Wall clock time and date at job start Sat Apr 11 2020 05:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00471 * 2 1 4 4 C 1.52994 * 109.47283 * 89.99919 * 3 2 1 5 5 N 1.46498 * 109.47283 * 180.02562 * 4 3 2 6 6 C 1.39002 * 120.00104 * 180.02562 * 5 4 3 7 7 C 1.39143 * 119.70431 * 359.97438 * 6 5 4 8 8 C 1.38305 * 119.09428 * 179.97438 * 7 6 5 9 9 C 1.38883 * 118.50614 * 0.02562 * 8 7 6 10 10 N 1.48005 * 120.33340 * 179.97438 * 9 8 7 11 11 O 1.21802 * 120.00049 * 359.97438 * 10 9 8 12 12 O 1.21792 * 119.99969 * 180.02562 * 10 9 8 13 13 C 1.38017 * 119.32938 * 0.02562 * 9 8 7 14 14 N 1.31970 * 120.85887 * 359.97438 * 13 9 8 15 15 C 1.34780 * 119.99627 * 180.02562 * 2 1 3 16 16 O 1.21282 * 119.99810 * 180.02562 * 15 2 1 17 17 C 1.50705 * 120.00084 * 359.97438 * 15 2 1 18 18 S 1.81001 * 109.47058 * 180.02562 * 17 15 2 19 19 C 1.76199 * 99.99852 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00182 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00017 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99779 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99855 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47385 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47189 * 120.00490 * 23 21 19 26 26 H 1.48501 * 109.47069 * 239.99863 * 23 21 19 27 27 H 1.09004 * 109.47085 * 89.99687 * 1 2 3 28 28 H 1.09000 * 109.47667 * 210.00415 * 1 2 3 29 29 H 1.09001 * 109.46861 * 330.00009 * 1 2 3 30 30 H 1.09008 * 109.46683 * 329.99977 * 3 2 1 31 31 H 1.08995 * 109.47149 * 209.99999 * 3 2 1 32 32 H 1.08999 * 109.47362 * 60.00099 * 4 3 2 33 33 H 1.09008 * 109.46944 * 300.00318 * 4 3 2 34 34 H 0.96993 * 119.99726 * 359.97438 * 5 4 3 35 35 H 1.07994 * 120.45260 * 0.25357 * 7 6 5 36 36 H 1.08001 * 120.74349 * 180.02562 * 8 7 6 37 37 H 1.08004 * 119.57177 * 179.97438 * 13 9 8 38 38 H 1.08993 * 109.47015 * 300.00223 * 17 15 2 39 39 H 1.09001 * 109.46747 * 60.00239 * 17 15 2 40 40 H 0.97001 * 119.99812 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4424 5 7 3.1847 2.9793 1.4424 6 6 3.5326 3.5810 2.6462 7 6 3.1820 2.9729 3.8476 8 6 3.5350 3.5823 5.0380 9 6 4.2290 4.7843 4.9869 10 7 4.6263 5.4715 6.2361 11 8 4.3445 4.9835 7.3159 12 8 5.2343 6.5256 6.1842 13 6 4.5434 5.3318 3.7597 14 7 4.1937 4.7281 2.6395 15 6 2.1388 -1.1673 -0.0005 16 8 3.3516 -1.1673 -0.0001 17 6 1.3852 -2.4724 -0.0005 18 16 2.5614 -3.8482 -0.0005 19 6 1.4412 -5.2083 -0.0013 20 1 0.3759 -5.0305 -0.0020 21 6 1.9279 -6.5081 -0.0020 22 7 3.2262 -6.7248 -0.0017 23 14 0.7403 -7.9500 -0.0036 24 1 -0.6550 -7.4420 -0.0044 25 1 0.9665 -8.7763 -1.2166 26 1 0.9655 -8.7780 1.2084 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6085 2.0283 -0.5139 31 1 3.1500 1.1383 -0.5138 32 1 3.0417 0.9507 1.9563 33 1 1.5001 1.8407 1.9563 34 1 3.4272 3.3992 0.6024 35 1 2.6456 2.0356 3.8506 36 1 3.2768 3.1336 5.9858 37 1 5.0826 6.2666 3.7154 38 1 0.7589 -2.5302 0.8896 39 1 0.7583 -2.5298 -0.8903 40 1 3.5663 -7.6332 -0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101514888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:18 Heat of formation + Delta-G solvation = 9.825502 kcal Electronic energy + Delta-G solvation = -25304.895564 eV Core-core repulsion = 21249.905710 eV Total energy + Delta-G solvation = -4054.989854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.40774 -40.92651 -39.79833 -37.13644 -36.74855 -35.43224 -33.49989 -32.52621 -31.97636 -30.32191 -28.52378 -26.93983 -25.98296 -25.55298 -24.80108 -23.40463 -22.44225 -19.73916 -19.57281 -19.01254 -18.30174 -17.82928 -17.73652 -17.40999 -16.86630 -16.21228 -15.83668 -15.57192 -15.24277 -14.89415 -14.87730 -14.41389 -14.18876 -13.99616 -13.72420 -13.44476 -13.18968 -12.71999 -12.65915 -12.61445 -12.09289 -12.02267 -11.78500 -11.51968 -11.34552 -11.18001 -11.14683 -11.12260 -10.84401 -10.64443 -10.41774 -9.90551 -9.65370 -9.16828 -8.92304 -8.72153 -8.35542 -6.62390 -6.31451 -4.03323 -0.41279 0.43256 1.07429 1.16454 2.10072 2.76083 2.84927 2.96151 3.14686 3.18345 3.24032 3.45050 3.74622 3.92937 4.02996 4.10283 4.11012 4.33892 4.38495 4.79641 4.85330 4.85464 4.89253 5.00526 5.04143 5.08414 5.17650 5.29904 5.37982 5.44597 5.48945 5.54956 5.72827 5.97026 6.01570 6.12697 6.29554 6.66529 7.18940 7.19689 7.43821 7.50331 8.25313 8.27141 9.14199 10.75987 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018263 B = 0.001819 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.775320 B =15387.499689 C =16209.168678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.623 5.623 3 C 0.109 3.891 4 C 0.099 3.901 5 N -0.694 5.694 6 C 0.447 3.553 7 C -0.233 4.233 8 C 0.030 3.970 9 C -0.169 4.169 10 N 0.048 4.952 11 O -0.173 6.173 12 O -0.172 6.172 13 C 0.235 3.765 14 N -0.533 5.533 15 C 0.533 3.467 16 O -0.510 6.510 17 C -0.151 4.151 18 S -0.062 6.062 19 C -0.536 4.536 20 H 0.074 0.926 21 C 0.074 3.926 22 N -0.866 5.866 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.279 1.279 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.414 0.586 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.184 0.816 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 22.695 3.812 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.360 5.360 3 C -0.015 4.015 4 C -0.026 4.026 5 N -0.322 5.322 6 C 0.208 3.792 7 C -0.259 4.259 8 C 0.004 3.996 9 C -0.260 4.260 10 N 0.563 4.437 11 O -0.386 6.386 12 O -0.385 6.385 13 C 0.072 3.928 14 N -0.251 5.251 15 C 0.321 3.679 16 O -0.383 6.383 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.251 0.749 35 H 0.173 0.827 36 H 0.180 0.820 37 H 0.201 0.799 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.720 22.327 2.374 22.759 hybrid contribution -2.273 -1.012 0.762 2.602 sum -5.992 21.315 3.136 22.362 Atomic orbital electron populations 1.21843 0.79003 1.03382 1.02246 1.47768 1.07053 1.04936 1.76250 1.21363 0.99445 0.86216 0.94524 1.22116 0.96521 0.83977 1.00014 1.44662 1.58507 1.23598 1.05457 1.18724 0.85982 0.87517 0.86986 1.21521 1.09777 1.04550 0.90053 1.21218 0.88031 0.89788 1.00539 1.21862 1.17377 1.01049 0.85714 1.43285 0.98052 1.00108 1.02296 1.94543 1.59102 1.68771 1.16145 1.94529 1.39601 1.10255 1.94097 1.22446 0.88998 0.97239 0.84126 1.67618 1.18285 1.10247 1.28999 1.20492 0.87991 0.84589 0.74803 1.90721 1.13700 1.86681 1.47191 1.23564 1.04668 0.96974 1.04921 1.85431 1.07923 0.93398 1.96737 1.22879 0.94281 0.92101 1.59185 0.90821 1.25003 0.95711 0.98445 0.94427 1.70019 1.11757 1.21698 1.46682 0.86104 0.80279 0.81059 0.77985 1.19596 1.20519 1.20505 0.92306 0.90235 0.91300 0.89800 0.88753 0.89979 0.90740 0.74928 0.82675 0.81953 0.79924 0.89059 0.89057 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 10.24 59.85 0.61 1.19 16 2 N -0.62 -6.64 2.87 -181.57 -0.52 -7.16 16 3 C 0.11 0.87 5.52 -4.05 -0.02 0.85 16 4 C 0.10 0.70 5.21 -4.05 -0.02 0.68 16 5 N -0.69 -4.72 5.73 -60.42 -0.35 -5.07 16 6 C 0.45 3.66 7.65 -155.02 -1.19 2.47 16 7 C -0.23 -1.73 9.33 -39.22 -0.37 -2.10 16 8 C 0.03 0.24 9.66 -39.32 -0.38 -0.14 16 9 C -0.17 -1.57 6.87 -79.80 -0.55 -2.12 16 10 N 0.05 0.54 4.45 34.04 0.15 0.69 16 11 O -0.17 -2.12 18.52 -29.46 -0.55 -2.67 16 12 O -0.17 -2.03 18.46 -29.46 -0.54 -2.58 16 13 C 0.24 1.96 10.71 -17.57 -0.19 1.77 16 14 N -0.53 -4.70 10.39 -12.44 -0.13 -4.83 16 15 C 0.53 8.65 7.69 -10.98 -0.08 8.57 16 16 O -0.51 -10.26 15.44 5.56 0.09 -10.17 16 17 C -0.15 -2.74 4.71 36.01 0.17 -2.57 16 18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 19 C -0.54 -14.59 9.50 30.94 0.29 -14.30 16 20 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 21 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 22 N -0.87 -25.34 13.22 55.49 0.73 -24.61 16 23 Si 0.92 20.65 29.55 -169.99 -5.02 15.63 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.62 6.44 -51.93 -0.33 0.28 16 29 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 30 H 0.08 0.43 8.07 -51.92 -0.42 0.02 16 31 H 0.09 0.93 7.42 -51.93 -0.39 0.55 16 32 H 0.08 0.77 7.92 -51.93 -0.41 0.36 16 33 H 0.07 0.42 7.93 -51.92 -0.41 0.01 16 34 H 0.41 2.36 8.60 -40.82 -0.35 2.01 16 35 H 0.16 0.93 6.71 -52.49 -0.35 0.57 16 36 H 0.16 1.03 7.69 -52.49 -0.40 0.62 16 37 H 0.18 1.15 7.61 -52.48 -0.40 0.75 16 38 H 0.09 1.50 7.40 -51.92 -0.38 1.12 16 39 H 0.09 1.54 8.11 -51.92 -0.42 1.12 16 40 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -34.86 369.36 -9.26 -44.12 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.66 Total: -1.35 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -1.82 Total: -3.77 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: -0.11 Total: -40.98 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -1.00 Total: -15.42 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.86 -9.26 -44.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101514888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.942 kcal (2) G-P(sol) polarization free energy of solvation -34.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds