Wall clock time and date at job start Sat Apr 11 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45202 * 109.47253 * 2 1 4 4 C 1.34226 * 117.00200 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99961 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00325 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.50427 * 59.91137 * 6 4 3 8 8 C 1.53102 * 109.50391 * 299.78507 * 6 4 3 9 9 O 1.43014 * 109.25742 * 183.21576 * 8 6 4 10 10 C 1.43020 * 113.73622 * 58.66661 * 9 8 6 11 11 C 1.53095 * 109.26009 * 301.32646 * 10 9 8 12 12 N 1.47011 * 109.25387 * 56.85471 * 11 10 9 13 13 C 1.38412 * 110.99754 * 177.60506 * 12 11 10 14 14 N 1.32748 * 119.43400 * 86.43860 * 13 12 11 15 15 C 1.31469 * 121.73869 * 179.97438 * 14 13 12 16 16 C 1.40792 * 120.39061 * 359.97438 * 15 14 13 17 17 C 1.41194 * 120.56819 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00075 * 330.40755 * 17 16 15 19 19 C 1.39868 * 120.00283 * 150.40926 * 17 16 15 20 20 N 1.30902 * 119.99490 * 345.08685 * 19 17 16 21 21 Si 1.86796 * 120.00111 * 165.08978 * 19 17 16 22 22 H 1.48496 * 109.47014 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47178 * 119.99915 * 21 19 17 24 24 H 1.48506 * 109.46879 * 239.99733 * 21 19 17 25 25 C 1.41285 * 118.86672 * 0.02562 * 16 15 14 26 26 C 1.36671 * 118.40089 * 359.74427 * 25 16 15 27 27 Cl 1.73600 * 120.26076 * 180.24659 * 26 25 16 28 28 H 1.09000 * 109.47159 * 60.00300 * 1 2 3 29 29 H 1.09002 * 109.47364 * 300.00298 * 1 2 3 30 30 H 1.09000 * 109.47086 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47159 * 119.99700 * 2 1 3 32 32 H 1.09002 * 109.47364 * 239.99702 * 2 1 3 33 33 H 1.09004 * 109.50566 * 303.14510 * 8 6 4 34 34 H 1.08991 * 109.50922 * 63.27632 * 8 6 4 35 35 H 1.09011 * 109.50098 * 181.39279 * 10 9 8 36 36 H 1.08999 * 109.54573 * 61.29095 * 10 9 8 37 37 H 1.09001 * 109.50645 * 296.91967 * 11 10 9 38 38 H 1.09005 * 109.50549 * 176.78722 * 11 10 9 39 39 H 1.08004 * 119.80722 * 179.97438 * 15 14 13 40 40 H 0.97007 * 119.99389 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.79659 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5834 3.4711 0.8885 8 6 3.4543 3.6830 -1.2532 9 8 4.0634 4.9765 -1.2866 10 6 5.4932 4.9397 -1.2874 11 6 5.9802 4.2069 -0.0345 12 7 5.3889 2.8614 0.0007 13 6 5.8480 2.1463 1.0933 14 7 5.2268 2.2677 2.2601 15 6 5.6240 1.6097 3.3268 16 6 6.7339 0.7462 3.2587 17 6 7.1640 0.0380 4.4020 18 1 7.0095 0.4559 5.3858 19 6 7.7900 -1.2047 4.2605 20 7 7.7213 -1.8462 3.1215 21 14 8.7241 -1.9489 5.6968 22 1 8.6527 -1.0315 6.8623 23 1 8.1184 -3.2559 6.0572 24 1 10.1443 -2.1506 5.3125 25 6 7.4107 0.6012 2.0270 26 6 6.9542 1.3043 0.9476 27 17 7.7455 1.1574 -0.5905 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.7451 3.1208 -2.1406 34 1 2.3701 3.7918 -1.2296 35 1 5.8834 5.9576 -1.2886 36 1 5.8439 4.4145 -2.1758 37 1 5.6758 4.7616 0.8530 38 1 7.0670 4.1264 -0.0594 39 1 5.0957 1.7322 4.2608 40 1 8.1552 -2.7082 3.0235 41 1 8.2655 -0.0532 1.9395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157336016.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:28 Heat of formation + Delta-G solvation = -92.436605 kcal Electronic energy + Delta-G solvation = -28462.608196 eV Core-core repulsion = 24368.847466 eV Total energy + Delta-G solvation = -4093.760730 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.63590 -39.20505 -38.24418 -36.28831 -35.40366 -35.18504 -33.75186 -32.02821 -31.04399 -30.61155 -29.80608 -27.37718 -25.04036 -24.54436 -23.12939 -22.17843 -21.43262 -21.18940 -19.72621 -17.62883 -17.47333 -16.99375 -16.58588 -15.86977 -15.77032 -15.65569 -15.16479 -14.87245 -14.64364 -14.26615 -14.10681 -13.84382 -13.36023 -13.09524 -12.82802 -12.72342 -12.40561 -12.24287 -11.92653 -11.77638 -11.61190 -11.54531 -11.48020 -11.35205 -11.19860 -10.91835 -10.75679 -10.58949 -10.35302 -10.26938 -10.00920 -9.85701 -9.56551 -9.48465 -8.69769 -8.29311 -8.09003 -7.37197 -6.95508 -4.62575 2.35017 2.66462 2.75714 2.83359 2.96633 2.99006 3.02081 3.33651 3.76640 3.84043 4.19403 4.37111 4.85226 4.99705 5.02203 5.12032 5.14010 5.24770 5.33752 5.38601 5.41508 5.48928 5.71353 5.75777 5.78502 5.83231 5.91165 5.97751 6.00149 6.17668 6.48227 6.54769 6.76610 6.82641 6.94104 6.97757 7.07825 7.19463 7.53704 7.69021 7.93291 8.21464 8.28781 8.50638 8.52334 9.27031 9.95372 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011587 B = 0.004478 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.921168 B = 6251.396679 C = 7544.873364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.366 6.366 4 C 0.467 3.533 5 O -0.462 6.462 6 C 0.072 3.928 7 H 0.098 0.902 8 C 0.077 3.923 9 O -0.379 6.379 10 C 0.062 3.938 11 C 0.027 3.973 12 N -0.443 5.443 13 C 0.159 3.841 14 N -0.483 5.483 15 C -0.005 4.005 16 C 0.077 3.923 17 C -0.446 4.446 18 H 0.087 0.913 19 C 0.073 3.927 20 N -0.782 5.782 21 Si 0.914 3.086 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.270 1.270 25 C -0.124 4.124 26 C 0.001 3.999 27 Cl -0.099 7.099 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.286 0.714 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.554 5.753 -6.257 10.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 O -0.284 6.284 4 C 0.307 3.693 5 O -0.344 6.344 6 C -0.038 4.038 7 H 0.116 0.884 8 C 0.000 4.000 9 O -0.297 6.297 10 C -0.015 4.015 11 C -0.100 4.100 12 N -0.167 5.167 13 C -0.070 4.070 14 N -0.194 5.194 15 C -0.168 4.168 16 C 0.072 3.928 17 C -0.475 4.475 18 H 0.106 0.894 19 C -0.147 4.147 20 N -0.405 5.405 21 Si 0.738 3.262 22 H -0.182 1.182 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.151 4.151 26 C -0.029 4.029 27 Cl -0.071 7.071 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.149 0.851 40 H 0.097 0.903 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.875 5.656 -6.923 11.278 hybrid contribution 1.190 -1.300 1.256 2.164 sum -5.686 4.356 -5.667 9.133 Atomic orbital electron populations 1.21779 0.92945 1.02652 1.03243 1.22923 0.94877 0.80627 1.02628 1.86432 1.24931 1.32058 1.85021 1.23082 0.80351 0.92250 0.73659 1.90763 1.59692 1.42027 1.41941 1.21666 0.90110 0.90604 1.01420 0.88438 1.22591 0.98307 0.83966 0.95143 1.87980 1.19716 1.27255 1.94790 1.22758 0.80669 1.00813 0.97269 1.22855 1.00827 0.88243 0.98037 1.59625 1.03322 1.14439 1.39318 1.18204 0.98162 1.02846 0.87766 1.67011 1.30623 1.22641 0.99095 1.22322 0.97384 1.02007 0.95121 1.18420 0.89983 0.91394 0.93006 1.19531 1.32301 1.01543 0.94133 0.89450 1.26005 0.94414 0.96958 0.97352 1.69834 1.32267 1.12951 1.25478 0.86148 0.79545 0.79265 0.81228 1.18153 1.19739 1.19469 1.21228 1.01503 1.00660 0.91677 1.20854 0.96112 0.99792 0.86177 1.98251 1.79739 1.97250 1.31815 0.91701 0.91556 0.90525 0.91292 0.91527 0.92007 0.87449 0.88290 0.92026 0.93288 0.89191 0.85061 0.90289 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.29 37.15 0.38 -1.12 16 2 C 0.06 0.90 6.19 37.15 0.23 1.13 16 3 O -0.37 -6.03 10.15 -39.25 -0.40 -6.43 16 4 C 0.47 9.02 6.77 36.01 0.24 9.26 16 5 O -0.46 -10.71 14.56 -18.75 -0.27 -10.98 16 6 C 0.07 1.27 2.12 -68.75 -0.15 1.13 16 7 H 0.10 1.81 7.65 -51.93 -0.40 1.42 16 8 C 0.08 1.10 6.22 37.21 0.23 1.33 16 9 O -0.38 -5.42 10.83 -35.23 -0.38 -5.80 16 10 C 0.06 0.81 7.01 37.21 0.26 1.07 16 11 C 0.03 0.44 5.58 -3.71 -0.02 0.42 16 12 N -0.44 -8.52 3.74 -166.54 -0.62 -9.15 16 13 C 0.16 3.59 3.44 -155.05 -0.53 3.06 16 14 N -0.48 -11.31 8.91 -11.75 -0.10 -11.42 16 15 C -0.01 -0.12 10.97 -16.74 -0.18 -0.31 16 16 C 0.08 1.96 5.53 -106.65 -0.59 1.37 16 17 C -0.45 -11.04 9.05 -37.85 -0.34 -11.39 16 18 H 0.09 2.04 7.89 -52.48 -0.41 1.63 16 19 C 0.07 1.73 5.18 -17.34 -0.09 1.64 16 20 N -0.78 -19.57 11.17 55.54 0.62 -18.94 16 21 Si 0.91 17.64 29.58 -169.99 -5.03 12.61 16 22 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 23 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 25 C -0.12 -3.16 8.48 -38.99 -0.33 -3.49 16 26 C 0.00 0.02 6.26 -39.57 -0.25 -0.23 16 27 Cl -0.10 -2.08 28.43 -51.86 -1.47 -3.55 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16 32 H 0.07 0.93 8.13 -51.93 -0.42 0.50 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.10 1.03 8.14 -51.92 -0.42 0.60 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.13 2.93 8.06 -52.48 -0.42 2.50 16 40 H 0.29 6.50 8.30 -40.82 -0.34 6.17 16 41 H 0.13 3.48 6.54 -52.48 -0.34 3.13 16 LS Contribution 359.76 15.07 5.42 5.42 Total: -1.00 -29.32 359.76 -8.74 -38.06 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.36 Total: 6.30 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.14 Total: 3.88 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: -0.11 Total: -39.51 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -1.05 Total: -23.21 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -1.47 Total: -3.55 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.32 -8.74 -38.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157336016.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.377 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds