Wall clock time and date at job start Sat Apr 11 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35652 * 117.00137 * 2 1 4 4 C 1.38647 * 120.14082 * 0.02562 * 3 2 1 5 5 C 1.38204 * 120.07060 * 179.97438 * 4 3 2 6 6 Cl 1.73602 * 119.81895 * 180.02562 * 5 4 3 7 7 C 1.38702 * 120.36376 * 0.04249 * 5 4 3 8 8 C 1.37726 * 120.28465 * 359.69576 * 7 5 4 9 9 C 1.39745 * 119.92195 * 0.53897 * 8 7 5 10 10 C 1.47470 * 120.17808 * 179.76474 * 9 8 7 11 11 O 1.21595 * 120.00189 * 179.71827 * 10 9 8 12 12 N 1.34778 * 119.99984 * 359.72062 * 10 9 8 13 13 C 1.46505 * 120.00074 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.91310 * 37.44311 * 13 12 10 15 15 C 1.54914 * 111.00202 * 273.54598 * 13 12 10 16 16 N 1.47426 * 104.82992 * 204.91694 * 15 13 12 17 17 C 1.36936 * 125.64583 * 204.09666 * 16 15 13 18 18 H 1.08004 * 120.00261 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00145 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99550 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00112 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47257 * 90.00190 * 21 19 17 23 23 H 1.48507 * 109.47158 * 210.00140 * 21 19 17 24 24 H 1.48503 * 109.47321 * 329.99764 * 21 19 17 25 25 C 1.47018 * 108.70517 * 24.12623 * 16 15 13 26 26 C 1.54325 * 107.40412 * 358.86539 * 25 16 15 27 27 H 1.09002 * 110.72265 * 219.52294 * 26 25 16 28 28 O 1.42895 * 110.72044 * 96.24103 * 26 25 16 29 29 H 1.09002 * 109.47023 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47007 * 299.99413 * 1 2 3 31 31 H 1.08998 * 109.46943 * 59.99906 * 1 2 3 32 32 H 1.08004 * 119.96303 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.85780 * 179.97438 * 7 5 4 34 34 H 1.08000 * 120.03822 * 180.27192 * 8 7 5 35 35 H 0.96998 * 120.00184 * 359.97438 * 12 10 9 36 36 H 1.08999 * 110.37121 * 86.07429 * 15 13 12 37 37 H 1.09003 * 110.36718 * 323.75334 * 15 13 12 38 38 H 0.97004 * 119.99606 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.88241 * 118.36067 * 25 16 15 40 40 H 1.09000 * 109.88049 * 239.37196 * 25 16 15 41 41 H 0.96706 * 113.99347 * 61.46045 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2926 2.3733 0.0005 5 6 1.9216 3.6039 0.0011 6 17 0.9733 5.0581 0.0024 7 6 3.3063 3.6836 0.0002 8 6 4.0680 2.5361 0.0051 9 6 3.4445 1.2855 -0.0004 10 6 4.2546 0.0533 -0.0005 11 8 3.7087 -1.0333 -0.0001 12 7 5.6001 0.1314 -0.0009 13 6 6.4050 -1.0928 -0.0015 14 1 5.9430 -1.8618 -0.6206 15 6 6.6357 -1.6063 1.4418 16 7 7.8793 -2.3945 1.3675 17 6 8.2402 -3.3986 2.2259 18 1 7.5882 -3.6713 3.0426 19 6 9.4441 -4.0660 2.0464 20 7 10.2389 -3.7333 1.0515 21 14 9.9366 -5.4352 3.2178 22 1 9.4266 -6.7323 2.7055 23 1 11.4172 -5.4908 3.3195 24 1 9.3579 -5.1708 4.5596 25 6 8.6682 -1.9236 0.2198 26 6 7.8588 -0.8044 -0.4686 27 1 7.9403 -0.8807 -1.5529 28 8 8.2886 0.4813 -0.0170 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 0.2140 2.3188 0.0005 33 1 3.7893 4.6496 0.0002 34 1 5.1460 2.6028 0.0088 35 1 6.0357 0.9981 -0.0015 36 1 5.8049 -2.2373 1.7574 37 1 6.7583 -0.7680 2.1276 38 1 11.0803 -4.1994 0.9263 39 1 9.6252 -1.5311 0.5638 40 1 8.8336 -2.7444 -0.4781 41 1 9.2149 0.6778 -0.2135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083735466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:22 Heat of formation + Delta-G solvation = -87.615316 kcal Electronic energy + Delta-G solvation = -27137.303963 eV Core-core repulsion = 23043.752300 eV Total energy + Delta-G solvation = -4093.551663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.75139 -40.53933 -39.22249 -38.68894 -37.34186 -36.43837 -35.42553 -33.69316 -32.26758 -31.34561 -30.20200 -28.84041 -28.14164 -26.49927 -24.88849 -23.36075 -22.46307 -21.92734 -21.33400 -19.73738 -19.12400 -18.35301 -18.19307 -17.55656 -16.88133 -16.86969 -16.53751 -16.31172 -16.01931 -15.89734 -15.67343 -15.13696 -14.83026 -14.72186 -14.47233 -14.39316 -14.19479 -13.92640 -13.56253 -13.18088 -12.96179 -12.88805 -12.76645 -12.73177 -12.38827 -12.27134 -12.10909 -12.03088 -11.90010 -11.85523 -11.84565 -10.96260 -10.84981 -10.76759 -10.17265 -9.99411 -9.37663 -8.94603 -7.88838 -5.24403 -0.43284 0.20868 0.93354 1.45242 1.47265 1.55784 1.73168 2.03733 2.24571 2.48789 2.64753 3.17157 3.30080 3.56841 3.60327 3.73896 3.85472 3.90494 3.96256 3.98042 4.23635 4.27927 4.32562 4.34881 4.46863 4.51649 4.68521 4.70170 4.80994 4.85704 5.03029 5.05017 5.08638 5.35849 5.42672 5.45677 5.50495 5.65327 6.14773 6.26449 6.61840 6.89077 7.07006 7.27856 7.70690 8.34459 9.21103 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020546 B = 0.002492 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.441695 B =11234.431669 C =12044.043441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.309 6.309 3 C 0.183 3.817 4 C -0.211 4.211 5 C 0.028 3.972 6 Cl -0.049 7.049 7 C -0.152 4.152 8 C -0.025 4.025 9 C -0.189 4.189 10 C 0.552 3.448 11 O -0.564 6.564 12 N -0.693 5.693 13 C 0.154 3.846 14 H 0.088 0.912 15 C 0.133 3.867 16 N -0.621 5.621 17 C -0.247 4.247 18 H 0.075 0.925 19 C -0.060 4.060 20 N -0.947 5.947 21 Si 0.980 3.020 22 H -0.286 1.286 23 H -0.288 1.288 24 H -0.273 1.273 25 C 0.159 3.841 26 C 0.095 3.905 27 H 0.094 0.906 28 O -0.563 6.563 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.164 0.836 33 H 0.169 0.831 34 H 0.165 0.835 35 H 0.417 0.583 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.250 0.750 39 H 0.029 0.971 40 H 0.025 0.975 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.198 20.060 -6.106 27.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.220 6.220 3 C 0.134 3.866 4 C -0.231 4.231 5 C 0.001 3.999 6 Cl -0.020 7.020 7 C -0.170 4.170 8 C -0.043 4.043 9 C -0.193 4.193 10 C 0.341 3.659 11 O -0.444 6.444 12 N -0.346 5.346 13 C 0.047 3.953 14 H 0.106 0.894 15 C 0.006 3.994 16 N -0.348 5.348 17 C -0.375 4.375 18 H 0.093 0.907 19 C -0.253 4.253 20 N -0.596 5.596 21 Si 0.808 3.192 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.198 1.198 25 C 0.033 3.967 26 C 0.034 3.966 27 H 0.112 0.888 28 O -0.372 6.372 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.182 0.818 33 H 0.187 0.813 34 H 0.183 0.817 35 H 0.257 0.743 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.043 0.957 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -18.030 19.116 -5.869 26.925 hybrid contribution 0.931 -0.705 0.510 1.274 sum -17.099 18.411 -5.359 25.691 Atomic orbital electron populations 1.23494 0.76370 1.05713 1.02873 1.86401 1.23408 1.25727 1.86478 1.19074 0.90906 0.85168 0.91494 1.21192 1.01846 0.89584 1.10434 1.21015 0.92492 0.87574 0.98862 1.98400 1.72112 1.35104 1.96371 1.21180 0.91056 1.00443 1.04352 1.21397 1.01478 0.89060 0.92401 1.19481 0.91091 0.94084 1.14646 1.18432 0.82292 0.89048 0.76111 1.90813 1.72305 1.30459 1.50817 1.45467 1.04884 1.09862 1.74415 1.21964 0.89478 0.87275 0.96573 0.89364 1.21858 0.88233 0.93712 0.95556 1.44558 1.18909 1.39298 1.32057 1.19398 1.02501 1.09147 1.06492 0.90743 1.25599 0.97005 1.02276 1.00449 1.70104 1.12291 1.44465 1.32742 0.85066 0.76889 0.78817 0.78466 1.21263 1.21451 1.19793 1.21749 0.92989 0.93569 0.88356 1.23165 0.92061 0.83752 0.97586 0.88842 1.86182 1.34085 1.32732 1.84216 0.87109 0.90874 0.90620 0.81812 0.81322 0.81737 0.74344 0.95689 0.95763 0.94079 0.95270 0.95676 0.74965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.31 -8.43 8.57 -68.74 -0.59 -9.01 16 3 C 0.18 4.45 6.70 22.84 0.15 4.60 16 4 C -0.21 -3.70 8.80 22.36 0.20 -3.50 16 5 C 0.03 0.44 6.32 22.37 0.14 0.58 16 6 Cl -0.05 -0.65 28.94 -2.72 -0.08 -0.73 16 7 C -0.15 -2.17 9.80 22.26 0.22 -1.95 16 8 C -0.02 -0.44 9.53 22.51 0.21 -0.22 16 9 C -0.19 -4.85 5.89 -20.01 -0.12 -4.97 16 10 C 0.55 18.44 7.76 86.68 0.67 19.11 16 11 O -0.56 -23.81 14.90 16.92 0.25 -23.56 16 12 N -0.69 -21.30 5.13 -438.75 -2.25 -23.55 16 13 C 0.15 5.81 3.20 46.47 0.15 5.96 16 14 H 0.09 3.62 7.73 -2.39 -0.02 3.61 16 15 C 0.13 6.13 6.92 86.86 0.60 6.73 16 16 N -0.62 -33.15 3.39 -691.97 -2.35 -35.50 16 17 C -0.25 -14.37 10.28 84.03 0.86 -13.51 16 18 H 0.07 4.26 7.83 -2.91 -0.02 4.24 16 19 C -0.06 -3.45 5.49 84.86 0.47 -2.99 16 20 N -0.95 -56.01 10.31 21.65 0.22 -55.79 16 21 Si 0.98 46.44 29.55 68.60 2.03 48.47 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 C 0.16 7.55 5.13 86.73 0.44 8.00 16 26 C 0.09 3.27 4.22 31.87 0.13 3.41 16 27 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 28 O -0.56 -16.09 12.15 -148.98 -1.81 -17.90 16 29 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 31 H 0.08 0.86 7.66 -2.39 -0.02 0.84 16 32 H 0.16 2.07 6.30 -2.91 -0.02 2.05 16 33 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.17 2.16 6.40 -2.91 -0.02 2.14 16 35 H 0.42 10.35 5.59 -92.71 -0.52 9.83 16 36 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 39 H 0.03 1.51 7.42 -2.39 -0.02 1.49 16 40 H 0.03 1.33 7.37 -2.39 -0.02 1.32 16 41 H 0.40 8.55 9.09 -74.05 -0.67 7.88 16 Total: -1.00 -77.04 356.12 0.58 -76.46 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -0.09 Total: 18.61 kcal Atomic # 6 Polarization: 17.25 SS G_CDS: 5.25 Total: 22.50 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -4.38 Total: -114.85 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -2.15 Total: -50.48 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -77.04 0.58 -76.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083735466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.152 kcal (2) G-P(sol) polarization free energy of solvation -77.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds