Wall clock time and date at job start Sat Apr 11 2020 05:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35676 * 117.00099 * 2 1 4 4 C 1.38701 * 120.13855 * 0.02562 * 3 2 1 5 5 C 1.38045 * 120.09749 * 180.02562 * 4 3 2 6 6 C 1.38644 * 120.38351 * 359.95221 * 5 4 3 7 7 Cl 1.73596 * 119.86759 * 180.02562 * 6 5 4 8 8 C 1.37900 * 120.26959 * 359.76873 * 6 5 4 9 9 C 1.39716 * 119.89079 * 0.53231 * 8 6 5 10 10 C 1.47537 * 120.18153 * 179.72222 * 9 8 6 11 11 O 1.21593 * 119.99856 * 179.72575 * 10 9 8 12 12 N 1.34777 * 120.00133 * 359.45128 * 10 9 8 13 13 C 1.46504 * 119.99854 * 180.27865 * 12 10 9 14 14 H 1.09001 * 110.64035 * 34.29432 * 13 12 10 15 15 C 1.54326 * 110.71602 * 271.15271 * 13 12 10 16 16 N 1.47018 * 107.26935 * 219.44492 * 15 13 12 17 17 C 1.36934 * 125.65137 * 178.90934 * 16 15 13 18 18 H 1.08002 * 119.99789 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00633 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99583 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00280 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47070 * 89.99860 * 21 19 17 23 23 H 1.48497 * 109.46831 * 209.99888 * 21 19 17 24 24 H 1.48502 * 109.46845 * 329.99640 * 21 19 17 25 25 C 1.47425 * 108.70596 * 358.94129 * 16 15 13 26 26 C 1.55126 * 104.94260 * 24.00531 * 25 16 15 27 27 H 1.08996 * 111.16600 * 205.13305 * 26 25 16 28 28 O 1.42900 * 110.93589 * 81.21041 * 26 25 16 29 29 H 1.09007 * 109.46772 * 300.00692 * 1 2 3 30 30 H 1.08999 * 109.47179 * 59.99700 * 1 2 3 31 31 H 1.08998 * 109.47276 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.94974 * 359.97438 * 4 3 2 33 33 H 1.08006 * 119.81028 * 179.97438 * 5 4 3 34 34 H 1.08002 * 120.05252 * 180.25760 * 8 6 5 35 35 H 0.97000 * 119.99736 * 0.27139 * 12 10 9 36 36 H 1.09000 * 109.88300 * 338.85920 * 15 13 12 37 37 H 1.08995 * 109.88110 * 99.87265 * 15 13 12 38 38 H 0.96995 * 119.99976 * 180.02562 * 20 19 17 39 39 H 1.08997 * 110.36995 * 142.96273 * 25 16 15 40 40 H 1.09002 * 110.37014 * 265.18329 * 25 16 15 41 41 H 0.96702 * 113.99543 * 67.96525 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2924 2.3740 0.0005 5 6 1.9200 3.6035 0.0000 6 6 3.3041 3.6843 -0.0001 7 17 4.0794 5.2375 -0.0001 8 6 4.0674 2.5359 0.0052 9 6 3.4441 1.2855 -0.0006 10 6 4.2546 0.0527 -0.0012 11 8 3.7086 -1.0338 -0.0013 12 7 5.6001 0.1307 -0.0073 13 6 6.4048 -1.0935 -0.0141 14 1 5.9089 -1.8761 -0.5885 15 6 6.6871 -1.5692 1.4266 16 7 8.0739 -2.0561 1.4616 17 6 8.7204 -2.5455 2.5651 18 1 8.2064 -2.5967 3.5136 19 6 10.0366 -2.9749 2.4650 20 7 10.6632 -2.9120 1.3091 21 14 10.9186 -3.6419 3.9705 22 1 10.7076 -5.1091 4.0582 23 1 12.3717 -3.3564 3.8598 24 1 10.3776 -2.9901 5.1903 25 6 8.6536 -1.9294 0.1120 26 6 7.8236 -0.8146 -0.5769 27 1 7.8420 -0.9234 -1.6613 28 8 8.2842 0.4804 -0.1861 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 0.2138 2.3191 0.0005 33 1 1.3294 4.5078 0.0000 34 1 5.1453 2.6029 0.0093 35 1 6.0356 0.9975 -0.0074 36 1 6.5686 -0.7377 2.1214 37 1 6.0022 -2.3745 1.6920 38 1 11.5828 -3.2124 1.2390 39 1 9.7022 -1.6386 0.1753 40 1 8.5531 -2.8677 -0.4336 41 1 9.1670 0.6995 -0.5145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084024678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:35 Heat of formation + Delta-G solvation = -60.549061 kcal Electronic energy + Delta-G solvation = -27274.590889 eV Core-core repulsion = 23182.212907 eV Total energy + Delta-G solvation = -4092.377982 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.80331 -39.23506 -37.97537 -37.60921 -36.36830 -34.70469 -33.95179 -32.14840 -31.24775 -30.25081 -28.51465 -27.58696 -26.90688 -24.76902 -23.85839 -22.42430 -20.89008 -20.46599 -19.71818 -18.69450 -17.58086 -17.02451 -16.91465 -16.44591 -16.06055 -15.64899 -15.20350 -15.02725 -14.75142 -14.57532 -14.11085 -14.04506 -13.80700 -13.47416 -13.03703 -12.90136 -12.79960 -12.50481 -12.28071 -12.14662 -11.72280 -11.61142 -11.30614 -11.23207 -11.05089 -10.95297 -10.83318 -10.58458 -10.33361 -10.02092 -9.81189 -9.65500 -9.49533 -9.20643 -8.68844 -8.64352 -8.41170 -6.82010 -5.66936 -3.06468 0.51300 0.87017 1.86546 2.76542 2.96749 3.31594 3.41633 3.46570 3.48687 3.62911 4.29989 4.33290 4.50883 4.62687 4.67769 4.85780 4.87825 4.91111 5.10156 5.24200 5.31500 5.39069 5.41220 5.46362 5.52390 5.73688 5.77058 5.78927 5.95944 6.08967 6.11427 6.31235 6.58313 6.75060 6.98153 7.04822 7.28856 7.59107 7.74218 7.85017 8.14621 8.34017 8.50176 9.20895 9.81847 10.45404 11.38231 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014481 B = 0.002879 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.120991 B = 9723.988630 C =10773.239368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.274 6.274 3 C 0.189 3.811 4 C -0.210 4.210 5 C -0.046 4.046 6 C -0.083 4.083 7 Cl -0.066 7.066 8 C -0.036 4.036 9 C -0.153 4.153 10 C 0.555 3.445 11 O -0.520 6.520 12 N -0.705 5.705 13 C 0.144 3.856 14 H 0.102 0.898 15 C 0.131 3.869 16 N -0.596 5.596 17 C -0.215 4.215 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.927 5.927 21 Si 0.916 3.084 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.127 3.873 26 C 0.067 3.933 27 H 0.059 0.941 28 O -0.562 6.562 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.405 0.595 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.252 0.748 39 H 0.115 0.885 40 H 0.022 0.978 41 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.248 14.856 -7.041 24.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.184 6.184 3 C 0.140 3.860 4 C -0.229 4.229 5 C -0.065 4.065 6 C -0.110 4.110 7 Cl -0.037 7.037 8 C -0.055 4.055 9 C -0.157 4.157 10 C 0.342 3.658 11 O -0.396 6.396 12 N -0.357 5.357 13 C 0.039 3.961 14 H 0.119 0.881 15 C 0.004 3.996 16 N -0.323 5.323 17 C -0.343 4.343 18 H 0.096 0.904 19 C -0.208 4.208 20 N -0.577 5.577 21 Si 0.747 3.253 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.002 3.998 26 C 0.006 3.994 27 H 0.077 0.923 28 O -0.368 6.368 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.164 0.836 35 H 0.242 0.758 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.133 0.867 40 H 0.040 0.960 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -18.865 13.906 -6.671 24.367 hybrid contribution 1.003 0.323 0.512 1.171 sum -17.862 14.229 -6.159 23.653 Atomic orbital electron populations 1.23216 0.78570 1.04638 1.01177 1.86440 1.20856 1.24937 1.86141 1.19114 0.90974 0.85122 0.90780 1.21178 1.00633 0.91194 1.09914 1.20966 0.92358 0.98149 0.95049 1.20598 0.92877 0.86904 1.10644 1.98378 1.81106 1.27011 1.97235 1.21153 1.00634 0.89363 0.94383 1.19399 0.90974 0.93840 1.11537 1.17849 0.82307 0.88219 0.77468 1.90831 1.71564 1.28247 1.48979 1.45753 1.05069 1.10578 1.74338 1.22155 0.88989 0.86503 0.98417 0.88050 1.21593 0.87982 0.96691 0.93301 1.44278 1.07477 1.73969 1.06534 1.19106 0.94237 1.33124 0.87866 0.90419 1.24753 0.96842 1.01859 0.97327 1.69721 1.11729 1.53683 1.22530 0.86032 0.78826 0.78683 0.81749 1.21653 1.21685 1.20707 1.22631 0.99838 0.92915 0.84437 1.23633 0.93839 0.85480 0.96400 0.92275 1.86231 1.37568 1.33453 1.79511 0.92456 0.92499 0.87721 0.83898 0.84290 0.83594 0.75822 0.95273 0.95349 0.93764 0.86705 0.95997 0.77302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.27 -3.59 8.57 -40.62 -0.35 -3.94 16 3 C 0.19 2.32 6.70 -38.70 -0.26 2.06 16 4 C -0.21 -1.85 9.03 -39.48 -0.36 -2.21 16 5 C -0.05 -0.39 9.81 -39.50 -0.39 -0.78 16 6 C -0.08 -0.83 6.31 -39.56 -0.25 -1.08 16 7 Cl -0.07 -0.62 28.94 -51.86 -1.50 -2.12 16 8 C -0.04 -0.41 9.31 -39.15 -0.36 -0.77 16 9 C -0.15 -2.09 5.89 -104.85 -0.62 -2.70 16 10 C 0.56 9.37 7.76 -12.47 -0.10 9.28 16 11 O -0.52 -10.48 14.84 -16.60 -0.25 -10.73 16 12 N -0.70 -11.56 5.03 -53.06 -0.27 -11.83 16 13 C 0.14 2.75 3.15 -66.09 -0.21 2.54 16 14 H 0.10 1.97 7.62 -51.93 -0.40 1.58 16 15 C 0.13 2.99 7.00 -3.07 -0.02 2.97 16 16 N -0.60 -15.55 3.40 -169.94 -0.58 -16.13 16 17 C -0.21 -6.10 10.27 -15.06 -0.15 -6.26 16 18 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 19 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 20 N -0.93 -26.59 10.09 55.49 0.56 -26.03 16 21 Si 0.92 22.27 29.55 -169.99 -5.02 17.25 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.13 3.00 5.62 -2.41 -0.01 2.99 16 26 C 0.07 1.23 4.31 -24.46 -0.11 1.12 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 O -0.56 -9.52 12.23 -35.23 -0.43 -9.96 16 29 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 30 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.14 0.83 6.30 -52.49 -0.33 0.50 16 33 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.15 1.53 6.40 -52.49 -0.34 1.19 16 35 H 0.41 5.95 5.61 -40.82 -0.23 5.72 16 36 H 0.03 0.68 8.03 -51.93 -0.42 0.27 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.12 2.98 5.87 -51.93 -0.30 2.67 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.38 5.16 9.12 45.56 0.42 5.57 16 LS Contribution 355.47 15.07 5.36 5.36 Total: -1.00 -34.10 355.47 -8.47 -42.57 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.05 Total: 7.73 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -1.94 Total: 7.83 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.28 Total: -53.99 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -1.03 Total: -24.62 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.10 -8.47 -42.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084024678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.984 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds