Wall clock time and date at job start Sat Apr 11 2020 05:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35676 * 117.00099 * 2 1 4 4 C 1.38701 * 120.13855 * 0.02562 * 3 2 1 5 5 C 1.38045 * 120.09749 * 180.02562 * 4 3 2 6 6 C 1.38644 * 120.38351 * 359.95221 * 5 4 3 7 7 Cl 1.73596 * 119.86759 * 180.02562 * 6 5 4 8 8 C 1.37900 * 120.26959 * 359.76873 * 6 5 4 9 9 C 1.39716 * 119.89079 * 0.53231 * 8 6 5 10 10 C 1.47537 * 120.18153 * 179.72222 * 9 8 6 11 11 O 1.21593 * 119.99856 * 179.72575 * 10 9 8 12 12 N 1.34777 * 120.00133 * 359.45128 * 10 9 8 13 13 C 1.46504 * 119.99854 * 180.27865 * 12 10 9 14 14 H 1.09001 * 110.64035 * 34.29432 * 13 12 10 15 15 C 1.54326 * 110.71602 * 271.15271 * 13 12 10 16 16 N 1.47018 * 107.26935 * 219.44492 * 15 13 12 17 17 C 1.36934 * 125.65137 * 178.90934 * 16 15 13 18 18 H 1.08002 * 119.99789 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00633 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99583 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00280 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47070 * 89.99860 * 21 19 17 23 23 H 1.48497 * 109.46831 * 209.99888 * 21 19 17 24 24 H 1.48502 * 109.46845 * 329.99640 * 21 19 17 25 25 C 1.47425 * 108.70596 * 358.94129 * 16 15 13 26 26 C 1.55126 * 104.94260 * 24.00531 * 25 16 15 27 27 H 1.08996 * 111.16600 * 205.13305 * 26 25 16 28 28 O 1.42900 * 110.93589 * 81.21041 * 26 25 16 29 29 H 1.09007 * 109.46772 * 300.00692 * 1 2 3 30 30 H 1.08999 * 109.47179 * 59.99700 * 1 2 3 31 31 H 1.08998 * 109.47276 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.94974 * 359.97438 * 4 3 2 33 33 H 1.08006 * 119.81028 * 179.97438 * 5 4 3 34 34 H 1.08002 * 120.05252 * 180.25760 * 8 6 5 35 35 H 0.97000 * 119.99736 * 0.27139 * 12 10 9 36 36 H 1.09000 * 109.88300 * 338.85920 * 15 13 12 37 37 H 1.08995 * 109.88110 * 99.87265 * 15 13 12 38 38 H 0.96995 * 119.99976 * 180.02562 * 20 19 17 39 39 H 1.08997 * 110.36995 * 142.96273 * 25 16 15 40 40 H 1.09002 * 110.37014 * 265.18329 * 25 16 15 41 41 H 0.96702 * 113.99543 * 67.96525 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2924 2.3740 0.0005 5 6 1.9200 3.6035 0.0000 6 6 3.3041 3.6843 -0.0001 7 17 4.0794 5.2375 -0.0001 8 6 4.0674 2.5359 0.0052 9 6 3.4441 1.2855 -0.0006 10 6 4.2546 0.0527 -0.0012 11 8 3.7086 -1.0338 -0.0013 12 7 5.6001 0.1307 -0.0073 13 6 6.4048 -1.0935 -0.0141 14 1 5.9089 -1.8761 -0.5885 15 6 6.6871 -1.5692 1.4266 16 7 8.0739 -2.0561 1.4616 17 6 8.7204 -2.5455 2.5651 18 1 8.2064 -2.5967 3.5136 19 6 10.0366 -2.9749 2.4650 20 7 10.6632 -2.9120 1.3091 21 14 10.9186 -3.6419 3.9705 22 1 10.7076 -5.1091 4.0582 23 1 12.3717 -3.3564 3.8598 24 1 10.3776 -2.9901 5.1903 25 6 8.6536 -1.9294 0.1120 26 6 7.8236 -0.8146 -0.5769 27 1 7.8420 -0.9234 -1.6613 28 8 8.2842 0.4804 -0.1861 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 0.2138 2.3191 0.0005 33 1 1.3294 4.5078 0.0000 34 1 5.1453 2.6029 0.0093 35 1 6.0356 0.9975 -0.0074 36 1 6.5686 -0.7377 2.1214 37 1 6.0022 -2.3745 1.6920 38 1 11.5828 -3.2124 1.2390 39 1 9.7022 -1.6386 0.1753 40 1 8.5531 -2.8677 -0.4336 41 1 9.1670 0.6995 -0.5145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084024678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:34 Heat of formation + Delta-G solvation = -85.144337 kcal Electronic energy + Delta-G solvation = -27275.657420 eV Core-core repulsion = 23182.212907 eV Total energy + Delta-G solvation = -4093.444513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.76390 -40.53836 -39.20398 -38.69171 -37.14020 -36.37739 -35.46986 -33.74708 -32.51509 -31.02891 -30.27324 -28.80040 -28.10017 -26.53703 -25.03520 -23.24172 -22.46956 -21.93332 -21.27516 -19.71491 -19.09927 -18.36704 -18.20611 -17.55960 -16.90238 -16.84667 -16.57004 -16.47953 -16.04207 -15.85909 -15.62870 -15.23356 -14.83366 -14.66483 -14.44556 -14.36689 -14.21649 -13.55790 -13.53664 -13.22171 -13.03203 -12.93782 -12.80055 -12.74067 -12.30789 -12.24756 -12.13387 -11.98793 -11.89831 -11.84678 -11.66449 -11.00175 -10.85156 -10.71697 -10.34741 -10.07313 -9.23969 -8.90696 -7.80741 -5.24214 -0.33960 0.08991 1.11036 1.46307 1.48052 1.56796 1.73460 2.03057 2.26594 2.48869 2.61878 3.19309 3.30043 3.48923 3.61234 3.69385 3.83752 3.88680 3.94742 4.06364 4.27490 4.29291 4.32537 4.40588 4.47931 4.59422 4.62578 4.72358 4.75864 4.85327 4.93960 5.03170 5.05816 5.33726 5.37508 5.44685 5.47618 5.71327 6.25428 6.30057 6.56355 6.91299 7.08561 7.21805 7.72565 8.35773 9.21288 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014481 B = 0.002879 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.120991 B = 9723.988630 C =10773.239368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.312 6.312 3 C 0.177 3.823 4 C -0.198 4.198 5 C -0.031 4.031 6 C -0.089 4.089 7 Cl -0.060 7.060 8 C -0.036 4.036 9 C -0.184 4.184 10 C 0.554 3.446 11 O -0.561 6.561 12 N -0.697 5.697 13 C 0.155 3.845 14 H 0.097 0.903 15 C 0.133 3.867 16 N -0.615 5.615 17 C -0.243 4.243 18 H 0.072 0.928 19 C -0.059 4.059 20 N -0.944 5.944 21 Si 0.981 3.019 22 H -0.287 1.287 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.127 3.873 26 C 0.091 3.909 27 H 0.096 0.904 28 O -0.563 6.563 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.178 0.822 33 H 0.173 0.827 34 H 0.149 0.851 35 H 0.414 0.586 36 H 0.020 0.980 37 H 0.010 0.990 38 H 0.250 0.750 39 H 0.093 0.907 40 H 0.001 0.999 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.728 17.226 -7.361 27.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.223 6.223 3 C 0.128 3.872 4 C -0.216 4.216 5 C -0.049 4.049 6 C -0.116 4.116 7 Cl -0.031 7.031 8 C -0.056 4.056 9 C -0.188 4.188 10 C 0.343 3.657 11 O -0.441 6.441 12 N -0.349 5.349 13 C 0.049 3.951 14 H 0.115 0.885 15 C 0.006 3.994 16 N -0.341 5.341 17 C -0.372 4.372 18 H 0.090 0.910 19 C -0.252 4.252 20 N -0.594 5.594 21 Si 0.809 3.191 22 H -0.214 1.214 23 H -0.213 1.213 24 H -0.199 1.199 25 C 0.002 3.998 26 C 0.031 3.969 27 H 0.113 0.887 28 O -0.371 6.371 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.195 0.805 33 H 0.191 0.809 34 H 0.166 0.834 35 H 0.253 0.747 36 H 0.038 0.962 37 H 0.028 0.972 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.019 0.981 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -20.348 16.324 -7.006 27.011 hybrid contribution 1.382 -0.366 0.625 1.560 sum -18.966 15.958 -6.381 25.595 Atomic orbital electron populations 1.23521 0.76114 1.05698 1.03160 1.86388 1.23635 1.26024 1.86249 1.19382 0.90773 0.86099 0.90949 1.21511 1.02102 0.89858 1.08157 1.21390 0.91852 0.99275 0.92427 1.20711 0.93639 0.86658 1.10585 1.98384 1.81205 1.26321 1.97205 1.21136 1.00921 0.89160 0.94343 1.19197 0.91573 0.92880 1.15124 1.18399 0.82223 0.89030 0.76072 1.90797 1.72212 1.30116 1.50950 1.45603 1.05063 1.09960 1.74320 1.21823 0.90001 0.87586 0.95690 0.88541 1.21614 0.86320 0.95637 0.95822 1.44538 1.08736 1.73946 1.06930 1.19390 0.94994 1.34130 0.88664 0.90980 1.25555 0.97337 1.02124 1.00198 1.69941 1.11671 1.53779 1.23973 0.85039 0.77473 0.77835 0.78710 1.21436 1.21315 1.19905 1.22541 0.99561 0.93915 0.83799 1.23321 0.91814 0.84236 0.97573 0.88666 1.86201 1.38959 1.32081 1.79894 0.90546 0.90240 0.87389 0.80459 0.80923 0.83386 0.74697 0.96163 0.97233 0.94025 0.88960 0.98132 0.75301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.31 -8.06 8.57 -69.01 -0.59 -8.65 16 3 C 0.18 4.13 6.70 22.84 0.15 4.29 16 4 C -0.20 -2.83 9.03 22.33 0.20 -2.63 16 5 C -0.03 -0.40 9.81 22.32 0.22 -0.18 16 6 C -0.09 -1.56 6.31 22.29 0.14 -1.42 16 7 Cl -0.06 -0.98 28.94 -2.72 -0.08 -1.06 16 8 C -0.04 -0.78 9.31 22.55 0.21 -0.57 16 9 C -0.18 -4.94 5.89 -20.01 -0.12 -5.05 16 10 C 0.55 19.10 7.76 86.70 0.67 19.77 16 11 O -0.56 -23.54 14.84 16.92 0.25 -23.29 16 12 N -0.70 -23.00 5.03 -440.05 -2.21 -25.21 16 13 C 0.16 6.01 3.15 46.18 0.15 6.15 16 14 H 0.10 3.86 7.62 -2.39 -0.02 3.84 16 15 C 0.13 6.30 7.00 86.73 0.61 6.90 16 16 N -0.62 -33.15 3.40 -691.56 -2.35 -35.50 16 17 C -0.24 -14.19 10.27 84.03 0.86 -13.33 16 18 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 19 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 20 N -0.94 -55.10 10.09 21.65 0.22 -54.88 16 21 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 25 C 0.13 6.14 5.62 86.93 0.49 6.63 16 26 C 0.09 3.29 4.31 32.06 0.14 3.43 16 27 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 28 O -0.56 -18.39 12.23 -148.98 -1.82 -20.21 16 29 H 0.08 0.70 7.66 -2.38 -0.02 0.68 16 30 H 0.08 0.67 7.66 -2.39 -0.02 0.66 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.18 1.24 6.30 -2.91 -0.02 1.22 16 33 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.15 2.97 6.40 -2.91 -0.02 2.95 16 35 H 0.41 11.98 5.61 -92.71 -0.52 11.46 16 36 H 0.02 0.99 8.03 -2.39 -0.02 0.97 16 37 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 39 H 0.09 4.89 5.87 -2.39 -0.01 4.88 16 40 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.40 10.11 9.12 -74.06 -0.68 9.43 16 Total: -1.00 -76.70 355.47 0.65 -76.05 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -0.09 Total: 22.17 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 5.30 Total: 22.30 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -4.34 Total: -115.59 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -2.16 Total: -52.15 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -76.70 0.65 -76.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084024678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.093 kcal (2) G-P(sol) polarization free energy of solvation -76.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds