Wall clock time and date at job start Sat Apr 11 2020 05:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45202 * 109.47253 * 2 1 4 4 C 1.34226 * 117.00200 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99961 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00325 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.50427 * 59.91137 * 6 4 3 8 8 C 1.53102 * 109.50391 * 299.78507 * 6 4 3 9 9 O 1.43014 * 109.25742 * 183.21576 * 8 6 4 10 10 C 1.43020 * 113.73622 * 58.66661 * 9 8 6 11 11 C 1.53095 * 109.26009 * 301.32646 * 10 9 8 12 12 N 1.47011 * 109.25387 * 56.85471 * 11 10 9 13 13 C 1.38412 * 110.99754 * 177.60506 * 12 11 10 14 14 N 1.32748 * 119.43400 * 86.43860 * 13 12 11 15 15 C 1.31469 * 121.73869 * 179.97438 * 14 13 12 16 16 C 1.40792 * 120.39061 * 359.97438 * 15 14 13 17 17 C 1.41194 * 120.56819 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00075 * 330.40755 * 17 16 15 19 19 C 1.39868 * 120.00283 * 150.40926 * 17 16 15 20 20 N 1.30902 * 119.99490 * 345.08685 * 19 17 16 21 21 Si 1.86796 * 120.00111 * 165.08978 * 19 17 16 22 22 H 1.48496 * 109.47014 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47178 * 119.99915 * 21 19 17 24 24 H 1.48506 * 109.46879 * 239.99733 * 21 19 17 25 25 C 1.41285 * 118.86672 * 0.02562 * 16 15 14 26 26 C 1.36671 * 118.40089 * 359.74427 * 25 16 15 27 27 Cl 1.73600 * 120.26076 * 180.24659 * 26 25 16 28 28 H 1.09000 * 109.47159 * 60.00300 * 1 2 3 29 29 H 1.09002 * 109.47364 * 300.00298 * 1 2 3 30 30 H 1.09000 * 109.47086 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47159 * 119.99700 * 2 1 3 32 32 H 1.09002 * 109.47364 * 239.99702 * 2 1 3 33 33 H 1.09004 * 109.50566 * 303.14510 * 8 6 4 34 34 H 1.08991 * 109.50922 * 63.27632 * 8 6 4 35 35 H 1.09011 * 109.50098 * 181.39279 * 10 9 8 36 36 H 1.08999 * 109.54573 * 61.29095 * 10 9 8 37 37 H 1.09001 * 109.50645 * 296.91967 * 11 10 9 38 38 H 1.09005 * 109.50549 * 176.78722 * 11 10 9 39 39 H 1.08004 * 119.80722 * 179.97438 * 15 14 13 40 40 H 0.97007 * 119.99389 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.79659 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5834 3.4711 0.8885 8 6 3.4543 3.6830 -1.2532 9 8 4.0634 4.9765 -1.2866 10 6 5.4932 4.9397 -1.2874 11 6 5.9802 4.2069 -0.0345 12 7 5.3889 2.8614 0.0007 13 6 5.8480 2.1463 1.0933 14 7 5.2268 2.2677 2.2601 15 6 5.6240 1.6097 3.3268 16 6 6.7339 0.7462 3.2587 17 6 7.1640 0.0380 4.4020 18 1 7.0095 0.4559 5.3858 19 6 7.7900 -1.2047 4.2605 20 7 7.7213 -1.8462 3.1215 21 14 8.7241 -1.9489 5.6968 22 1 8.6527 -1.0315 6.8623 23 1 8.1184 -3.2559 6.0572 24 1 10.1443 -2.1506 5.3125 25 6 7.4107 0.6012 2.0270 26 6 6.9542 1.3043 0.9476 27 17 7.7455 1.1574 -0.5905 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.7451 3.1208 -2.1406 34 1 2.3701 3.7918 -1.2296 35 1 5.8834 5.9576 -1.2886 36 1 5.8439 4.4145 -2.1758 37 1 5.6758 4.7616 0.8530 38 1 7.0670 4.1264 -0.0594 39 1 5.0957 1.7322 4.2608 40 1 8.1552 -2.7082 3.0235 41 1 8.2655 -0.0532 1.9395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157336016.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:27 Heat of formation + Delta-G solvation = -109.941725 kcal Electronic energy + Delta-G solvation = -28463.367275 eV Core-core repulsion = 24368.847466 eV Total energy + Delta-G solvation = -4094.519809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.12525 -40.73248 -39.75368 -37.74945 -37.18529 -36.75329 -35.46762 -33.23927 -32.52939 -32.10124 -31.54404 -28.89551 -26.54663 -26.00248 -24.35326 -23.86234 -23.06557 -22.63733 -21.16443 -19.43947 -18.98091 -18.50027 -17.95202 -17.46462 -17.24382 -16.97734 -16.75342 -16.19945 -16.04196 -15.96789 -15.45351 -15.13737 -14.82890 -14.69631 -14.32212 -14.00189 -13.83517 -13.71185 -13.59939 -13.33155 -13.08365 -12.95823 -12.81679 -12.64891 -12.54998 -12.43968 -12.39541 -11.98774 -11.88171 -11.64760 -11.55022 -11.40403 -11.24266 -10.90921 -10.38279 -10.13421 -9.83561 -9.15715 -8.74159 -6.51682 0.52588 0.80423 1.20405 1.37460 1.42650 1.50049 1.51664 1.53806 2.14975 2.56154 2.57730 2.90320 3.43153 3.56414 3.78701 3.83608 3.95312 4.00915 4.08406 4.14516 4.24490 4.30510 4.35361 4.59036 4.60356 4.62889 4.66192 4.81853 4.85630 4.91050 4.93611 5.00127 5.10126 5.11592 5.14919 5.42450 5.64349 5.68713 5.81048 6.02291 6.14043 6.39462 6.65294 6.66551 6.79625 7.39877 8.19451 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011587 B = 0.004478 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.921168 B = 6251.396679 C = 7544.873364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.056 3.944 3 O -0.358 6.358 4 C 0.468 3.532 5 O -0.509 6.509 6 C 0.070 3.930 7 H 0.089 0.911 8 C 0.087 3.913 9 O -0.379 6.379 10 C 0.068 3.932 11 C 0.026 3.974 12 N -0.451 5.451 13 C 0.173 3.827 14 N -0.487 5.487 15 C -0.018 4.018 16 C 0.052 3.948 17 C -0.473 4.473 18 H 0.094 0.906 19 C 0.034 3.966 20 N -0.820 5.820 21 Si 0.990 3.010 22 H -0.251 1.251 23 H -0.267 1.267 24 H -0.265 1.265 25 C -0.140 4.140 26 C -0.015 4.015 27 Cl -0.077 7.077 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.088 0.912 39 H 0.144 0.856 40 H 0.293 0.707 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.465 6.738 -6.946 12.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.018 4.018 3 O -0.275 6.275 4 C 0.310 3.690 5 O -0.395 6.395 6 C -0.039 4.039 7 H 0.107 0.893 8 C 0.009 3.991 9 O -0.297 6.297 10 C -0.009 4.009 11 C -0.100 4.100 12 N -0.175 5.175 13 C -0.056 4.056 14 N -0.199 5.199 15 C -0.181 4.181 16 C 0.047 3.953 17 C -0.502 4.502 18 H 0.112 0.888 19 C -0.182 4.182 20 N -0.445 5.445 21 Si 0.810 3.190 22 H -0.174 1.174 23 H -0.192 1.192 24 H -0.189 1.189 25 C -0.167 4.167 26 C -0.045 4.045 27 Cl -0.049 7.049 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.117 0.883 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.106 0.894 39 H 0.161 0.839 40 H 0.103 0.897 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.821 6.676 -7.620 12.798 hybrid contribution 1.393 -1.559 1.332 2.479 sum -6.427 5.117 -6.289 10.346 Atomic orbital electron populations 1.21792 0.89279 1.04414 1.04085 1.23221 0.97659 0.79330 1.01600 1.86440 1.23343 1.33474 1.84219 1.23479 0.80919 0.92379 0.72236 1.90748 1.60875 1.43515 1.44400 1.21839 0.88973 0.90046 1.03082 0.89308 1.22647 0.99679 0.83607 0.93145 1.87996 1.20261 1.26969 1.94517 1.22885 0.80106 1.02355 0.95518 1.22971 1.00751 0.86652 0.99654 1.59659 1.04571 1.15955 1.37364 1.18506 0.96985 1.01906 0.88248 1.67090 1.30748 1.22743 0.99301 1.22552 0.97394 1.02154 0.95969 1.18705 0.90698 0.92297 0.93592 1.19813 1.33734 1.02421 0.94235 0.88782 1.26898 0.94491 0.96840 1.00020 1.69899 1.33253 1.13666 1.27680 0.85031 0.77965 0.78366 0.77674 1.17385 1.19152 1.18920 1.21178 1.01581 1.01282 0.92645 1.21030 0.96848 0.99802 0.86850 1.98238 1.79317 1.97195 1.30143 0.90131 0.91371 0.88300 0.93581 0.91451 0.91474 0.84905 0.84887 0.91231 0.94097 0.89354 0.83900 0.89659 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 10.29 71.98 0.74 -1.77 16 2 C 0.06 1.55 6.19 71.98 0.45 2.00 16 3 O -0.36 -11.51 10.15 -51.37 -0.52 -12.03 16 4 C 0.47 18.04 6.77 71.24 0.48 18.52 16 5 O -0.51 -24.12 14.56 21.95 0.32 -23.80 16 6 C 0.07 2.43 2.12 44.18 0.09 2.52 16 7 H 0.09 3.25 7.65 -2.39 -0.02 3.23 16 8 C 0.09 2.25 6.22 72.02 0.45 2.69 16 9 O -0.38 -9.65 10.83 -148.98 -1.61 -11.26 16 10 C 0.07 1.58 7.01 72.01 0.50 2.08 16 11 C 0.03 0.81 5.58 86.31 0.48 1.29 16 12 N -0.45 -17.14 3.74 -680.82 -2.54 -19.68 16 13 C 0.17 7.95 3.44 133.32 0.46 8.40 16 14 N -0.49 -23.32 8.91 -191.08 -1.70 -25.02 16 15 C -0.02 -0.92 10.97 85.37 0.94 0.02 16 16 C 0.05 2.75 5.53 -21.18 -0.12 2.64 16 17 C -0.47 -24.13 9.05 23.39 0.21 -23.92 16 18 H 0.09 4.49 7.89 -2.91 -0.02 4.47 16 19 C 0.03 1.64 5.18 85.23 0.44 2.08 16 20 N -0.82 -42.34 11.17 21.82 0.24 -42.10 16 21 Si 0.99 36.34 29.58 68.60 2.03 38.37 16 22 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 23 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 24 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 25 C -0.14 -7.42 8.48 22.65 0.19 -7.23 16 26 C -0.01 -0.73 6.26 22.28 0.14 -0.59 16 27 Cl -0.08 -3.28 28.43 -2.72 -0.08 -3.35 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.49 8.13 -2.39 -0.02 1.47 16 32 H 0.07 1.86 8.13 -2.39 -0.02 1.84 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 39 H 0.14 6.57 8.06 -2.91 -0.02 6.54 16 40 H 0.29 13.66 8.30 -92.70 -0.77 12.89 16 41 H 0.12 6.45 6.54 -2.91 -0.02 6.43 16 Total: -1.00 -65.51 359.76 2.65 -62.86 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 1.05 Total: 27.28 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 5.46 Total: 8.73 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -4.00 Total: -86.80 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -1.82 Total: -47.09 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Atomic # 17 Polarization: -3.28 SS G_CDS: -0.08 Total: -3.35 kcal Total: -65.51 2.65 -62.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157336016.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.079 kcal (2) G-P(sol) polarization free energy of solvation -65.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds