 * 5 4 3 7 7 C 1.38702 * 120.36376 * 0.04249 * 5 4 3 8 8 C 1.37726 * 120.28465 * 359.69576 * 7 5 4 9 9 C 1.39745 * 119.92195 * 0.53897 * 8 7 5 10 10 C 1.47470 * 120.17808 * 179.76474 * 9 8 7 11 11 O 1.21595 * 120.00189 * 179.71827 * 10 9 8 12 12 N 1.34778 * 119.99984 * 359.72062 * 10 9 8 13 13 C 1.46505 * 120.00074 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.91310 * 37.44311 * 13 12 10 15 15 C 1.54914 * 111.00202 * 273.54598 * 13 12 10 16 16 N 1.47426 * 104.82992 * 204.91694 * 15 13 12 17 17 C 1.36936 * 125.64583 * 204.09666 * 16 15 13 18 18 H 1.08004 * 120.00261 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00145 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99550 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00112 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47257 * 90.00190 * 21 19 17 23 23 H 1.48507 * 109.47158 * 210.00140 * 21 19 17 24 24 H 1.48503 * 109.47321 * 329.99764 * 21 19 17 25 25 C 1.47018 * 108.70517 * 24.12623 * 16 15 13 26 26 C 1.54325 * 107.40412 * 358.86539 * 25 16 15 27 27 H 1.09002 * 110.72265 * 219.52294 * 26 25 16 28 28 O 1.42895 * 110.72044 * 96.24103 * 26 25 16 29 29 H 1.09002 * 109.47023 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47007 * 299.99413 * 1 2 3 31 31 H 1.08998 * 109.46943 * 59.99906 * 1 2 3 32 32 H 1.08004 * 119.96303 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.85780 * 179.97438 * 7 5 4 34 34 H 1.08000 * 120.03822 * 180.27192 * 8 7 5 35 35 H 0.96998 * 120.00184 * 359.97438 * 12 10 9 36 36 H 1.08999 * 110.37121 * 86.07429 * 15 13 12 37 37 H 1.09003 * 110.36718 * 323.75334 * 15 13 12 38 38 H 0.97004 * 119.99606 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.88241 * 118.36067 * 25 16 15 40 40 H 1.09000 * 109.88049 * 239.37196 * 25 16 15 41 41 H 0.96706 * 113.99347 * 61.46045 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2926 2.3733 0.0005 5 6 1.9216 3.6039 0.0011 6 17 0.9733 5.0581 0.0024 7 6 3.3063 3.6836 0.0002 8 6 4.0680 2.5361 0.0051 9 6 3.4445 1.2855 -0.0004 10 6 4.2546 0.0533 -0.0005 11 8 3.7087 -1.0333 -0.0001 12 7 5.6001 0.1314 -0.0009 13 6 6.4050 -1.0928 -0.0015 14 1 5.9430 -1.8618 -0.6206 15 6 6.6357 -1.6063 1.4418 16 7 7.8793 -2.3945 1.3675 17 6 8.2402 -3.3986 2.2259 18 1 7.5882 -3.6713 3.0426 19 6 9.4441 -4.0660 2.0464 20 7 10.2389 -3.7333 1.0515 21 14 9.9366 -5.4352 3.2178 22 1 9.4266 -6.7323 2.7055 23 1 11.4172 -5.4908 3.3195 24 1 9.3579 -5.1708 4.5596 25 6 8.6682 -1.9236 0.2198 26 6 7.8588 -0.8044 -0.4686 27 1 7.9403 -0.8807 -1.5529 28 8 8.2886 0.4813 -0.0170 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 0.2140 2.3188 0.0005 33 1 3.7893 4.6496 0.0002 34 1 5.1460 2.6028 0.0088 35 1 6.0357 0.9981 -0.0015 36 1 5.8049 -2.2373 1.7574 37 1 6.7583 -0.7680 2.1276 38 1 11.0803 -4.1994 0.9263 39 1 9.6252 -1.5311 0.5638 40 1 8.8336 -2.7444 -0.4781 41 1 9.2149 0.6778 -0.2135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083735466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:22 Heat of formation + Delta-G solvation = -62.842284 kcal Electronic energy + Delta-G solvation = -27136.229723 eV Core-core repulsion = 23043.752300 eV Total energy + Delta-G solvation = -4092.477424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79718 -39.23745 -37.97674 -37.68826 -36.59232 -34.82186 -33.93564 -31.97559 -31.10959 -30.57253 -28.47613 -27.61874 -26.92243 -24.70028 -23.75446 -22.56112 -20.89734 -20.44023 -19.83800 -18.75286 -17.59189 -16.98284 -16.93601 -16.48619 -16.06474 -15.58828 -15.21039 -15.04981 -14.75985 -14.52915 -14.12948 -14.00529 -13.82104 -13.58090 -13.12292 -12.86110 -12.67590 -12.55602 -12.29631 -12.20804 -12.03667 -11.66702 -11.36403 -11.27762 -11.13598 -10.94377 -10.81731 -10.50242 -10.37750 -10.11405 -9.80158 -9.63347 -9.32615 -9.30334 -8.71485 -8.64534 -8.49263 -6.85897 -5.73817 -3.06362 0.42053 0.96679 1.64529 2.75673 2.96886 3.30968 3.41359 3.46383 3.48384 3.65166 4.31015 4.46274 4.53869 4.60647 4.64368 4.80455 4.87946 4.90049 5.13373 5.16297 5.29821 5.31563 5.39275 5.53874 5.63987 5.73088 5.76285 5.83130 5.89391 6.11023 6.15917 6.24809 6.64330 6.71515 6.96529 7.04481 7.33664 7.45131 7.73813 7.85097 8.07608 8.21187 8.51873 9.19408 9.79481 10.44018 11.38603 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020546 B = 0.002492 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.441695 B =11234.431669 C =12044.043441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.271 6.271 3 C 0.197 3.803 4 C -0.216 4.216 5 C 0.026 3.974 6 Cl -0.064 7.064 7 C -0.158 4.158 8 C -0.033 4.033 9 C -0.160 4.160 10 C 0.554 3.446 11 O -0.518 6.518 12 N -0.706 5.706 13 C 0.142 3.858 14 H 0.103 0.897 15 C 0.131 3.869 16 N -0.601 5.601 17 C -0.222 4.222 18 H 0.080 0.920 19 C -0.010 4.010 20 N -0.927 5.927 21 Si 0.915 3.085 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.154 3.846 26 C 0.068 3.932 27 H 0.062 0.938 28 O -0.569 6.569 29 H 0.106 0.894 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.404 0.596 36 H 0.046 0.954 37 H 0.026 0.974 38 H 0.252 0.748 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.479 17.525 -5.850 24.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.181 6.181 3 C 0.148 3.852 4 C -0.235 4.235 5 C -0.001 4.001 6 Cl -0.035 7.035 7 C -0.177 4.177 8 C -0.052 4.052 9 C -0.164 4.164 10 C 0.340 3.660 11 O -0.394 6.394 12 N -0.358 5.358 13 C 0.036 3.964 14 H 0.121 0.879 15 C 0.004 3.996 16 N -0.328 5.328 17 C -0.351 4.351 18 H 0.097 0.903 19 C -0.206 4.206 20 N -0.576 5.576 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.028 3.972 26 C 0.008 3.992 27 H 0.080 0.920 28 O -0.376 6.376 29 H 0.124 0.876 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.240 0.760 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -17.308 16.516 -5.607 24.572 hybrid contribution 0.797 -0.017 0.406 0.895 sum -16.511 16.499 -5.201 23.914 Atomic orbital electron populations 1.23229 0.78530 1.04703 1.01229 1.86454 1.20897 1.24569 1.86224 1.18863 0.90833 0.84585 0.90942 1.21048 1.00956 0.90313 1.11213 1.20826 0.91949 0.87221 1.00087 1.98387 1.72417 1.36135 1.96560 1.20877 0.91237 0.99771 1.05808 1.21219 1.00466 0.90016 0.93521 1.19597 0.90877 0.94629 1.11340 1.17873 0.82261 0.88337 0.77545 1.90843 1.71529 1.28382 1.48665 1.45669 1.05112 1.10421 1.74615 1.22379 0.88277 0.86238 0.99473 0.87949 1.21840 0.90126 0.94551 0.93066 1.44283 1.17439 1.39290 1.31749 1.19100 1.02118 1.08001 1.05831 0.90265 1.24788 0.97043 1.00029 0.98740 1.69911 1.12300 1.43735 1.31626 0.86068 0.77439 0.81823 0.80156 1.21556 1.21698 1.20674 1.21871 0.93057 0.92791 0.89472 1.23554 0.94228 0.84709 0.96706 0.91993 1.86220 1.32358 1.34821 1.84158 0.87614 0.92439 0.92481 0.83802 0.84087 0.83604 0.75981 0.93616 0.95650 0.93750 0.92927 0.92609 0.77163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.27 -3.65 8.57 -40.54 -0.35 -4.00 16 3 C 0.20 2.47 6.70 -38.70 -0.26 2.21 16 4 C -0.22 -2.11 8.80 -39.44 -0.35 -2.46 16 5 C 0.03 0.24 6.32 -39.42 -0.25 -0.01 16 6 Cl -0.06 -0.52 28.94 -51.86 -1.50 -2.02 16 7 C -0.16 -1.39 9.80 -39.60 -0.39 -1.78 16 8 C -0.03 -0.33 9.53 -39.21 -0.37 -0.71 16 9 C -0.16 -2.12 5.89 -104.85 -0.62 -2.74 16 10 C 0.55 9.17 7.76 -12.50 -0.10 9.07 16 11 O -0.52 -10.51 14.90 -16.61 -0.25 -10.75 16 12 N -0.71 -11.08 5.13 -52.65 -0.27 -11.35 16 13 C 0.14 2.67 3.20 -65.64 -0.21 2.46 16 14 H 0.10 2.05 7.73 -51.93 -0.40 1.65 16 15 C 0.13 2.94 6.92 -2.53 -0.02 2.92 16 16 N -0.60 -15.55 3.39 -170.07 -0.58 -16.13 16 17 C -0.22 -6.30 10.28 -15.06 -0.15 -6.45 16 18 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 20 N -0.93 -26.85 10.31 55.49 0.57 -26.28 16 21 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.15 3.58 5.13 -3.07 -0.02 3.56 16 26 C 0.07 1.21 4.22 -24.76 -0.10 1.10 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 O -0.57 -8.79 12.15 -35.23 -0.43 -9.22 16 29 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 31 H 0.06 0.36 7.66 -51.93 -0.40 -0.03 16 32 H 0.14 1.09 6.30 -52.48 -0.33 0.76 16 33 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.15 1.19 6.40 -52.49 -0.34 0.85 16 35 H 0.40 5.41 5.59 -40.82 -0.23 5.18 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 40 H 0.06 1.43 7.37 -51.93 -0.38 1.05 16 41 H 0.38 4.58 9.09 45.56 0.41 5.00 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -34.20 356.12 -8.50 -42.70 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.11 Total: 6.48 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -1.94 Total: 7.93 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.28 Total: -53.76 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -1.02 Total: -23.98 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.20 -8.50 -42.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083735466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.139 kcal (2) G-P(sol) polarization free energy of solvation -34.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds