Wall clock time and date at job start Sat Apr 11 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 120.00059 * 2 1 4 4 C 1.52996 * 109.47185 * 270.00030 * 3 2 1 5 5 N 1.46498 * 109.47185 * 179.97438 * 4 3 2 6 6 C 1.34783 * 120.00176 * 180.02562 * 5 4 3 7 7 O 1.21276 * 119.99580 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99749 * 180.02562 * 6 5 4 9 9 S 1.81006 * 109.46875 * 179.97438 * 8 6 5 10 10 C 1.76192 * 99.99929 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00106 * 0.02562 * 10 9 8 12 12 C 1.38806 * 119.99917 * 180.02562 * 10 9 8 13 13 N 1.31635 * 119.99749 * 180.02562 * 12 10 9 14 14 Si 1.86793 * 119.99924 * 0.02562 * 12 10 9 15 15 H 1.48508 * 109.47011 * 90.00112 * 14 12 10 16 16 H 1.48498 * 109.47240 * 209.99957 * 14 12 10 17 17 H 1.48502 * 109.47272 * 330.00118 * 14 12 10 18 18 C 1.39003 * 119.99418 * 180.02562 * 2 1 3 19 19 C 1.39135 * 119.71168 * 4.97499 * 18 2 1 20 20 C 1.38292 * 119.09875 * 180.02562 * 19 18 2 21 21 C 1.38883 * 118.50826 * 359.97438 * 20 19 18 22 22 N 1.48006 * 120.34064 * 179.97438 * 21 20 19 23 23 O 1.21797 * 119.99603 * 0.02562 * 22 21 20 24 24 O 1.21800 * 120.00152 * 180.02562 * 22 21 20 25 25 C 1.38024 * 119.33008 * 0.03296 * 21 20 19 26 26 N 1.31979 * 120.85452 * 359.96730 * 25 21 20 27 27 H 1.09002 * 109.47257 * 269.99591 * 1 2 3 28 28 H 1.09005 * 109.47086 * 29.99830 * 1 2 3 29 29 H 1.09005 * 109.47381 * 149.99731 * 1 2 3 30 30 H 1.09000 * 109.47165 * 30.00055 * 3 2 1 31 31 H 1.09002 * 109.46977 * 150.00215 * 3 2 1 32 32 H 1.08999 * 109.47576 * 300.00666 * 4 3 2 33 33 H 1.09002 * 109.47012 * 60.00206 * 4 3 2 34 34 H 0.96999 * 119.99625 * 0.02562 * 5 4 3 35 35 H 1.08994 * 109.47715 * 299.99824 * 8 6 5 36 36 H 1.09002 * 109.47223 * 59.99970 * 8 6 5 37 37 H 0.96998 * 119.99701 * 180.02562 * 13 12 10 38 38 H 1.07998 * 120.44598 * 359.97438 * 19 18 2 39 39 H 1.07997 * 120.74950 * 180.02562 * 20 19 18 40 40 H 1.07993 * 119.57567 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1845 2.9794 -1.4425 6 6 3.5209 3.5634 -2.6097 7 8 3.2181 3.0380 -3.6599 8 6 4.2744 4.8685 -2.6096 9 16 4.5760 5.3911 -4.3161 10 6 5.4442 6.8966 -4.0261 11 1 5.6337 7.2244 -3.0147 12 6 5.8847 7.6612 -5.0976 13 7 6.5338 8.7856 -4.8809 14 14 5.5563 7.0944 -6.8469 15 1 4.2566 7.6441 -7.3095 16 1 6.6429 7.5779 -7.7361 17 1 5.5082 5.6107 -6.8858 18 6 2.1599 -1.2039 -0.0005 19 6 1.4620 -2.4029 -0.1059 20 6 2.1660 -3.5932 -0.1046 21 6 3.5499 -3.5447 0.0019 22 7 4.3436 -4.7940 0.0079 23 8 3.7833 -5.8717 -0.0812 24 8 5.5569 -4.7443 0.1020 25 6 4.1777 -2.3197 0.1032 26 7 3.4802 -1.1993 0.0994 27 1 -0.3634 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1383 0.5138 32 1 3.0415 0.9507 -1.9564 33 1 1.5001 1.8408 -1.9563 34 1 3.4270 3.3993 -0.6024 35 1 3.6856 5.6280 -2.0953 36 1 5.2270 4.7380 -2.0962 37 1 6.8413 9.3201 -5.6296 38 1 0.3851 -2.4040 -0.1867 39 1 1.6514 -4.5392 -0.1854 40 1 5.2536 -2.2774 0.1866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099937327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:09 Heat of formation + Delta-G solvation = 13.254680 kcal Electronic energy + Delta-G solvation = -25397.259862 eV Core-core repulsion = 21342.418708 eV Total energy + Delta-G solvation = -4054.841154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.46498 -41.11009 -39.43591 -37.75408 -36.79546 -34.84844 -33.59390 -32.47641 -31.98696 -30.57174 -28.85297 -27.77602 -25.72953 -25.48715 -24.59881 -23.28808 -21.90798 -20.66472 -19.75983 -19.02276 -18.30279 -17.93114 -17.78154 -17.28829 -16.55600 -16.41353 -15.89127 -15.54681 -15.35708 -15.05742 -14.96789 -14.43643 -14.10751 -13.98859 -13.82231 -13.77221 -13.40149 -12.89255 -12.83741 -12.60890 -12.34806 -11.82872 -11.67411 -11.55397 -11.38512 -11.31133 -11.23375 -11.04291 -10.75199 -10.65551 -10.41348 -9.90388 -9.67062 -9.15984 -9.03388 -8.65719 -8.55343 -6.96905 -6.32623 -4.04948 -0.48895 0.34499 1.00131 1.10319 1.88525 2.71486 2.86321 2.87139 3.24704 3.30122 3.47324 3.51965 3.65663 3.85112 3.89718 3.95797 4.29480 4.31705 4.38853 4.46191 4.64075 4.70582 4.75521 4.87954 4.93808 4.98494 5.03926 5.06394 5.20867 5.28555 5.43410 5.63368 5.69497 5.92047 5.94658 6.06552 6.28738 6.38732 7.07239 7.38723 7.44736 7.90383 8.36309 8.37830 9.13398 10.76519 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017022 B = 0.001916 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.541775 B =14612.893325 C =15551.114302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.586 5.586 3 C 0.108 3.892 4 C 0.109 3.891 5 N -0.735 5.735 6 C 0.533 3.467 7 O -0.518 6.518 8 C -0.124 4.124 9 S -0.142 6.142 10 C -0.522 4.522 11 H 0.089 0.911 12 C 0.095 3.905 13 N -0.879 5.879 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.442 3.558 19 C -0.237 4.237 20 C 0.029 3.971 21 C -0.168 4.168 22 N 0.046 4.954 23 O -0.174 6.174 24 O -0.168 6.168 25 C 0.238 3.762 26 N -0.526 5.526 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.401 0.599 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.271 0.729 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.382 -22.062 16.058 30.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.294 5.294 3 C -0.015 4.015 4 C -0.017 4.017 5 N -0.390 5.390 6 C 0.319 3.681 7 O -0.392 6.392 8 C -0.274 4.274 9 S 0.084 5.916 10 C -0.670 4.670 11 H 0.107 0.893 12 C -0.113 4.113 13 N -0.516 5.516 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C 0.205 3.795 19 C -0.262 4.262 20 C 0.003 3.997 21 C -0.258 4.258 22 N 0.562 4.438 23 O -0.386 6.386 24 O -0.381 6.381 25 C 0.074 3.926 26 N -0.244 5.244 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.235 0.765 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.174 0.826 39 H 0.180 0.820 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -14.933 -21.181 14.286 29.592 hybrid contribution 0.185 -0.200 0.745 0.793 sum -14.748 -21.381 15.031 30.009 Atomic orbital electron populations 1.22022 0.76915 1.04395 1.02723 1.46562 1.06018 1.02637 1.74155 1.21764 0.98891 0.83993 0.96867 1.21557 0.97246 0.86503 0.96412 1.45776 1.60187 1.23968 1.09115 1.20306 0.78697 0.85998 0.83138 1.90709 1.53088 1.64355 1.31034 1.23272 1.02724 0.96166 1.05269 1.84816 1.74605 1.29318 1.02826 1.22303 1.41402 1.05584 0.97666 0.89339 1.24720 0.93400 0.93893 0.99328 1.69938 1.36315 1.12857 1.32456 0.86733 0.78911 0.82086 0.84103 1.19218 1.19887 1.15946 1.18774 0.88581 0.86487 0.85617 1.21491 1.02242 0.90042 1.12414 1.21184 0.90733 1.00352 0.87394 1.21892 0.92972 0.85851 1.25065 1.43286 1.01181 1.02232 0.97119 1.94529 1.73621 1.16395 1.54098 1.94556 0.95804 1.94023 1.53753 1.22533 1.01390 0.84075 0.84557 1.67660 1.06108 1.28726 1.21878 0.91533 0.89635 0.90284 0.89280 0.88083 0.91322 0.91606 0.76511 0.88403 0.88294 0.91903 0.82601 0.82027 0.79795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.20 10.28 59.85 0.62 0.81 16 2 N -0.59 -3.21 2.99 -181.71 -0.54 -3.75 16 3 C 0.11 0.65 5.58 -4.05 -0.02 0.63 16 4 C 0.11 1.04 6.00 -4.05 -0.02 1.02 16 5 N -0.73 -8.21 5.56 -60.30 -0.33 -8.54 16 6 C 0.53 8.94 7.85 -10.98 -0.09 8.86 16 7 O -0.52 -10.87 15.86 5.56 0.09 -10.78 16 8 C -0.12 -2.28 6.16 36.00 0.22 -2.06 16 9 S -0.14 -3.53 18.55 -107.50 -1.99 -5.53 16 10 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 11 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 12 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 13 N -0.88 -26.26 13.97 55.49 0.78 -25.48 16 14 Si 0.86 21.59 27.74 -169.99 -4.71 16.88 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 18 C 0.44 3.08 7.37 -155.02 -1.14 1.94 16 19 C -0.24 -1.23 9.27 -39.23 -0.36 -1.59 16 20 C 0.03 0.18 9.66 -39.32 -0.38 -0.20 16 21 C -0.17 -1.43 6.87 -79.79 -0.55 -1.98 16 22 N 0.05 0.51 4.45 34.04 0.15 0.66 16 23 O -0.17 -2.01 18.52 -29.46 -0.55 -2.55 16 24 O -0.17 -1.99 18.46 -29.46 -0.54 -2.53 16 25 C 0.24 1.95 10.71 -17.57 -0.19 1.76 16 26 N -0.53 -4.47 9.08 -12.44 -0.11 -4.59 16 27 H 0.07 0.09 8.14 -51.93 -0.42 -0.34 16 28 H 0.08 0.18 8.07 -51.93 -0.42 -0.24 16 29 H 0.08 0.10 5.98 -51.93 -0.31 -0.21 16 30 H 0.09 0.35 8.07 -51.93 -0.42 -0.07 16 31 H 0.10 0.67 7.30 -51.93 -0.38 0.29 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.40 3.17 8.47 -40.82 -0.35 2.83 16 35 H 0.10 1.65 8.14 -51.92 -0.42 1.22 16 36 H 0.10 1.70 8.14 -51.91 -0.42 1.27 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.16 0.35 6.03 -52.49 -0.32 0.03 16 39 H 0.16 0.71 7.69 -52.49 -0.40 0.31 16 40 H 0.19 1.26 7.61 -52.49 -0.40 0.86 16 LS Contribution 367.69 15.07 5.54 5.54 Total: -1.00 -36.78 367.69 -8.62 -45.40 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -4.68 Total: -2.05 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -1.70 Total: -2.66 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: -0.06 Total: -41.71 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -1.00 Total: -15.87 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.78 -8.62 -45.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099937327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.654 kcal (2) G-P(sol) polarization free energy of solvation -36.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds