Wall clock time and date at job start Sat Apr 11 2020 05:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46954 * 2 1 4 4 C 1.34231 * 116.99354 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00773 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99311 * 179.97438 * 4 3 2 7 7 H 1.08997 * 109.50982 * 299.91065 * 6 4 3 8 8 C 1.53098 * 109.50589 * 60.00575 * 6 4 3 9 9 O 1.43012 * 109.25861 * 176.78051 * 8 6 4 10 10 C 1.43012 * 113.73815 * 301.32833 * 9 8 6 11 11 C 1.53094 * 109.26124 * 58.66861 * 10 9 8 12 12 N 1.47013 * 109.25748 * 303.15354 * 11 10 9 13 13 C 1.38405 * 111.00033 * 182.39167 * 12 11 10 14 14 N 1.32745 * 119.44011 * 272.75920 * 13 12 11 15 15 C 1.31463 * 121.74492 * 179.97438 * 14 13 12 16 16 C 1.40791 * 120.38730 * 0.02562 * 15 14 13 17 17 C 1.41200 * 120.56422 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99854 * 335.36861 * 17 16 15 19 19 C 1.39865 * 119.99867 * 155.37676 * 17 16 15 20 20 N 1.30900 * 120.00246 * 343.80048 * 19 17 16 21 21 Si 1.86806 * 119.99916 * 163.80484 * 19 17 16 22 22 H 1.48499 * 109.46936 * 89.99556 * 21 19 17 23 23 H 1.48496 * 109.46886 * 209.99625 * 21 19 17 24 24 H 1.48496 * 109.46796 * 329.99478 * 21 19 17 25 25 C 1.41287 * 118.87079 * 359.97438 * 16 15 14 26 26 C 1.36665 * 118.39752 * 359.74562 * 25 16 15 27 27 Cl 1.73598 * 120.26008 * 180.25681 * 26 25 16 28 28 H 1.09003 * 109.47242 * 59.99676 * 1 2 3 29 29 H 1.08997 * 109.47273 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46940 * 299.99964 * 1 2 3 31 31 H 1.09003 * 109.47242 * 120.00324 * 2 1 3 32 32 H 1.09005 * 109.46940 * 240.00036 * 2 1 3 33 33 H 1.09004 * 109.50223 * 296.70884 * 8 6 4 34 34 H 1.08994 * 109.50961 * 56.83974 * 8 6 4 35 35 H 1.09005 * 109.51047 * 178.60867 * 10 9 8 36 36 H 1.09004 * 109.50472 * 298.73396 * 10 9 8 37 37 H 1.08997 * 109.50592 * 63.08684 * 11 10 9 38 38 H 1.09001 * 109.50848 * 183.21702 * 11 10 9 39 39 H 1.07996 * 119.80939 * 179.97438 * 15 14 13 40 40 H 0.97002 * 120.00244 * 180.02562 * 20 19 17 41 41 H 1.07999 * 120.79734 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5861 3.4693 -0.8917 8 6 3.4499 3.6859 1.2486 9 8 4.0589 4.9794 1.2812 10 6 5.4885 4.9427 1.2873 11 6 5.9801 4.2069 0.0380 12 7 5.3889 2.8613 0.0036 13 6 5.8519 2.1437 -1.0855 14 7 5.2254 2.2500 -2.2510 15 6 5.6265 1.5897 -3.3147 16 6 6.7468 0.7398 -3.2448 17 6 7.1812 0.0293 -4.3851 18 1 6.4841 -0.1969 -5.1784 19 6 8.5141 -0.3818 -4.4870 20 7 9.4235 0.1465 -3.7077 21 14 8.9968 -1.6848 -5.7356 22 1 9.3600 -1.0307 -7.0184 23 1 10.1605 -2.4529 -5.2247 24 1 7.8536 -2.6065 -5.9562 25 6 7.4296 0.6109 -2.0146 26 6 6.9749 1.3239 -0.9410 27 17 7.7813 1.2069 0.5918 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 2.3656 3.7947 1.2208 34 1 3.7373 3.1257 2.1383 35 1 5.8788 5.9604 1.2875 36 1 5.8353 4.4190 2.1782 37 1 5.6790 4.7595 -0.8520 38 1 7.0667 4.1264 0.0669 39 1 5.0931 1.6992 -4.2473 40 1 10.3480 -0.1384 -3.7786 41 1 8.2928 -0.0321 -1.9261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157336015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:24 Heat of formation + Delta-G solvation = -109.448673 kcal Electronic energy + Delta-G solvation = -28403.493882 eV Core-core repulsion = 24308.995453 eV Total energy + Delta-G solvation = -4094.498428 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.11742 -40.72102 -39.74933 -37.74287 -37.17583 -36.76220 -35.49164 -33.23307 -32.49324 -32.08995 -31.54491 -28.90344 -26.54866 -26.00278 -24.34424 -23.83930 -23.05394 -22.63287 -21.16077 -19.45649 -18.97519 -18.49907 -17.94889 -17.46069 -17.24929 -16.96315 -16.73484 -16.18461 -16.04191 -15.98332 -15.44111 -15.12850 -14.82224 -14.72014 -14.27672 -14.01200 -13.81398 -13.72478 -13.59201 -13.34158 -13.04935 -12.93404 -12.80483 -12.61261 -12.54425 -12.47436 -12.35931 -12.04474 -11.90035 -11.60863 -11.53506 -11.41682 -11.28671 -10.88904 -10.42083 -10.06676 -9.82558 -9.18096 -8.77996 -6.50196 0.54489 0.83083 1.20556 1.37159 1.45215 1.50634 1.50773 1.53004 2.13972 2.53525 2.60191 2.90503 3.45521 3.56888 3.80300 3.85114 3.97166 4.01503 4.09684 4.14431 4.23992 4.31688 4.35474 4.59796 4.61549 4.64449 4.66464 4.82980 4.85878 4.92383 4.93198 4.99305 5.09751 5.12840 5.16344 5.43009 5.63897 5.69219 5.83486 6.02087 6.14477 6.39435 6.64432 6.65724 6.80073 7.42272 8.15430 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011862 B = 0.004365 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.827256 B = 6412.935931 C = 7754.801069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.055 3.945 3 O -0.358 6.358 4 C 0.472 3.528 5 O -0.510 6.510 6 C 0.069 3.931 7 H 0.088 0.912 8 C 0.086 3.914 9 O -0.380 6.380 10 C 0.069 3.931 11 C 0.025 3.975 12 N -0.449 5.449 13 C 0.168 3.832 14 N -0.486 5.486 15 C -0.025 4.025 16 C 0.049 3.951 17 C -0.467 4.467 18 H 0.092 0.908 19 C 0.036 3.964 20 N -0.811 5.811 21 Si 0.988 3.012 22 H -0.257 1.257 23 H -0.266 1.266 24 H -0.257 1.257 25 C -0.146 4.146 26 C -0.015 4.015 27 Cl -0.079 7.079 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.134 0.866 34 H 0.068 0.932 35 H 0.132 0.868 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.085 0.915 39 H 0.142 0.858 40 H 0.295 0.705 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.717 3.522 7.711 12.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.019 4.019 3 O -0.275 6.275 4 C 0.313 3.687 5 O -0.396 6.396 6 C -0.040 4.040 7 H 0.106 0.894 8 C 0.009 3.991 9 O -0.298 6.298 10 C -0.007 4.007 11 C -0.101 4.101 12 N -0.173 5.173 13 C -0.062 4.062 14 N -0.198 5.198 15 C -0.187 4.187 16 C 0.044 3.956 17 C -0.496 4.496 18 H 0.110 0.890 19 C -0.182 4.182 20 N -0.435 5.435 21 Si 0.808 3.192 22 H -0.182 1.182 23 H -0.191 1.191 24 H -0.181 1.181 25 C -0.173 4.173 26 C -0.046 4.046 27 Cl -0.050 7.050 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.152 0.848 34 H 0.086 0.914 35 H 0.150 0.850 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.103 0.897 39 H 0.160 0.840 40 H 0.106 0.894 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.877 3.687 8.315 13.427 hybrid contribution 1.478 -1.355 -1.394 2.442 sum -8.399 2.333 6.921 11.130 Atomic orbital electron populations 1.21799 0.89438 1.04420 1.04010 1.23242 0.97565 0.79267 1.01778 1.86450 1.23262 1.33607 1.84179 1.23382 0.80912 0.92229 0.72142 1.90711 1.60879 1.43449 1.44550 1.21838 0.88912 0.90279 1.03017 0.89439 1.22664 0.99655 0.83558 0.93261 1.87992 1.20181 1.27080 1.94530 1.22867 0.80132 1.02253 0.95498 1.22963 1.00637 0.86938 0.99590 1.59701 1.04490 1.15587 1.37536 1.18475 0.96426 1.02679 0.88602 1.67054 1.30937 1.22488 0.99275 1.22511 1.00651 0.99754 0.95781 1.18707 0.92147 0.91516 0.93261 1.19816 0.95873 1.30395 1.03496 0.88980 1.26882 0.95625 0.97208 0.98450 1.69842 1.03703 1.35162 1.34833 0.85093 0.78764 0.77557 0.77772 1.18175 1.19078 1.18066 1.21285 1.02971 1.01953 0.91066 1.21058 0.96049 1.00500 0.86949 1.98236 1.78697 1.97399 1.30691 0.91431 0.88227 0.90289 0.91340 0.93226 0.84845 0.91377 0.85040 0.91141 0.94388 0.89703 0.84039 0.89398 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 10.29 71.98 0.74 -1.60 16 2 C 0.06 1.44 6.19 71.98 0.45 1.88 16 3 O -0.36 -11.04 10.15 -51.42 -0.52 -11.57 16 4 C 0.47 17.60 6.75 71.24 0.48 18.08 16 5 O -0.51 -23.10 14.58 21.97 0.32 -22.78 16 6 C 0.07 2.38 2.11 44.18 0.09 2.47 16 7 H 0.09 3.21 7.65 -2.39 -0.02 3.19 16 8 C 0.09 2.22 6.22 72.01 0.45 2.67 16 9 O -0.38 -9.83 10.83 -148.98 -1.61 -11.44 16 10 C 0.07 1.67 7.01 72.01 0.50 2.17 16 11 C 0.03 0.82 5.58 86.31 0.48 1.30 16 12 N -0.45 -17.23 3.74 -680.81 -2.54 -19.77 16 13 C 0.17 7.77 3.44 133.32 0.46 8.22 16 14 N -0.49 -23.44 8.87 -191.09 -1.69 -25.14 16 15 C -0.02 -1.24 10.97 85.37 0.94 -0.30 16 16 C 0.05 2.58 5.59 -21.18 -0.12 2.47 16 17 C -0.47 -23.80 9.07 23.39 0.21 -23.58 16 18 H 0.09 4.41 7.90 -2.91 -0.02 4.39 16 19 C 0.04 1.70 5.19 85.23 0.44 2.14 16 20 N -0.81 -40.29 10.90 21.82 0.24 -40.05 16 21 Si 0.99 35.85 29.59 68.60 2.03 37.88 16 22 H -0.26 -8.90 7.11 99.48 0.71 -8.20 16 23 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 24 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 25 C -0.15 -7.76 8.52 22.65 0.19 -7.57 16 26 C -0.02 -0.75 6.30 22.28 0.14 -0.61 16 27 Cl -0.08 -3.34 28.43 -2.72 -0.08 -3.42 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.07 1.75 8.13 -2.39 -0.02 1.73 16 32 H 0.05 1.47 8.13 -2.38 -0.02 1.45 16 33 H 0.13 2.75 8.14 -2.38 -0.02 2.73 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.13 2.36 8.14 -2.38 -0.02 2.34 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.14 6.54 8.06 -2.91 -0.02 6.52 16 40 H 0.30 13.19 8.30 -92.71 -0.77 12.42 16 41 H 0.12 6.83 6.20 -2.91 -0.02 6.81 16 Total: -1.00 -64.03 359.27 2.65 -61.38 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 1.06 Total: 27.16 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 5.46 Total: 7.75 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -4.00 Total: -84.96 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -1.81 Total: -45.79 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.88 kcal Atomic # 17 Polarization: -3.34 SS G_CDS: -0.08 Total: -3.42 kcal Total: -64.03 2.65 -61.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157336015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.071 kcal (2) G-P(sol) polarization free energy of solvation -64.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds