Wall clock time and date at job start Sat Apr 11 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35809 * 126.05587 * 2 1 4 4 C 1.35754 * 107.56983 * 180.02562 * 3 2 1 5 5 N 1.40758 * 126.08540 * 180.02562 * 4 3 2 6 6 C 1.34290 * 124.17432 * 0.02562 * 5 4 3 7 7 O 1.21308 * 124.90455 * 359.24054 * 6 5 4 8 8 C 1.51144 * 110.18533 * 179.25970 * 6 5 4 9 9 C 1.54586 * 104.58906 * 15.91521 * 8 6 5 10 10 H 1.08997 * 112.76345 * 98.06177 * 9 8 6 11 11 C 1.46381 * 124.17476 * 179.72541 * 5 4 3 12 12 H 1.09003 * 112.39561 * 42.00882 * 11 5 4 13 13 C 1.56029 * 110.30174 * 274.98911 * 11 5 4 14 14 C 1.54882 * 101.85974 * 212.57155 * 13 11 5 15 15 N 1.47020 * 108.63901 * 223.61878 * 9 8 6 16 16 S 1.65599 * 125.54802 * 290.53680 * 15 9 8 17 17 O 1.42102 * 106.40621 * 203.53707 * 16 15 9 18 18 O 1.42104 * 106.40569 * 336.46415 * 16 15 9 19 19 C 1.76204 * 107.21666 * 90.00148 * 16 15 9 20 20 H 1.08000 * 120.00167 * 359.97438 * 19 16 15 21 21 C 1.37877 * 120.00107 * 179.97438 * 19 16 15 22 22 N 1.31518 * 120.00074 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 120.00086 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47001 * 60.00417 * 23 21 19 25 25 H 1.48498 * 109.46980 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47267 * 300.00049 * 23 21 19 27 27 C 1.40261 * 107.83610 * 0.02562 * 4 3 2 28 28 N 1.30831 * 108.33069 * 359.71656 * 27 4 3 29 29 H 1.09002 * 109.47391 * 89.99356 * 1 2 3 30 30 H 1.09001 * 109.46813 * 329.99412 * 1 2 3 31 31 H 1.09004 * 109.47041 * 209.99539 * 1 2 3 32 32 H 1.08005 * 126.22077 * 0.03302 * 3 2 1 33 33 H 1.08995 * 110.41610 * 134.69473 * 8 6 5 34 34 H 1.09005 * 110.40762 * 257.01905 * 8 6 5 35 35 H 1.09001 * 110.86725 * 94.43419 * 13 11 5 36 36 H 1.08998 * 110.98362 * 330.76078 * 13 11 5 37 37 H 1.09006 * 110.36546 * 278.37349 * 14 13 11 38 38 H 1.09002 * 110.36581 * 156.06463 * 14 13 11 39 39 H 0.97001 * 120.00386 * 180.02562 * 22 21 19 40 40 H 1.07998 * 125.83485 * 179.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2643 1.0979 0.0000 4 6 3.5518 0.6675 -0.0006 5 7 4.6988 1.4835 -0.0003 6 6 4.6694 2.8260 0.0012 7 8 3.6596 3.4982 -0.0108 8 6 6.0761 3.3785 0.0194 9 6 6.9694 2.1822 -0.3814 10 1 7.2397 2.1927 -1.4372 11 6 6.0708 0.9733 0.0049 12 1 6.2008 0.1245 -0.6665 13 6 6.5301 0.6700 1.4649 14 6 8.0444 0.9875 1.3946 15 7 8.1441 2.1561 0.5025 16 16 9.3779 3.2606 0.4968 17 8 10.5070 2.6038 1.0565 18 8 9.3834 3.8496 -0.7964 19 6 8.9373 4.5406 1.6247 20 1 8.0000 4.4906 2.1589 21 6 9.7891 5.6061 1.8252 22 7 10.9302 5.6673 1.1743 23 14 9.3216 6.9634 3.0204 24 1 9.1416 6.3878 4.3774 25 1 10.3985 7.9854 3.0546 26 1 8.0530 7.5965 2.5789 27 6 3.5359 -0.7350 -0.0015 28 7 2.2894 -1.1324 0.0046 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 0.8900 0.5139 31 1 -0.3633 -0.8901 0.5138 32 1 1.9355 2.1267 0.0005 33 1 6.1764 4.1871 -0.7045 34 1 6.3336 3.7297 1.0187 35 1 6.3622 -0.3775 1.7150 36 1 6.0267 1.3246 2.1763 37 1 8.5901 0.1423 0.9750 38 1 8.4270 1.2328 2.3853 39 1 11.5297 6.4167 1.3157 40 1 4.4042 -1.3772 -0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192950556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:50 Heat of formation + Delta-G solvation = -19.991511 kcal Electronic energy + Delta-G solvation = -28215.771698 eV Core-core repulsion = 24159.488881 eV Total energy + Delta-G solvation = -4056.282817 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.68377 -40.44997 -37.74825 -35.36176 -35.11230 -34.05994 -33.23012 -33.10184 -31.54525 -30.36867 -28.43186 -26.77797 -26.37263 -26.07681 -22.22004 -21.90466 -21.77435 -20.26470 -19.38734 -18.66107 -17.86198 -17.72713 -16.38858 -16.18403 -15.78051 -15.38939 -15.18434 -14.92280 -14.79757 -14.55399 -14.35398 -13.87736 -13.66254 -13.37000 -13.31393 -13.18895 -12.93031 -12.72813 -12.43263 -12.21646 -12.01637 -11.78828 -11.33687 -11.23147 -11.08118 -10.95825 -10.81729 -10.64932 -10.47619 -10.39024 -10.29399 -10.23595 -9.83999 -9.59598 -9.28508 -9.03468 -8.38423 -7.72275 -6.75646 -5.39063 1.64405 2.04254 2.19374 2.24742 2.96229 3.04076 3.06512 3.11253 3.16556 3.97405 4.10106 4.24858 4.44460 4.58438 4.62807 4.75857 4.79933 4.87928 4.91415 5.00132 5.11928 5.12676 5.27781 5.41246 5.43858 5.53415 5.59635 5.75182 5.84802 5.91156 6.01127 6.06062 6.14210 6.24084 6.27279 6.63890 6.70159 6.87641 7.03954 7.27380 7.29666 7.47759 7.89490 8.16646 8.83128 10.18156 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019830 B = 0.003477 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.682228 B = 8051.021254 C = 8808.536448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.377 5.377 3 C 0.035 3.965 4 C 0.015 3.985 5 N -0.528 5.528 6 C 0.526 3.474 7 O -0.528 6.528 8 C -0.177 4.177 9 C 0.153 3.847 10 H 0.111 0.889 11 C 0.126 3.874 12 H 0.114 0.886 13 C -0.139 4.139 14 C 0.126 3.874 15 N -1.014 6.014 16 S 2.724 3.276 17 O -0.997 6.997 18 O -0.996 6.996 19 C -1.019 5.019 20 H 0.102 0.898 21 C 0.135 3.865 22 N -0.845 5.845 23 Si 0.919 3.081 24 H -0.264 1.264 25 H -0.276 1.276 26 H -0.263 1.263 27 C 0.039 3.961 28 N -0.284 5.284 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.189 0.811 33 H 0.116 0.884 34 H 0.126 0.874 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.292 0.708 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.687 -11.108 -0.705 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.163 5.163 3 C -0.112 4.112 4 C -0.088 4.088 5 N -0.254 5.254 6 C 0.315 3.685 7 O -0.404 6.404 8 C -0.218 4.218 9 C 0.045 3.955 10 H 0.129 0.871 11 C 0.021 3.979 12 H 0.132 0.868 13 C -0.179 4.179 14 C 0.000 4.000 15 N -0.848 5.848 16 S 2.826 3.174 17 O -0.988 6.988 18 O -0.987 6.987 19 C -1.152 5.152 20 H 0.121 0.879 21 C -0.084 4.084 22 N -0.474 5.474 23 Si 0.742 3.258 24 H -0.188 1.188 25 H -0.201 1.201 26 H -0.187 1.187 27 C -0.149 4.149 28 N -0.106 5.106 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.206 0.794 33 H 0.134 0.866 34 H 0.144 0.856 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -16.134 -11.696 -1.301 19.970 hybrid contribution -0.009 1.752 1.096 2.067 sum -16.143 -9.943 -0.205 18.961 Atomic orbital electron populations 1.21825 0.73658 1.04469 1.03361 1.48303 1.06494 1.03286 1.58177 1.22488 0.89582 0.93901 1.05193 1.17579 0.86128 0.90220 1.14855 1.45153 1.04215 1.05696 1.70354 1.21024 0.91808 0.81103 0.74553 1.90633 1.37170 1.62401 1.50181 1.23063 0.91146 1.00313 1.07278 1.21973 0.85191 0.92548 0.95818 0.87131 1.22961 0.78982 0.97587 0.98398 0.86845 1.23378 0.96418 1.02607 0.95524 1.21806 0.94724 0.88502 0.94987 1.59352 1.37961 1.41153 1.46310 1.00357 0.70196 0.72284 0.74592 1.93374 1.48061 1.76829 1.80497 1.93369 1.85700 1.76952 1.42649 1.30558 1.15317 1.24557 1.44807 0.87940 1.24727 0.92456 0.97448 0.93720 1.69875 1.08641 1.31851 1.37073 0.86220 0.79241 0.79599 0.80696 1.18846 1.20098 1.18702 1.23636 0.95706 0.92646 1.02888 1.77258 1.00860 1.08808 1.23630 0.90767 0.89400 0.89303 0.79416 0.86556 0.85648 0.89684 0.89994 0.91500 0.89921 0.89718 0.79663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.68 11.48 59.85 0.69 1.37 16 2 N -0.38 -4.12 4.04 -67.82 -0.27 -4.39 16 3 C 0.03 0.43 10.68 -16.68 -0.18 0.25 16 4 C 0.01 0.18 6.79 -83.88 -0.57 -0.38 16 5 N -0.53 -6.94 2.79 -103.52 -0.29 -7.23 16 6 C 0.53 8.19 7.97 -10.99 -0.09 8.10 16 7 O -0.53 -9.36 15.60 5.53 0.09 -9.27 16 8 C -0.18 -2.83 6.29 -26.83 -0.17 -3.00 16 9 C 0.15 2.31 4.02 -65.48 -0.26 2.05 16 10 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 11 C 0.13 1.47 3.68 -65.04 -0.24 1.23 16 12 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 13 C -0.14 -1.56 6.65 -24.12 -0.16 -1.72 16 14 C 0.13 1.78 6.97 -2.58 -0.02 1.77 16 15 N -1.01 -18.24 3.19 -102.94 -0.33 -18.57 16 16 S 2.72 67.75 5.08 -107.50 -0.55 67.21 16 17 O -1.00 -27.66 17.60 -57.17 -1.01 -28.66 16 18 O -1.00 -27.28 17.60 -57.17 -1.01 -28.29 16 19 C -1.02 -26.38 9.51 30.60 0.29 -26.09 16 20 H 0.10 2.40 6.98 -52.49 -0.37 2.03 16 21 C 0.13 3.62 5.46 -17.82 -0.10 3.52 16 22 N -0.84 -24.04 13.19 55.43 0.73 -23.31 16 23 Si 0.92 20.01 29.54 -169.99 -5.02 14.99 16 24 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 26 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 27 C 0.04 0.43 11.52 -17.22 -0.20 0.23 16 28 N -0.28 -3.43 12.56 30.71 0.39 -3.04 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.19 2.36 6.49 -52.48 -0.34 2.02 16 33 H 0.12 1.88 8.14 -51.93 -0.42 1.46 16 34 H 0.13 2.12 6.87 -51.93 -0.36 1.76 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.29 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -36.50 351.65 -7.82 -44.32 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.85 Total: 3.62 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -1.00 Total: -12.67 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.22 Total: -56.55 kcal Atomic # 8 Polarization: -64.30 SS G_CDS: -1.93 Total: -66.22 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 67.75 SS G_CDS: -0.55 Total: 67.21 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.50 -7.82 -44.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192950556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.330 kcal (2) G-P(sol) polarization free energy of solvation -36.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds