Wall clock time and date at job start Sat Apr 11 2020 05:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35922 * 116.99754 * 2 1 4 4 C 1.38859 * 120.05892 * 269.97808 * 3 2 1 5 5 Cl 1.73600 * 120.03779 * 0.04193 * 4 3 2 6 6 C 1.38218 * 119.92481 * 180.02562 * 4 3 2 7 7 C 1.38283 * 120.04098 * 0.02562 * 6 4 3 8 8 C 1.38235 * 120.12142 * 359.67942 * 7 6 4 9 9 C 1.38199 * 120.07237 * 0.59946 * 8 7 6 10 10 C 1.50697 * 120.01753 * 179.69780 * 9 8 7 11 11 N 1.46499 * 109.47276 * 259.72490 * 10 9 8 12 12 C 1.34784 * 119.99971 * 180.02562 * 11 10 9 13 13 O 1.21341 * 119.99750 * 359.72803 * 12 11 10 14 14 C 1.49449 * 119.99546 * 179.97438 * 12 11 10 15 15 O 1.21346 * 120.00675 * 0.02562 * 14 12 11 16 16 N 1.34784 * 119.99546 * 179.97438 * 14 12 11 17 17 C 1.46499 * 119.99971 * 180.02562 * 16 14 12 18 18 C 1.52992 * 109.47267 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47257 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99988 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00042 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00041 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00267 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.46757 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47214 * 119.99643 * 23 21 19 26 26 H 1.48501 * 109.47344 * 240.00176 * 23 21 19 27 27 H 1.08997 * 109.46953 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46902 * 300.00028 * 1 2 3 29 29 H 1.08996 * 109.47128 * 60.00061 * 1 2 3 30 30 H 1.07999 * 119.97604 * 179.97438 * 6 4 3 31 31 H 1.08001 * 119.93944 * 179.97438 * 7 6 4 32 32 H 1.08004 * 119.96574 * 180.31906 * 8 7 6 33 33 H 1.09004 * 109.47205 * 139.72465 * 10 9 8 34 34 H 1.09005 * 109.47240 * 19.72674 * 10 9 8 35 35 H 0.96999 * 119.99984 * 0.02562 * 11 10 9 36 36 H 0.96999 * 120.00044 * 0.02562 * 16 14 12 37 37 H 1.09005 * 109.47136 * 300.00073 * 17 16 14 38 38 H 1.09004 * 109.47024 * 59.99690 * 17 16 14 39 39 H 1.08997 * 109.47279 * 300.00390 * 18 17 16 40 40 H 1.09004 * 109.47330 * 59.99904 * 18 17 16 41 41 H 0.97000 * 120.00297 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 2.3622 1.8306 -1.2018 5 17 1.9689 1.0597 -2.7067 6 6 2.9901 3.0619 -1.1986 7 6 3.3037 3.6760 0.0001 8 6 2.9843 3.0637 1.1976 9 6 2.3616 1.8299 1.2001 10 6 2.0202 1.1604 2.5063 11 7 3.0268 0.1404 2.8100 12 6 2.9255 -0.5919 3.9371 13 8 2.0031 -0.4028 4.7025 14 6 3.9522 -1.6328 4.2466 15 8 4.8773 -1.8185 3.4835 16 7 3.8511 -2.3647 5.3739 17 6 4.8578 -3.3848 5.6776 18 6 4.5115 -4.0640 7.0040 19 6 5.5467 -5.1138 7.3162 20 1 6.3691 -5.2801 6.6363 21 6 5.4433 -5.8626 8.4693 22 7 4.4415 -5.6604 9.2970 23 14 6.7268 -7.1633 8.8566 24 1 7.7434 -7.1932 7.7744 25 1 7.3863 -6.8391 10.1471 26 1 6.0709 -8.4919 8.9559 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.2368 3.5443 -2.1329 31 1 3.7947 4.6379 0.0007 32 1 3.2257 3.5479 2.1323 33 1 1.0394 0.6912 2.4286 34 1 2.0049 1.9044 3.3028 35 1 3.7663 -0.0080 2.2001 36 1 3.1119 -2.2161 5.9840 37 1 4.8731 -4.1288 4.8811 38 1 5.8386 -2.9155 5.7553 39 1 4.4965 -3.3199 7.8003 40 1 3.5306 -4.5332 6.9268 41 1 4.3689 -6.1869 10.1084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119939347.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:19 Heat of formation + Delta-G solvation = -117.534496 kcal Electronic energy + Delta-G solvation = -25903.557863 eV Core-core repulsion = 21808.708807 eV Total energy + Delta-G solvation = -4094.849056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.83022 -41.17408 -39.59298 -38.42464 -37.59283 -36.94090 -36.04195 -34.80955 -32.49672 -31.68790 -31.25096 -28.58079 -27.70881 -26.86541 -24.77044 -23.59078 -22.88385 -22.56917 -21.49543 -19.81095 -18.85826 -18.58366 -17.87641 -17.77494 -17.21690 -17.06708 -16.72310 -16.52219 -16.42280 -15.97977 -15.84177 -15.53012 -14.97466 -14.90065 -14.72947 -14.31687 -14.29345 -14.08103 -13.80104 -13.25180 -13.21205 -12.96117 -12.88167 -12.72003 -12.61074 -12.51157 -12.38778 -12.29287 -11.95484 -11.68756 -11.41866 -11.06775 -10.77489 -10.62050 -10.39043 -10.19700 -9.93833 -9.68962 -8.23401 -6.34387 -0.09905 -0.02319 0.31865 1.06833 1.36219 1.42529 1.44196 1.56847 2.11967 2.28367 2.40875 2.64853 2.85196 3.11527 3.34735 3.45481 3.78513 4.08666 4.15611 4.23924 4.28255 4.34721 4.39313 4.40771 4.45319 4.54147 4.66294 4.78629 4.81461 5.03709 5.05511 5.08409 5.21296 5.31237 5.42780 5.55294 5.57628 5.75711 5.90485 6.13303 6.31641 6.33753 6.68119 6.79711 6.92301 7.35084 8.88809 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.022314 B = 0.001867 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.491929 B =14993.633271 C =15209.246385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.346 6.346 3 C 0.108 3.892 4 C -0.077 4.077 5 Cl -0.064 7.064 6 C -0.088 4.088 7 C -0.106 4.106 8 C -0.076 4.076 9 C -0.129 4.129 10 C 0.167 3.833 11 N -0.680 5.680 12 C 0.518 3.482 13 O -0.539 6.539 14 C 0.500 3.500 15 O -0.550 6.550 16 N -0.688 5.688 17 C 0.138 3.862 18 C 0.018 3.982 19 C -0.543 4.543 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.928 5.928 23 Si 0.968 3.032 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.278 1.278 27 H 0.105 0.895 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.158 0.842 31 H 0.171 0.829 32 H 0.160 0.840 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.417 0.583 36 H 0.415 0.585 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.009 0.991 40 H 0.008 0.992 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.435 23.178 -23.085 33.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.263 6.263 3 C 0.063 3.937 4 C -0.104 4.104 5 Cl -0.035 7.035 6 C -0.106 4.106 7 C -0.124 4.124 8 C -0.094 4.094 9 C -0.130 4.130 10 C 0.045 3.955 11 N -0.333 5.333 12 C 0.298 3.702 13 O -0.416 6.416 14 C 0.280 3.720 15 O -0.429 6.429 16 N -0.339 5.339 17 C 0.015 3.985 18 C -0.019 4.019 19 C -0.582 4.582 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.567 5.567 23 Si 0.792 3.208 24 H -0.187 1.187 25 H -0.203 1.203 26 H -0.204 1.204 27 H 0.123 0.877 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.176 0.824 31 H 0.188 0.812 32 H 0.177 0.823 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.253 0.747 36 H 0.251 0.749 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.027 0.973 40 H 0.026 0.974 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.487 22.865 -23.054 33.322 hybrid contribution 0.128 -0.972 0.246 1.011 sum -7.359 21.893 -22.808 32.460 Atomic orbital electron populations 1.23180 0.77074 1.04615 1.01382 1.86071 1.21503 1.24389 1.94317 1.18517 0.97639 0.86477 0.91031 1.21575 1.05945 0.96237 0.86643 1.98378 1.92844 1.81441 1.30887 1.21425 0.96041 0.92014 1.01161 1.21552 0.98991 1.01520 0.90367 1.21495 0.94518 0.92759 1.00648 1.20075 1.03797 0.96500 0.92669 1.20259 0.91460 0.89904 0.93866 1.45725 1.29272 1.36236 1.22063 1.19883 0.85401 0.82327 0.82561 1.90753 1.33996 1.68196 1.48684 1.20344 0.86244 0.83047 0.82325 1.90725 1.34552 1.68895 1.48688 1.46055 1.29279 1.36194 1.22366 1.21478 0.90231 0.88583 0.98206 1.19180 0.96677 0.94931 0.91114 1.21475 1.10538 1.19407 1.06755 0.91766 1.25922 0.97936 0.99660 0.95958 1.70081 1.32141 1.41936 1.12578 0.85350 0.78815 0.78289 0.78297 1.18664 1.20318 1.20401 0.87676 0.92549 0.92628 0.82401 0.81158 0.82260 0.90449 0.88267 0.74663 0.74868 0.92187 0.91983 0.97270 0.97408 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.85 113.37 1.23 1.68 16 2 O -0.35 -6.95 9.20 -92.68 -0.85 -7.80 16 3 C 0.11 1.89 5.69 22.52 0.13 2.02 16 4 C -0.08 -1.19 6.33 22.41 0.14 -1.05 16 5 Cl -0.06 -1.07 28.51 -2.72 -0.08 -1.15 16 6 C -0.09 -0.89 9.83 22.28 0.22 -0.67 16 7 C -0.11 -0.77 10.04 22.28 0.22 -0.54 16 8 C -0.08 -0.72 9.66 22.26 0.22 -0.51 16 9 C -0.13 -1.90 5.26 -19.77 -0.10 -2.00 16 10 C 0.17 2.91 5.46 85.63 0.47 3.38 16 11 N -0.68 -15.57 5.54 -468.14 -2.59 -18.17 16 12 C 0.52 15.25 7.89 87.27 0.69 15.94 16 13 O -0.54 -17.58 16.48 -3.22 -0.05 -17.63 16 14 C 0.50 17.35 7.89 87.27 0.69 18.03 16 15 O -0.55 -21.10 16.48 -3.23 -0.05 -21.15 16 16 N -0.69 -25.42 5.55 -464.41 -2.58 -28.00 16 17 C 0.14 5.85 5.61 86.38 0.48 6.34 16 18 C 0.02 0.94 5.09 29.85 0.15 1.09 16 19 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 20 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 21 C 0.00 0.22 5.46 84.65 0.46 0.68 16 22 N -0.93 -54.91 13.29 21.45 0.28 -54.63 16 23 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 24 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 27 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 0.72 7.12 -2.39 -0.02 0.70 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 31 H 0.17 0.16 8.06 -2.91 -0.02 0.14 16 32 H 0.16 0.83 8.03 -2.91 -0.02 0.81 16 33 H 0.08 1.44 6.56 -2.38 -0.02 1.43 16 34 H 0.10 1.48 8.00 -2.38 -0.02 1.46 16 35 H 0.42 9.45 7.94 -92.71 -0.74 8.71 16 36 H 0.41 14.67 7.94 -92.71 -0.74 13.93 16 37 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 38 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 39 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 41 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -69.50 376.69 0.95 -68.55 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -0.38 Total: 19.90 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 5.23 Total: 14.46 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -4.89 Total: -100.80 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -0.96 Total: -46.59 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -69.50 0.95 -68.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119939347.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.980 kcal (2) G-P(sol) polarization free energy of solvation -69.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds