Wall clock time and date at job start Sat Apr 11 2020 05:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 120.00059 * 2 1 4 4 C 1.52996 * 109.47185 * 270.00030 * 3 2 1 5 5 N 1.46498 * 109.47185 * 179.97438 * 4 3 2 6 6 C 1.34783 * 120.00176 * 180.02562 * 5 4 3 7 7 O 1.21276 * 119.99580 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99749 * 180.02562 * 6 5 4 9 9 S 1.81006 * 109.46875 * 179.97438 * 8 6 5 10 10 C 1.76192 * 99.99929 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00106 * 0.02562 * 10 9 8 12 12 C 1.38806 * 119.99917 * 180.02562 * 10 9 8 13 13 N 1.31635 * 119.99749 * 180.02562 * 12 10 9 14 14 Si 1.86793 * 119.99924 * 0.02562 * 12 10 9 15 15 H 1.48508 * 109.47011 * 90.00112 * 14 12 10 16 16 H 1.48498 * 109.47240 * 209.99957 * 14 12 10 17 17 H 1.48502 * 109.47272 * 330.00118 * 14 12 10 18 18 C 1.39003 * 119.99418 * 180.02562 * 2 1 3 19 19 C 1.39135 * 119.71168 * 4.97499 * 18 2 1 20 20 C 1.38292 * 119.09875 * 180.02562 * 19 18 2 21 21 C 1.38883 * 118.50826 * 359.97438 * 20 19 18 22 22 N 1.48006 * 120.34064 * 179.97438 * 21 20 19 23 23 O 1.21797 * 119.99603 * 0.02562 * 22 21 20 24 24 O 1.21800 * 120.00152 * 180.02562 * 22 21 20 25 25 C 1.38024 * 119.33008 * 0.03296 * 21 20 19 26 26 N 1.31979 * 120.85452 * 359.96730 * 25 21 20 27 27 H 1.09002 * 109.47257 * 269.99591 * 1 2 3 28 28 H 1.09005 * 109.47086 * 29.99830 * 1 2 3 29 29 H 1.09005 * 109.47381 * 149.99731 * 1 2 3 30 30 H 1.09000 * 109.47165 * 30.00055 * 3 2 1 31 31 H 1.09002 * 109.46977 * 150.00215 * 3 2 1 32 32 H 1.08999 * 109.47576 * 300.00666 * 4 3 2 33 33 H 1.09002 * 109.47012 * 60.00206 * 4 3 2 34 34 H 0.96999 * 119.99625 * 0.02562 * 5 4 3 35 35 H 1.08994 * 109.47715 * 299.99824 * 8 6 5 36 36 H 1.09002 * 109.47223 * 59.99970 * 8 6 5 37 37 H 0.96998 * 119.99701 * 180.02562 * 13 12 10 38 38 H 1.07998 * 120.44598 * 359.97438 * 19 18 2 39 39 H 1.07997 * 120.74950 * 180.02562 * 20 19 18 40 40 H 1.07993 * 119.57567 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1845 2.9794 -1.4425 6 6 3.5209 3.5634 -2.6097 7 8 3.2181 3.0380 -3.6599 8 6 4.2744 4.8685 -2.6096 9 16 4.5760 5.3911 -4.3161 10 6 5.4442 6.8966 -4.0261 11 1 5.6337 7.2244 -3.0147 12 6 5.8847 7.6612 -5.0976 13 7 6.5338 8.7856 -4.8809 14 14 5.5563 7.0944 -6.8469 15 1 4.2566 7.6441 -7.3095 16 1 6.6429 7.5779 -7.7361 17 1 5.5082 5.6107 -6.8858 18 6 2.1599 -1.2039 -0.0005 19 6 1.4620 -2.4029 -0.1059 20 6 2.1660 -3.5932 -0.1046 21 6 3.5499 -3.5447 0.0019 22 7 4.3436 -4.7940 0.0079 23 8 3.7833 -5.8717 -0.0812 24 8 5.5569 -4.7443 0.1020 25 6 4.1777 -2.3197 0.1032 26 7 3.4802 -1.1993 0.0994 27 1 -0.3634 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1383 0.5138 32 1 3.0415 0.9507 -1.9564 33 1 1.5001 1.8408 -1.9563 34 1 3.4270 3.3993 -0.6024 35 1 3.6856 5.6280 -2.0953 36 1 5.2270 4.7380 -2.0962 37 1 6.8413 9.3201 -5.6296 38 1 0.3851 -2.4040 -0.1867 39 1 1.6514 -4.5392 -0.1854 40 1 5.2536 -2.2774 0.1866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099937327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:08 Heat of formation + Delta-G solvation = -11.922655 kcal Electronic energy + Delta-G solvation = -25398.351633 eV Core-core repulsion = 21342.418708 eV Total energy + Delta-G solvation = -4055.932925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.20771 -41.66934 -40.69137 -38.33055 -37.61366 -35.87403 -34.67860 -34.12042 -32.71132 -31.56225 -29.72311 -28.39247 -27.85930 -26.21399 -25.16305 -23.95035 -22.48842 -21.90305 -20.43039 -19.96077 -19.76452 -18.73638 -18.55562 -18.07077 -17.63919 -17.45963 -17.08807 -16.83906 -16.23243 -16.07028 -15.74967 -15.49301 -15.10471 -14.93045 -14.77483 -14.57566 -14.40220 -14.33467 -13.66100 -13.36089 -13.21694 -13.07215 -13.02333 -12.68403 -12.66475 -12.44756 -12.30489 -12.26405 -11.88941 -11.77010 -11.23717 -11.18075 -11.11531 -10.94364 -10.54733 -10.23575 -9.11576 -9.01028 -8.52466 -6.23308 -1.19458 -0.13564 0.29706 0.42364 0.96405 1.29993 1.37738 1.47939 1.51772 1.61154 2.22644 2.26964 2.35451 2.70827 2.85775 3.06428 3.30970 3.45706 3.49272 3.74398 3.87365 3.89629 4.14301 4.22875 4.29266 4.37060 4.46422 4.47182 4.51748 4.61407 4.67009 4.81050 4.88146 4.99670 5.26207 5.31772 5.54541 5.69962 5.86464 6.10906 6.40195 6.51626 6.57079 6.92835 7.14315 8.59730 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017022 B = 0.001916 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.541775 B =14612.893325 C =15551.114302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.581 5.581 3 C 0.117 3.883 4 C 0.113 3.887 5 N -0.708 5.708 6 C 0.537 3.463 7 O -0.565 6.565 8 C -0.111 4.111 9 S -0.180 6.180 10 C -0.527 4.527 11 H 0.064 0.936 12 C 0.045 3.955 13 N -0.916 5.916 14 Si 0.914 3.086 15 H -0.261 1.261 16 H -0.260 1.260 17 H -0.238 1.238 18 C 0.429 3.571 19 C -0.221 4.221 20 C 0.027 3.973 21 C -0.181 4.181 22 N 0.050 4.950 23 O -0.186 6.186 24 O -0.203 6.203 25 C 0.233 3.767 26 N -0.546 5.546 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.420 0.580 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.277 0.723 38 H 0.192 0.808 39 H 0.181 0.819 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.954 -22.604 17.018 32.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.288 5.288 3 C -0.007 4.007 4 C -0.013 4.013 5 N -0.362 5.362 6 C 0.322 3.678 7 O -0.443 6.443 8 C -0.261 4.261 9 S 0.047 5.953 10 C -0.675 4.675 11 H 0.082 0.918 12 C -0.161 4.161 13 N -0.554 5.554 14 Si 0.736 3.264 15 H -0.186 1.186 16 H -0.185 1.185 17 H -0.162 1.162 18 C 0.192 3.808 19 C -0.246 4.246 20 C 0.002 3.998 21 C -0.272 4.272 22 N 0.559 4.441 23 O -0.398 6.398 24 O -0.410 6.410 25 C 0.069 3.931 26 N -0.264 5.264 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.138 0.862 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.258 0.742 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.086 0.914 38 H 0.209 0.791 39 H 0.198 0.802 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -17.484 -21.731 15.317 31.820 hybrid contribution 0.846 0.014 0.608 1.042 sum -16.638 -21.718 15.925 31.656 Atomic orbital electron populations 1.22324 0.74722 1.05526 1.04247 1.46784 1.07225 1.01823 1.72995 1.21689 0.99716 0.85097 0.94212 1.21635 0.96183 0.84606 0.98837 1.45483 1.58523 1.23979 1.08262 1.19967 0.78494 0.85375 0.83952 1.90699 1.55252 1.65383 1.32975 1.23264 1.04369 0.97816 1.00690 1.84758 1.74140 1.27570 1.08871 1.22450 1.41387 1.07010 0.96658 0.91762 1.25566 0.93331 0.94052 1.03133 1.70015 1.37480 1.14007 1.33874 0.85871 0.79296 0.81434 0.79792 1.18605 1.18465 1.16221 1.19146 0.88393 0.87763 0.85472 1.21823 1.03738 0.88650 1.10355 1.21483 0.89703 1.01729 0.86903 1.22027 0.93766 0.84585 1.26828 1.43603 1.01141 1.02871 0.96479 1.94495 1.73477 1.17473 1.54315 1.94543 0.96733 1.94315 1.55388 1.22597 1.01738 0.84126 0.84603 1.67648 1.07271 1.28713 1.22806 0.89722 0.88987 0.88806 0.86154 0.88547 0.93965 0.91653 0.74191 0.86344 0.86754 0.91381 0.79109 0.80200 0.79637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.03 10.28 127.77 1.31 1.35 16 2 N -0.58 -4.39 2.99 -728.82 -2.18 -6.57 16 3 C 0.12 1.01 5.58 86.38 0.48 1.49 16 4 C 0.11 1.90 6.00 86.38 0.52 2.42 16 5 N -0.71 -13.98 5.56 -463.07 -2.57 -16.56 16 6 C 0.54 17.14 7.85 87.66 0.69 17.82 16 7 O -0.56 -23.32 15.86 -3.02 -0.05 -23.37 16 8 C -0.11 -3.91 6.16 71.24 0.44 -3.47 16 9 S -0.18 -8.90 18.55 -56.49 -1.05 -9.95 16 10 C -0.53 -30.18 10.04 67.96 0.68 -29.50 16 11 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16 12 C 0.04 2.59 5.50 84.86 0.47 3.06 16 13 N -0.92 -55.21 13.97 21.65 0.30 -54.90 16 14 Si 0.91 44.64 27.74 68.60 1.90 46.54 16 15 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 17 H -0.24 -11.66 6.74 99.48 0.67 -10.99 16 18 C 0.43 4.91 7.37 133.06 0.98 5.90 16 19 C -0.22 -1.60 9.27 22.50 0.21 -1.39 16 20 C 0.03 0.29 9.66 22.44 0.22 0.50 16 21 C -0.18 -3.02 6.87 36.48 0.25 -2.77 16 22 N 0.05 1.11 4.45 -46.22 -0.21 0.90 16 23 O -0.19 -4.33 18.52 18.89 0.35 -3.98 16 24 O -0.20 -5.10 18.46 18.89 0.35 -4.75 16 25 C 0.23 3.79 10.71 84.62 0.91 4.69 16 26 N -0.55 -8.65 9.08 -193.26 -1.75 -10.41 16 27 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.09 -0.01 8.07 -2.38 -0.02 -0.03 16 29 H 0.09 -0.21 5.98 -2.38 -0.01 -0.23 16 30 H 0.12 0.38 8.07 -2.39 -0.02 0.36 16 31 H 0.10 1.01 7.30 -2.39 -0.02 0.99 16 32 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 34 H 0.42 5.19 8.47 -92.71 -0.79 4.41 16 35 H 0.12 3.73 8.14 -2.40 -0.02 3.71 16 36 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 37 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.19 -0.06 6.03 -2.91 -0.02 -0.08 16 39 H 0.18 1.17 7.69 -2.91 -0.02 1.15 16 40 H 0.19 2.71 7.61 -2.91 -0.02 2.69 16 Total: -1.00 -82.32 367.69 2.52 -79.80 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 0.27 Total: 3.11 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 7.15 Total: 0.12 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -6.41 Total: -87.53 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: 0.65 Total: -32.09 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.54 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.05 Total: -9.95 kcal Total: -82.32 2.52 -79.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099937327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.873 kcal (2) G-P(sol) polarization free energy of solvation -82.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds