Wall clock time and date at job start Sat Apr 11 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34752 * 116.99890 * 2 1 4 4 O 1.21511 * 120.00370 * 0.02562 * 3 2 1 5 5 C 1.47445 * 120.00186 * 180.02562 * 3 2 1 6 6 C 1.39819 * 120.07900 * 0.31743 * 5 3 2 7 7 C 1.37638 * 119.92104 * 180.22750 * 6 5 3 8 8 C 1.39154 * 120.07760 * 359.47954 * 7 6 5 9 9 N 1.39393 * 119.91932 * 180.27274 * 8 7 6 10 10 C 1.34772 * 120.00010 * 148.74526 * 9 8 7 11 11 O 1.21569 * 119.99929 * 0.35046 * 10 9 8 12 12 N 1.34772 * 120.00107 * 180.34326 * 10 9 8 13 13 C 1.38726 * 120.00066 * 185.96299 * 12 10 9 14 14 C 1.38840 * 119.99810 * 300.38053 * 13 12 10 15 15 H 1.08003 * 119.99673 * 150.47879 * 14 13 12 16 16 C 1.40917 * 120.00395 * 330.48077 * 14 13 12 17 17 N 1.30297 * 119.99976 * 156.11210 * 16 14 13 18 18 Si 1.86794 * 119.99809 * 336.11939 * 16 14 13 19 19 H 1.48496 * 109.47459 * 83.12235 * 18 16 14 20 20 H 1.48503 * 109.46894 * 203.12126 * 18 16 14 21 21 H 1.48496 * 109.47161 * 323.11779 * 18 16 14 22 22 C 1.41072 * 119.99940 * 120.38179 * 13 12 10 23 23 C 1.43196 * 119.99870 * 185.33366 * 22 13 12 24 24 N 9.25421 * 136.38734 * 169.93410 * 7 1 2 25 25 C 1.43204 * 119.99989 * 5.33838 * 22 13 12 26 26 N 8.75483 * 165.86866 * 283.83108 * 5 1 2 27 27 C 1.39152 * 120.15848 * 0.25362 * 8 7 6 28 28 C 1.37633 * 120.08002 * 359.97438 * 27 8 7 29 29 H 1.09005 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47064 * 299.99142 * 1 2 3 31 31 H 1.08996 * 109.47215 * 59.99468 * 1 2 3 32 32 H 1.08002 * 120.03895 * 0.02562 * 6 5 3 33 33 H 1.08003 * 119.95807 * 179.75299 * 7 6 5 34 34 H 0.96997 * 119.99993 * 328.74492 * 9 8 7 35 35 H 0.97006 * 120.00129 * 5.96256 * 12 10 9 36 36 H 0.96997 * 119.99640 * 180.02562 * 17 16 14 37 37 H 1.08001 * 119.95797 * 180.02562 * 27 8 7 38 38 H 1.08006 * 120.03832 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4020 2.2198 0.0005 5 6 3.5361 1.2779 -0.0006 6 6 4.2993 0.1064 -0.0078 7 6 5.6736 0.1823 -0.0036 8 6 6.3036 1.4230 -0.0031 9 7 7.6956 1.4960 -0.0045 10 6 8.3156 2.5283 -0.6098 11 8 7.6607 3.3991 -1.1489 12 7 9.6617 2.5953 -0.6172 13 6 10.2976 3.7165 -1.1299 14 6 10.0920 4.0874 -2.4520 15 1 10.1554 5.1272 -2.7372 16 6 9.8008 3.1073 -3.4216 17 7 9.1664 3.4369 -4.5110 18 14 10.3238 1.3355 -3.1451 19 1 9.3169 0.6486 -2.2971 20 1 10.4267 0.6399 -4.4531 21 1 11.6439 1.3095 -2.4656 22 6 11.1530 4.4799 -0.3079 23 6 11.7191 5.6994 -0.8008 24 7 12.1685 6.6561 -1.2470 25 6 11.4553 4.0352 1.0193 26 7 11.6943 3.6837 2.0738 27 6 5.5473 2.5911 -0.0015 28 6 4.1726 2.5228 -0.0010 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 3.8110 -0.8569 -0.0134 33 1 6.2637 -0.7223 -0.0051 34 1 8.2180 0.8039 0.4301 35 1 10.1859 1.8594 -0.2640 36 1 8.9656 2.7622 -5.1783 37 1 6.0396 3.5523 -0.0015 38 1 3.5863 3.4298 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187805414.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:45 Heat of formation + Delta-G solvation = -15.084141 kcal Electronic energy + Delta-G solvation = -27654.395178 eV Core-core repulsion = 23462.881209 eV Total energy + Delta-G solvation = -4191.513969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.100 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.97404 -40.45358 -38.79279 -36.81083 -36.47657 -35.13347 -34.65123 -34.55948 -33.92278 -31.21752 -31.07481 -29.78230 -27.74757 -27.34351 -24.37151 -23.06714 -22.25353 -21.05713 -20.78599 -19.23017 -18.63657 -18.13794 -17.77519 -17.30444 -17.08335 -16.51541 -16.40226 -15.57465 -15.29319 -14.89602 -14.62099 -14.23441 -13.94554 -13.67450 -13.55858 -13.47512 -13.08487 -12.79989 -12.73175 -12.70499 -12.48042 -12.33347 -12.02921 -11.77204 -11.60522 -11.50619 -11.38772 -11.05878 -11.02647 -10.97982 -10.72573 -10.71836 -10.50480 -10.21727 -9.90912 -9.17605 -9.11107 -8.29030 -7.99321 -7.85136 -5.41854 0.56223 1.28968 1.84487 2.34815 2.45426 2.51525 2.61749 2.65348 2.82925 3.18452 3.32550 3.74750 3.76885 3.95492 3.97822 4.15087 4.34685 4.56062 4.74093 4.80283 4.85766 4.92581 5.06418 5.15712 5.21571 5.30810 5.41292 5.44094 5.84824 5.93089 6.04670 6.12193 6.13248 6.24479 6.30578 6.41416 6.65414 6.79448 6.85852 7.15049 7.40289 7.59310 7.62316 7.88980 7.96634 8.65559 8.85089 9.07175 9.11905 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014993 B = 0.002923 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.066622 B = 9577.825480 C =10092.686681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.513 3.487 4 O -0.510 6.510 5 C -0.161 4.161 6 C -0.038 4.038 7 C -0.171 4.171 8 C 0.219 3.781 9 N -0.685 5.685 10 C 0.708 3.292 11 O -0.526 6.526 12 N -0.687 5.687 13 C 0.333 3.667 14 C -0.320 4.320 15 H 0.125 0.875 16 C 0.075 3.925 17 N -0.704 5.704 18 Si 0.916 3.084 19 H -0.259 1.259 20 H -0.272 1.272 21 H -0.238 1.238 22 C -0.300 4.300 23 C 0.320 3.680 24 N -0.529 5.529 25 C 0.307 3.693 26 N -0.536 5.536 27 C -0.138 4.138 28 C -0.028 4.028 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.409 0.591 35 H 0.395 0.605 36 H 0.305 0.695 37 H 0.159 0.841 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.367 -16.011 2.255 20.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.358 3.642 4 O -0.400 6.400 5 C -0.163 4.163 6 C -0.057 4.057 7 C -0.192 4.192 8 C 0.121 3.879 9 N -0.332 5.332 10 C 0.409 3.591 11 O -0.397 6.397 12 N -0.339 5.339 13 C 0.232 3.768 14 C -0.346 4.346 15 H 0.142 0.858 16 C -0.159 4.159 17 N -0.320 5.320 18 Si 0.738 3.262 19 H -0.183 1.183 20 H -0.198 1.198 21 H -0.160 1.160 22 C -0.318 4.318 23 C 0.012 3.988 24 N -0.211 5.211 25 C 0.001 3.999 26 N -0.219 5.219 27 C -0.158 4.158 28 C -0.047 4.047 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.245 0.755 35 H 0.231 0.769 36 H 0.117 0.883 37 H 0.176 0.824 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.194 -13.928 2.407 19.335 hybrid contribution 0.089 -1.614 -0.011 1.616 sum -13.105 -15.542 2.395 20.470 Atomic orbital electron populations 1.23256 0.76185 1.03604 1.02637 1.86544 1.23407 1.32911 1.84594 1.21198 0.89201 0.81282 0.72473 1.90841 1.66867 1.35994 1.46272 1.18996 0.88654 0.95109 1.13584 1.21123 0.92811 0.97826 0.93968 1.20799 0.94719 0.96136 1.07533 1.17823 0.81791 0.94098 0.94189 1.42662 1.05056 1.27340 1.58117 1.15615 0.81956 0.82125 0.79398 1.91021 1.63316 1.38445 1.46941 1.42501 1.04758 1.21679 1.64955 1.16446 0.88733 0.81070 0.90523 1.20038 1.26276 0.98474 0.89778 0.85751 1.26803 0.91200 1.03517 0.94380 1.69451 1.16983 1.39457 1.06143 0.86172 0.81682 0.78383 0.80000 1.18330 1.19780 1.16042 1.12597 1.25923 1.01976 0.91320 1.25046 0.90749 0.91119 0.91843 1.81545 1.16010 1.14356 1.09210 1.25255 0.91116 0.92116 0.91418 1.81122 1.15682 1.12563 1.12509 1.21455 0.92894 0.99527 1.01949 1.21163 0.94030 0.96630 0.92871 0.88090 0.91885 0.91847 0.84302 0.84837 0.75506 0.76895 0.88297 0.82384 0.84238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.33 16 2 O -0.36 -3.68 9.81 -40.63 -0.40 -4.08 16 3 C 0.51 6.45 7.89 34.48 0.27 6.72 16 4 O -0.51 -7.67 16.13 -19.27 -0.31 -7.98 16 5 C -0.16 -1.96 5.88 -104.97 -0.62 -2.58 16 6 C -0.04 -0.39 9.60 -39.21 -0.38 -0.76 16 7 C -0.17 -1.73 9.93 -39.46 -0.39 -2.12 16 8 C 0.22 2.80 6.35 -83.74 -0.53 2.27 16 9 N -0.69 -8.74 5.33 -14.23 -0.08 -8.82 16 10 C 0.71 11.88 6.79 -86.93 -0.59 11.29 16 11 O -0.53 -10.72 12.72 5.30 0.07 -10.65 16 12 N -0.69 -11.42 2.28 -13.99 -0.03 -11.46 16 13 C 0.33 6.61 4.85 -83.45 -0.40 6.21 16 14 C -0.32 -6.86 7.90 -38.35 -0.30 -7.16 16 15 H 0.12 2.98 7.38 -52.48 -0.39 2.59 16 16 C 0.08 1.50 5.03 -17.19 -0.09 1.42 16 17 N -0.70 -14.69 13.90 55.60 0.77 -13.92 16 18 Si 0.92 14.66 25.38 -169.99 -4.31 10.34 16 19 H -0.26 -3.76 6.60 56.52 0.37 -3.38 16 20 H -0.27 -4.29 7.11 56.52 0.40 -3.89 16 21 H -0.24 -3.68 7.11 56.52 0.40 -3.28 16 22 C -0.30 -6.30 5.88 -104.97 -0.62 -6.91 16 23 C 0.32 7.32 14.03 -22.10 -0.31 7.01 16 24 N -0.53 -12.77 18.61 42.31 0.79 -11.98 16 25 C 0.31 6.42 14.80 -22.44 -0.33 6.09 16 26 N -0.54 -11.54 18.54 41.87 0.78 -10.76 16 27 C -0.14 -1.97 8.66 -39.46 -0.34 -2.31 16 28 C -0.03 -0.37 9.58 -39.21 -0.38 -0.74 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.14 1.08 7.60 -52.49 -0.40 0.68 16 33 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.41 3.74 8.82 -40.82 -0.36 3.38 16 35 H 0.40 5.38 8.26 -40.82 -0.34 5.04 16 36 H 0.31 5.59 8.28 -40.82 -0.34 5.25 16 37 H 0.16 2.57 6.04 -52.49 -0.32 2.25 16 38 H 0.14 1.79 7.64 -52.48 -0.40 1.39 16 LS Contribution 357.78 15.07 5.39 5.39 Total: -1.00 -29.16 357.78 -4.33 -33.49 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -3.05 Total: 10.65 kcal Atomic # 6 Polarization: 23.70 SS G_CDS: -3.94 Total: 19.76 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 2.23 Total: -56.93 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.64 Total: -22.71 kcal Atomic # 14 Polarization: 14.66 SS G_CDS: -4.31 Total: 10.34 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.16 -4.33 -33.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187805414.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.408 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds